IslandPath Analysis: Chlamydophila pneumoniae AR39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.53   STD DEV: 3.43
Chlamydophila pneumoniae AR39, complete genome - 1..1229853
1112 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
227	 41.76	0	235403..236482	-	359	16752518	-	CP0229	-	hypothetical protein
228	 45.65	+1	236530..236862	-	110	16752519	-	CP0230	-	hypothetical protein
229	 42.26	0	236927..237598	-	223	16752520	hemD	CP0231	-	uroporphyrinogen-III synthase
230	 42.17	0	237854..239347	+	497	16752521	glyA	CP0232	-	serine hydroxymethyltransferase
231	 40.45	0	239367..239942	+	191	16752522	-	CP0233	-	ATP-dependent Clp protease proteolytic subunit
232	 43.67	0	239911..240684	+	257	16752523	dapF	CP0234	-	diaminopimelate epimerase
233	 38.36	0	240782..241756	+	324	16752524	-	CP0235	-	hypothetical protein
234	 45.00	+1	241954..242793	+	279	16752525	-	CP0236	-	hypothetical protein
235	 45.11	+1	242771..244333	+	520	16752526	-	CP0237	-	hypothetical protein
236	 44.68	+1	244401..245114	-	237	16752527	ubiE	CP0238	-	ubiquinone/menaquinone biosynthesis methyltransferase
237	 45.53	+1	245062..245856	-	264	16752528	-	CP0239	-	hypothetical protein
238	 43.06	0	245829..246938	-	369	16752529	-	CP0240	-	hypothetical protein
239	 44.02	+1	246910..247143	-	77	16752530	-	CP0241	-	hypothetical protein
240	 44.71	+1	247170..249032	-	620	16752531	-	CP0242	-	hypothetical protein
241	 39.60	0	249094..249444	-	116	16752532	-	CP0243	-	anti-anti-sigma factor
242	 43.99	+1	249609..250772	-	387	16752533	-	CP0244	-	hemolysin, putative
243	 38.78	0	250774..251250	-	158	16752534	-	CP0245	-	hypothetical protein
244	 38.89	0	251282..251443	-	53	16752535	-	CP0246	-	hypothetical protein
245	 40.61	0	251742..252524	-	260	16752536	-	CP0247	-	hypothetical protein
246	 46.02	+1	252476..253066	-	196	16752537	-	CP0248	-	DNA-3-methyladenine glycosylase
247	 42.98	0	253068..255098	-	676	16752538	-	CP0249	-	VacB/Rnb family exoribonuclease
248	 30.48	-2	255287..255391	+	34	16752539	-	CP0250	-	hypothetical protein
249	 42.21	0	255369..257351	-	660	16752540	dnaK	CP0251	-	molecular chaperone DnaK
250	 38.20	0	257381..257935	-	184	16752541	-	CP0252	-	heat shock protein GrpE, putative
251	 40.03	0	257932..259155	-	407	16752542	hrcA	CP0253	-	heat-inducible transcription repressor
252	 45.40	+1	259220..260926	-	568	16752543	-	CP0254	-	prolyl-tRNA synthetase
253	 46.20	+1	261226..262383	+	385	16752544	-	CP0255	-	hypothetical protein
254	 43.29	0	262551..263504	+	317	16752545	-	CP0256	-	hypothetical protein
255	 37.73	0	263497..263769	+	90	16752546	-	CP0257	-	hypothetical protein
256	 40.86	0	263771..264793	-	340	16752547	-	CP0258	-	hypothetical protein
257	 43.13	0	264790..265983	-	397	16752548	-	CP0259	-	L,L-diaminopimelate aminotransferase
258	 45.50	+1	266222..266443	+	73	16752549	-	CP0260	-	hypothetical protein
259	 44.44	+1	266582..266734	+	50	16752550	-	CP0261	-	hypothetical protein
260	 42.95	0	266779..266934	-	51	16752551	-	CP0262	-	hypothetical protein
261	 42.90	0	267021..268253	+	410	16752552	-	CP0263	-	hypothetical protein
262	 43.88	0	268250..270307	-	685	16752553	-	CP0264	-	hypothetical protein
263	 39.87	0	270591..271493	+	300	16752554	-	CP0265	-	hypothetical protein
264	 40.48	0	271445..271822	+	125	16752555	-	CP0266	-	HIT family protein
265	 44.73	+1	271846..273477	+	543	16752556	-	CP0267	-	hypothetical protein
266	 45.24	+1	273850..275184	+	444	16752557	-	CP0268	-	sodium:solute symporter family protein
267	 41.03	0	275354..275548	-	64	16752558	-	CP0269	-	hypothetical protein
268	 48.83	+2	275759..276616	-	285	16752559	-	CP0270	-	3-deoxy-7-phosphoheptulonate synthase
269	 43.17	0	276619..279720	-	1033	16752560	-	CP0271	-	hypothetical protein
270	 41.15	0	279849..280628	+	259	16752561	-	CP0272	-	amino acid ABC transporter, periplasmic amino acid-binding protein
271	 44.60	+1	282284..282940	+	218	16752562	-	CP0274	-	hypothetical protein
272	 42.19	0	283162..283974	+	270	16752563	-	CP0275	-	metal-dependent hydrolase, putative
273	 43.90	0	283962..285380	+	472	16752564	-	CP0276	-	GTP-binding protein HflX, putative
274	 43.05	0	285481..286746	+	421	16752565	-	CP0277	-	hypothetical protein
275	 45.76	+1	286743..287732	+	329	16752566	-	CP0278	-	hypothetical protein
276	 45.77	+1	287743..289905	+	720	16752567	-	CP0279	-	glycogen branching enzyme
277	 45.08	+1	290014..291783	+	589	16752568	-	CP0280	-	hypothetical protein
