IslandPath Analysis: Chlamydophila pneumoniae AR39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.53   STD DEV: 3.43
Chlamydophila pneumoniae AR39, complete genome - 1..1229853
1112 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
335	 42.55	0	379765..380979	+	404	16752624	-	CP0339	-	hypothetical protein
336	 42.46	0	381054..382028	+	324	16752625	-	CP0340	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
337	 40.00	0	381994..383973	+	659	16752626	-	CP0341	-	ABC transporter, ATP-binding protein
338	 41.36	0	383948..384607	-	219	16752627	-	CP0342	-	hypothetical protein
339	 42.44	0	384585..385364	-	259	16752628	-	CP0343	-	hypothetical protein
340	 41.60	0	385361..386074	-	237	16752629	-	CP0344	-	DNA polymerase III subunit epsilon
341	 37.45	0	386067..386552	-	161	16752630	-	CP0345	-	hypothetical protein
342	 35.83	-1	386613..387092	-	159	16752631	-	CP0346	-	hypothetical protein
343	 42.19	0	387279..387470	+	63	16752632	-	CP0347	-	hypothetical protein
344	 41.55	0	387455..388342	+	295	16752633	-	CP0348	-	hypothetical protein
345	 43.78	0	388329..389228	-	299	16752634	-	CP0349	-	enoyl-(acyl carrier protein) reductase
346	 48.01	+2	389458..390234	+	258	16752635	-	CP0350	-	hypothetical protein
347	 45.39	+1	390310..391329	+	339	16752636	-	CP0351	-	hypothetical protein
348	 40.81	0	392203..393312	+	369	16753072	-	CP0353	-	A/G-specific adenine glycosylase
349	 46.06	+1	393313..393705	+	130	16752637	-	CP0354	-	mazG protein, putative
350	 41.21	0	393888..394661	-	257	16752638	-	CP0355	-	hypothetical protein
351	 42.59	0	394671..395318	-	215	16752639	-	CP0356	-	hypothetical protein
352	 38.01	0	395494..395664	-	56	16752640	-	CP0357	-	hypothetical protein
353	 43.90	0	396082..396819	+	245	16752641	-	CP0358	-	serine/threonine protein phosphatase, putative
354	 44.62	+1	396844..397959	+	371	16752642	-	CP0359	-	nifS protein, putative
355	 37.20	0	398019..399233	-	404	16752643	-	CP0360	-	hypothetical protein
356	 39.81	0	399226..400461	-	411	16752644	-	CP0361	-	hypothetical protein
357	 41.09	0	400471..400818	-	115	16752645	-	CP0362	-	hypothetical protein
358	 40.66	0	400811..401383	-	190	16752646	dcd	CP0363	-	deoxycytidine triphosphate deaminase
359	 37.10	-1	401505..401690	+	61	16752647	-	CP0364	-	hypothetical protein
360	 42.50	0	402053..403066	+	337	16752648	ruvB	CP0365	-	Holliday junction DNA helicase B
361	 40.66	0	403063..403881	+	272	16752649	-	CP0366	-	hypothetical protein
362	 43.16	0	403874..405868	-	664	16752650	-	CP0367	-	glycosyl hydrolase family protein
363	 40.12	0	406001..406501	+	166	16752651	-	CP0368	-	hypothetical protein
364	 41.61	0	406672..407154	+	160	16752652	-	CP0369	-	single-strand DNA-binding protein
365	 41.93	0	407179..408678	+	499	16752653	-	CP0370	-	leucyl aminopeptidase
366	 42.97	0	408820..409338	+	172	16752654	-	CP0371	-	Hc2 nucleoprotein
367	 42.41	0	409504..410451	+	315	16752655	-	CP0372	-	hypothetical protein
368	 45.19	+1	410448..411164	+	238	16752656	-	CP0373	-	tetrapyrrole methylase family protein
369	 41.56	0	411330..411560	-	76	16752657	-	CP0374	-	hypothetical protein
370	 44.23	+1	411595..413163	+	522	16752658	-	CP0375	-	hypothetical protein
371	 44.98	+1	413318..414502	-	394	16752659	-	CP0376	-	coproporphyrinogen III oxidase
372	 43.62	0	414429..414875	-	148	16752660	-	CP0377	-	hypothetical protein
373	 42.17	0	415029..417755	+	908	16752661	kgd	CP0378	-	alpha-ketoglutarate decarboxylase
374	 44.47	+1	417759..418853	+	364	16752662	-	CP0379	-	dihydrolipoamide acetyltransferase
375	 38.51	0	418900..419343	-	147	16752663	-	CP0380	-	hypothetical protein
376	 42.37	0	419579..420076	-	165	16752664	-	CP0381	-	hypothetical protein
377	 46.59	+1	420233..420979	-	248	16752665	-	CP0382	-	hypothetical protein
378	 43.59	0	420976..422817	-	613	16752666	-	CP0383	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
379	 40.74	0	423046..423153	-	35	16752667	-	CP0384	-	hypothetical protein
380	 41.19	0	423193..423510	-	105	16752668	-	CP0385	-	hypothetical protein
381	 40.83	0	423691..424050	-	119	16752669	-	CP0386	-	hypothetical protein
382	 44.80	+1	424282..425397	-	371	16752670	-	CP0387	-	hypothetical protein
383	 46.17	+1	425632..426846	-	404	16752671	-	CP0388	-	hypothetical protein
384	 46.46	+1	426961..427059	-	32	16752672	-	CP0389	-	hypothetical protein
