IslandPath Analysis: Chlamydophila pneumoniae AR39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.53   STD DEV: 3.43
Chlamydophila pneumoniae AR39, complete genome - 1..1229853
1112 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
298	 43.30	0	330527..333376	-	949	16752589	-	CP0302	-	polymorphic membrane protein G family protein
299	 42.66	0	333476..336262	+	928	16752590	-	CP0303	-	polymorphic membrane protein G family protein
300	 35.77	-1	336620..336742	-	40	16752591	-	CP0304	-	hypothetical protein
301	 40.77	0	336779..337894	+	371	16752592	-	CP0305	-	hypothetical protein
302	 43.92	0	338235..341021	-	928	16752593	-	CP0306	-	polymorphic membrane protein G family protein
303	 44.72	+1	341171..343963	-	930	16752594	-	CP0307	-	polymorphic membrane protein G family protein
304	 44.57	+1	344007..346817	-	936	16752595	-	CP0308	-	polymorphic membrane protein G family protein
305	 44.51	+1	347079..350909	-	1276	16752596	-	CP0309	-	polymorphic membrane protein G family protein
306	 46.89	+1	351214..352467	-	417	16752597	-	CP0310	-	hypothetical protein
307	 45.47	+1	352665..353183	-	172	16752598	-	CP0311	-	hypothetical protein
308	 41.01	0	353355..354305	-	316	16753070	-	CP0312	-	hypothetical protein
309	 41.94	0	354453..355091	-	212	16752599	-	CP0313	-	hypothetical protein
310	 41.29	0	355116..355643	-	175	16752600	-	CP0314	-	hypothetical protein
311	 43.65	0	355780..356865	+	361	16752601	trmU	CP0315	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
312	 43.70	0	356843..359380	-	845	16752602	-	CP0316	-	ATP-dependent Clp protease, ATP-binding subunit
313	 42.92	0	359578..360297	+	239	16752603	-	CP0317	-	hypothetical protein
314	 41.51	0	360294..361724	+	476	16752604	-	CP0318	-	phospholipase D family protein
315	 42.10	0	361734..363923	+	729	16752605	-	CP0319	-	hypothetical protein
316	 41.95	0	363923..364270	+	115	16752606	-	CP0320	-	glycine cleavage system protein H
317	 44.44	+1	364380..364685	+	101	16752607	-	CP0321	-	hypothetical protein
318	 41.07	0	364713..365048	+	111	16752608	-	CP0322	-	hypothetical protein
319	 43.71	0	365100..365870	-	256	16752609	-	CP0323	-	Na(+)-translocating NADH-quinone reductase subunit E
320	 40.03	0	365874..366515	-	213	16752610	-	CP0324	-	Na(+)-translocating NADH-quinone reductase subunit D
321	 41.74	0	366512..367474	-	320	16752611	-	CP0325	-	Na(+)-translocating NADH-quinone reductase subunit C
322	 44.18	+1	367478..368989	-	503	16752612	-	CP0326	-	Na(+)-translocating NADH-quinone reductase subunit B
323	 42.49	0	369085..369663	+	192	16753071	-	CP0327	-	hypothetical protein
324	 42.52	0	369629..370216	-	195	16752613	-	CP0328	-	hypothetical protein
325	 37.89	0	370232..371635	-	467	16752614	dnaA	CP0329	-	chromosomal replication initiation protein
326	 39.16	0	371977..372405	-	142	16752615	-	CP0330	-	hypothetical protein
327	 39.19	0	372409..372954	-	181	16752616	-	CP0331	-	hypothetical protein
328	 35.83	-1	373061..373180	-	39	16752617	-	CP0332	-	hypothetical protein
329	 42.73	0	373198..374091	+	297	16752618	mraW	CP0333	-	S-adenosyl-methyltransferase MraW
330	 35.07	-1	374088..374375	+	95	16752619	-	CP0334	-	hypothetical protein
331	 44.24	+1	374362..376323	+	653	16752620	-	CP0335	-	penicillin-binding protein
332	 42.70	0	376796..378247	+	483	16752621	murE	CP0336	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
333	 42.89	0	378162..378956	+	264	16752622	-	CP0337	-	N-acetylmuramoyl-L-alanine amidase, putative
334	 40.26	0	379341..379643	+	100	16752623	-	CP0338	-	integration host factor beta-subunit, putative
335	 42.55	0	379765..380979	+	404	16752624	-	CP0339	-	hypothetical protein
336	 42.46	0	381054..382028	+	324	16752625	-	CP0340	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
337	 40.00	0	381994..383973	+	659	16752626	-	CP0341	-	ABC transporter, ATP-binding protein
338	 41.36	0	383948..384607	-	219	16752627	-	CP0342	-	hypothetical protein
339	 42.44	0	384585..385364	-	259	16752628	-	CP0343	-	hypothetical protein
340	 41.60	0	385361..386074	-	237	16752629	-	CP0344	-	DNA polymerase III subunit epsilon
341	 37.45	0	386067..386552	-	161	16752630	-	CP0345	-	hypothetical protein
342	 35.83	-1	386613..387092	-	159	16752631	-	CP0346	-	hypothetical protein
343	 42.19	0	387279..387470	+	63	16752632	-	CP0347	-	hypothetical protein
344	 41.55	0	387455..388342	+	295	16752633	-	CP0348	-	hypothetical protein