278	 46.43	+1	291994..293520	+	508	16752569	-	CP0281	-	hypothetical protein
279	 46.61	+1	293682..296009	+	775	16752570	-	CP0282	-	hypothetical protein
280	 41.46	0	296183..299023	-	946	16752571	-	CP0283	-	polymorphic membrane protein E/F family protein
281	 43.58	0	302150..305008	-	952	16752572	-	CP0285	-	polymorphic membrane protein E/F family protein
282	 44.02	+1	305047..307863	-	938	16752573	-	CP0286	-	polymorphic membrane protein E/F family protein
283	 44.06	+1	308375..308719	+	114	16752574	-	CP0287	-	hypothetical protein
284	 43.12	0	308745..309224	+	159	16752575	-	CP0288	-	hypothetical protein
285	 42.56	0	309230..310399	+	389	16752576	-	CP0289	-	hypothetical protein
286	 43.44	0	310535..312553	+	672	16752577	-	CP0290	-	hypothetical protein
287	 44.36	+1	312949..313746	+	265	16752578	-	CP0291	-	hypothetical protein
288	 43.08	0	313747..314598	+	283	16752579	-	CP0292	-	hypothetical protein
289	 40.26	0	314582..314971	+	129	16752580	-	CP0293	-	hypothetical protein
290	 43.63	0	315267..317354	+	695	16752581	-	CP0294	-	hypothetical protein
291	 42.96	0	317722..319611	+	629	16752582	-	CP0295	-	hypothetical protein
292	 41.46	0	319632..319754	+	40	16752583	-	CP0296	-	hypothetical protein
293	 43.67	0	320055..322133	+	692	16752584	-	CP0297	-	hypothetical protein
294	 45.01	+1	322470..325406	-	978	16752585	-	CP0298	-	polymorphic membrane protein H family protein
295	 44.11	+1	325433..328420	-	995	16752586	-	CP0299	-	polymorphic membrane protein G family protein
296	 38.54	0	328540..328635	-	31	16752587	-	CP0300	-	hypothetical protein
297	 43.88	0	328725..330269	-	514	16752588	-	CP0301	-	polymorphic membrane protein G family protein
298	 43.30	0	330527..333376	-	949	16752589	-	CP0302	-	polymorphic membrane protein G family protein
299	 42.66	0	333476..336262	+	928	16752590	-	CP0303	-	polymorphic membrane protein G family protein
300	 35.77	-1	336620..336742	-	40	16752591	-	CP0304	-	hypothetical protein
301	 40.77	0	336779..337894	+	371	16752592	-	CP0305	-	hypothetical protein
302	 43.92	0	338235..341021	-	928	16752593	-	CP0306	-	polymorphic membrane protein G family protein
303	 44.72	+1	341171..343963	-	930	16752594	-	CP0307	-	polymorphic membrane protein G family protein
304	 44.57	+1	344007..346817	-	936	16752595	-	CP0308	-	polymorphic membrane protein G family protein
305	 44.51	+1	347079..350909	-	1276	16752596	-	CP0309	-	polymorphic membrane protein G family protein
306	 46.89	+1	351214..352467	-	417	16752597	-	CP0310	-	hypothetical protein
307	 45.47	+1	352665..353183	-	172	16752598	-	CP0311	-	hypothetical protein
308	 41.01	0	353355..354305	-	316	16753070	-	CP0312	-	hypothetical protein
309	 41.94	0	354453..355091	-	212	16752599	-	CP0313	-	hypothetical protein
310	 41.29	0	355116..355643	-	175	16752600	-	CP0314	-	hypothetical protein
311	 43.65	0	355780..356865	+	361	16752601	trmU	CP0315	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
312	 43.70	0	356843..359380	-	845	16752602	-	CP0316	-	ATP-dependent Clp protease, ATP-binding subunit
313	 42.92	0	359578..360297	+	239	16752603	-	CP0317	-	hypothetical protein
314	 41.51	0	360294..361724	+	476	16752604	-	CP0318	-	phospholipase D family protein
315	 42.10	0	361734..363923	+	729	16752605	-	CP0319	-	hypothetical protein
316	 41.95	0	363923..364270	+	115	16752606	-	CP0320	-	glycine cleavage system protein H
317	 44.44	+1	364380..364685	+	101	16752607	-	CP0321	-	hypothetical protein
318	 41.07	0	364713..365048	+	111	16752608	-	CP0322	-	hypothetical protein
319	 43.71	0	365100..365870	-	256	16752609	-	CP0323	-	Na(+)-translocating NADH-quinone reductase subunit E
320	 40.03	0	365874..366515	-	213	16752610	-	CP0324	-	Na(+)-translocating NADH-quinone reductase subunit D
321	 41.74	0	366512..367474	-	320	16752611	-	CP0325	-	Na(+)-translocating NADH-quinone reductase subunit C
322	 44.18	+1	367478..368989	-	503	16752612	-	CP0326	-	Na(+)-translocating NADH-quinone reductase subunit B
323	 42.49	0	369085..369663	+	192	16753071	-	CP0327	-	hypothetical protein
324	 42.52	0	369629..370216	-	195	16752613	-	CP0328	-	hypothetical protein
325	 37.89	0	370232..371635	-	467	16752614	dnaA	CP0329	-	chromosomal replication initiation protein
326	 39.16	0	371977..372405	-	142	16752615	-	CP0330	-	hypothetical protein
40.53	MEAN

3.43	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.