385	 42.06	0	427087..427407	-	106	16753077	-	CP0389.1	-	hypothetical protein
386	 44.99	+1	427358..428095	-	245	16753078	-	CP0390	-	hypothetical protein
387	 44.23	+1	428754..429221	-	155	16752673	-	CP0391	-	hypothetical protein
388	 41.26	0	429650..430684	-	344	16752674	-	CP0392	-	hypothetical protein
389	 44.20	+1	430956..431231	-	91	16752675	-	CP0393	-	ferredoxin
390	 41.05	0	431509..433257	+	582	16752676	-	CP0394	-	type III secretion system protein
391	 44.19	+1	433372..434145	+	257	16752677	-	CP0395	-	RNA polymerase sigma factor sigma-28
392	 45.99	+1	434094..434417	-	107	16752678	-	CP0396	-	hypothetical protein
393	 41.65	0	434580..435818	+	412	16752679	-	CP0397	-	tyrosyl-tRNA synthetase
394	 44.03	+1	435839..437278	+	479	16752680	-	CP0398	-	6-phosphogluconate dehydrogenase
395	 40.85	0	437377..439185	-	602	16752681	-	CP0399	-	GTP-binding protein LepA
396	 33.90	-1	439446..439622	+	58	16752682	-	CP0400	-	hypothetical protein
397	 38.26	0	439880..440731	+	283	16752683	-	CP0401	-	hypothetical protein
398	 38.14	0	440738..441091	+	117	16752684	-	CP0402	-	hypothetical protein
399	 33.33	-2	441125..441241	+	38	16752685	-	CP0403	-	hypothetical protein
400	 38.99	0	441302..442609	+	435	16752686	-	CP0404	-	hypothetical protein
401	 37.64	0	442687..444078	-	463	16752687	-	CP0405	-	hypothetical protein
402	 23.17	-2	444059..444304	-	81	16752688	-	CP0406	-	hypothetical protein
403	 37.78	0	444364..445644	-	426	16752689	-	CP0407	-	hypothetical protein
404	 40.50	0	445762..447309	-	515	16752690	-	CP0408	-	ADP, ATP carrier protein
405	 40.12	0	447510..448025	-	171	16752691	-	CP0409	-	hypothetical protein
406	 22.06	-2	448193..448396	-	67	16752692	-	CP0410	-	hypothetical protein
407	 40.04	0	448512..449495	+	327	16752693	-	CP0411	-	ABC transporter, periplasmic substrate-binding protein, putative
408	 40.90	0	449479..450258	+	259	16752694	-	CP0412	-	ABC transporter, ATP-binding protein
409	 39.16	0	450252..451607	+	451	16752695	-	CP0413	-	ABC transporter, permease protein, putative
410	 36.41	-1	451607..452581	+	324	16752696	-	CP0414	-	ABC transporter, permease protein, putative
411	 40.26	0	452710..453849	+	379	16752697	-	CP0415	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
412	 40.30	0	453862..455727	+	621	16752698	-	CP0416	-	zinc protease
413	 40.08	0	455684..456661	-	325	16752699	-	CP0417	-	hypothetical protein
414	 40.24	0	457905..459005	-	366	16752700	-	CP0419	-	DNA polymerase III subunit beta
415	 38.67	0	459035..459184	+	49	16752701	-	CP0420	-	hypothetical protein
416	 42.77	0	459214..459711	+	165	16752702	smpB	CP0421	-	SsrA-binding protein
417	 40.63	0	459689..460633	-	314	16752703	-	CP0422	-	thiamine biosynthesis lipoprotein
418	 46.46	+1	460606..461466	-	286	16752704	-	CP0423	-	methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
419	 39.57	0	461457..461921	-	154	16752705	-	CP0424	-	hypothetical protein
420	 39.12	0	462193..462486	+	97	16752706	-	CP0425	-	hypothetical protein
421	 45.80	+1	462846..464585	+	579	16752707	-	CP0426	-	hypothetical protein
422	 39.83	0	464608..465084	+	158	16752708	-	CP0427	-	hypothetical protein
423	 35.40	-1	465134..466195	-	353	16752709	-	CP0428	-	phospholipase D family protein
424	 44.05	+1	466288..468042	-	584	16752710	-	CP0429	-	hypothetical protein
425	 37.04	-1	468069..468338	-	89	16752711	rpmB	CP0430	-	50S ribosomal protein L28
426	 40.42	0	468555..470135	-	526	16752712	-	CP0431	-	4-alpha-glucanotransferase
427	 41.44	0	470132..470575	-	147	16752713	-	CP0432	-	type III secretion chaperone
428	 43.58	0	470592..471791	-	399	16752714	-	CP0433	-	type III secreted protein SctW
429	 42.80	0	471820..473952	-	710	16752715	-	CP0434	-	type III secretion inner membrane protein SctV
430	 37.21	0	473952..475034	-	360	16752716	-	CP0435	-	type III secretion system protein
431	 40.00	0	475425..476519	+	364	16752717	-	CP0436	-	translation-associated GTPase
432	 39.05	0	476497..477423	-	308	16752718	-	CP0437	-	bifunctional riboflavin kinase/FMN adenylyltransferase
433	 41.10	0	477401..478108	-	235	16752719	truB	CP0438	-	tRNA pseudouridine synthase B
434	 34.51	-1	478154..478579	-	141	16752720	rbfA	CP0439	-	ribosome-binding factor A
40.53	MEAN

3.43	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.