345	 43.78	0	388329..389228	-	299	16752634	-	CP0349	-	enoyl-(acyl carrier protein) reductase
346	 48.01	+2	389458..390234	+	258	16752635	-	CP0350	-	hypothetical protein
347	 45.39	+1	390310..391329	+	339	16752636	-	CP0351	-	hypothetical protein
348	 40.81	0	392203..393312	+	369	16753072	-	CP0353	-	A/G-specific adenine glycosylase
349	 46.06	+1	393313..393705	+	130	16752637	-	CP0354	-	mazG protein, putative
350	 41.21	0	393888..394661	-	257	16752638	-	CP0355	-	hypothetical protein
351	 42.59	0	394671..395318	-	215	16752639	-	CP0356	-	hypothetical protein
352	 38.01	0	395494..395664	-	56	16752640	-	CP0357	-	hypothetical protein
353	 43.90	0	396082..396819	+	245	16752641	-	CP0358	-	serine/threonine protein phosphatase, putative
354	 44.62	+1	396844..397959	+	371	16752642	-	CP0359	-	nifS protein, putative
355	 37.20	0	398019..399233	-	404	16752643	-	CP0360	-	hypothetical protein
356	 39.81	0	399226..400461	-	411	16752644	-	CP0361	-	hypothetical protein
357	 41.09	0	400471..400818	-	115	16752645	-	CP0362	-	hypothetical protein
358	 40.66	0	400811..401383	-	190	16752646	dcd	CP0363	-	deoxycytidine triphosphate deaminase
359	 37.10	-1	401505..401690	+	61	16752647	-	CP0364	-	hypothetical protein
360	 42.50	0	402053..403066	+	337	16752648	ruvB	CP0365	-	Holliday junction DNA helicase B
361	 40.66	0	403063..403881	+	272	16752649	-	CP0366	-	hypothetical protein
362	 43.16	0	403874..405868	-	664	16752650	-	CP0367	-	glycosyl hydrolase family protein
363	 40.12	0	406001..406501	+	166	16752651	-	CP0368	-	hypothetical protein
364	 41.61	0	406672..407154	+	160	16752652	-	CP0369	-	single-strand DNA-binding protein
365	 41.93	0	407179..408678	+	499	16752653	-	CP0370	-	leucyl aminopeptidase
366	 42.97	0	408820..409338	+	172	16752654	-	CP0371	-	Hc2 nucleoprotein
367	 42.41	0	409504..410451	+	315	16752655	-	CP0372	-	hypothetical protein
368	 45.19	+1	410448..411164	+	238	16752656	-	CP0373	-	tetrapyrrole methylase family protein
369	 41.56	0	411330..411560	-	76	16752657	-	CP0374	-	hypothetical protein
370	 44.23	+1	411595..413163	+	522	16752658	-	CP0375	-	hypothetical protein
371	 44.98	+1	413318..414502	-	394	16752659	-	CP0376	-	coproporphyrinogen III oxidase
372	 43.62	0	414429..414875	-	148	16752660	-	CP0377	-	hypothetical protein
373	 42.17	0	415029..417755	+	908	16752661	kgd	CP0378	-	alpha-ketoglutarate decarboxylase
374	 44.47	+1	417759..418853	+	364	16752662	-	CP0379	-	dihydrolipoamide acetyltransferase
375	 38.51	0	418900..419343	-	147	16752663	-	CP0380	-	hypothetical protein
376	 42.37	0	419579..420076	-	165	16752664	-	CP0381	-	hypothetical protein
377	 46.59	+1	420233..420979	-	248	16752665	-	CP0382	-	hypothetical protein
378	 43.59	0	420976..422817	-	613	16752666	-	CP0383	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
379	 40.74	0	423046..423153	-	35	16752667	-	CP0384	-	hypothetical protein
380	 41.19	0	423193..423510	-	105	16752668	-	CP0385	-	hypothetical protein
381	 40.83	0	423691..424050	-	119	16752669	-	CP0386	-	hypothetical protein
382	 44.80	+1	424282..425397	-	371	16752670	-	CP0387	-	hypothetical protein
383	 46.17	+1	425632..426846	-	404	16752671	-	CP0388	-	hypothetical protein
384	 46.46	+1	426961..427059	-	32	16752672	-	CP0389	-	hypothetical protein
385	 42.06	0	427087..427407	-	106	16753077	-	CP0389.1	-	hypothetical protein
386	 44.99	+1	427358..428095	-	245	16753078	-	CP0390	-	hypothetical protein
387	 44.23	+1	428754..429221	-	155	16752673	-	CP0391	-	hypothetical protein
388	 41.26	0	429650..430684	-	344	16752674	-	CP0392	-	hypothetical protein
389	 44.20	+1	430956..431231	-	91	16752675	-	CP0393	-	ferredoxin
390	 41.05	0	431509..433257	+	582	16752676	-	CP0394	-	type III secretion system protein
391	 44.19	+1	433372..434145	+	257	16752677	-	CP0395	-	RNA polymerase sigma factor sigma-28
392	 45.99	+1	434094..434417	-	107	16752678	-	CP0396	-	hypothetical protein
393	 41.65	0	434580..435818	+	412	16752679	-	CP0397	-	tyrosyl-tRNA synthetase
394	 44.03	+1	435839..437278	+	479	16752680	-	CP0398	-	6-phosphogluconate dehydrogenase
395	 40.85	0	437377..439185	-	602	16752681	-	CP0399	-	GTP-binding protein LepA
396	 33.90	-1	439446..439622	+	58	16752682	-	CP0400	-	hypothetical protein
397	 38.26	0	439880..440731	+	283	16752683	-	CP0401	-	hypothetical protein
40.53	MEAN

3.43	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.