IslandPath Analysis: Chlamydophila pneumoniae AR39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.53   STD DEV: 3.43
Chlamydophila pneumoniae AR39, complete genome - 1..1229853
1112 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
189	 36.51	-1	197655..197843	-	62	16752480	-	CP0191	-	hypothetical protein
190	 20.37	-2	198101..198208	+	35	16752481	-	CP0192	-	hypothetical protein
191	 41.39	0	198285..198557	+	90	16752482	omcA	CP0193	-	OmcA
192	 35.90	-1	198621..198737	-	38	16752483	-	CP0194	-	hypothetical protein
193	 42.61	0	198724..200394	+	556	16752484	omcB	CP0195	-	60 kDa outer membrane protein
194	 41.12	0	200673..201263	+	196	16752485	srp	CP0196	-	hypothetical protein
195	 40.68	0	201341..203287	-	648	16752486	-	CP0197	-	tail-specific protease precursor, putative
196	 40.89	0	203441..203731	-	96	16752487	-	CP0198	-	hypothetical protein
197	 40.36	0	203838..204776	+	312	16752488	-	CP0199	-	hypothetical protein
198	 44.35	+1	204998..205369	+	123	16752489	rpsL	CP0200	-	30S ribosomal protein S12
199	 42.19	0	205417..205890	+	157	16752490	-	CP0201	-	30S ribosomal protein S7
200	 41.73	0	205924..208008	+	694	16752491	-	CP0202	-	elongation factor G
201	 39.31	0	208016..208333	+	105	16752492	rpsJ	CP0203	-	30S ribosomal protein S10
202	 40.13	0	208354..209397	+	347	16752493	-	CP0204	-	oxidoreductase
203	 41.81	0	209394..209924	-	176	16752494	ispF	CP0205	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
204	 40.50	0	210356..210676	+	106	16752495	rplU	CP0206	-	50S ribosomal protein L21
205	 45.10	+1	210701..210955	+	84	16752496	rpmA	CP0207	-	50S ribosomal protein L27
206	 45.34	+1	211056..212063	+	335	161353773	obgE	CP0208	-	GTPase ObgE
207	 41.84	0	211979..212860	-	293	16752498	-	CP0209	-	ABC transporter, permease protein
208	 41.33	0	212845..213582	-	245	16752499	-	CP0210	-	ABC transporter, ATP-binding protein
209	 39.55	0	213579..214415	-	278	16752500	-	CP0211	-	ABC transporter, periplasmic substrate-binding protein, putative
210	 43.05	0	214720..219918	-	1732	16752501	-	CP0212	-	polymorphic membrane protein B/C family protein
211	 42.41	0	220037..222880	-	947	16752502	-	CP0213	-	polymorphic membrane protein A family protein
212	 38.28	0	223071..223373	-	100	16752503	-	CP0214	-	hypothetical protein
213	 38.61	0	223393..223752	-	119	16752504	-	CP0215	-	hypothetical protein
214	 42.81	0	223891..225240	-	449	16752505	-	CP0216	-	sodium/alanine symporter family protein
215	 36.69	-1	225286..225792	-	168	16752506	lspA	CP0217	-	lipoprotein signal peptidase
216	 39.10	0	225798..226196	-	132	16752507	-	CP0218	-	hypothetical protein
217	 38.13	0	226197..226655	-	152	16752508	-	CP0219	-	transcriptional regulator NrdR
218	 38.31	0	226911..227513	+	200	16752509	-	CP0220	-	riboflavin synthase subunit alpha
219	 43.24	0	227516..228343	+	275	16752510	-	CP0221	-	hypothetical protein
220	 38.60	0	228331..229128	+	265	16752511	-	CP0222	-	spoU rRNA methylase family protein
221	 43.81	0	229326..230423	+	365	16752512	lpxK	CP0223	-	tetraacyldisaccharide 4'-kinase
222	 42.17	0	230423..231667	+	414	16752513	-	CP0224	-	sodium:dicarboxylate symporter family protein
223	 43.91	0	231681..232862	+	393	16752514	-	CP0225	-	branched-chain alpha-keto acid dehydrogenase subunit E2
224	 41.11	0	232889..233878	+	329	16752515	-	CP0226	-	carbohydrate isomerase KpsF/GutQ family protein
225	 40.95	0	234013..234117	+	34	16752516	-	CP0227	-	hypothetical protein
226	 37.91	0	234299..235063	-	254	16752517	-	CP0228	-	hypothetical protein
227	 41.76	0	235403..236482	-	359	16752518	-	CP0229	-	hypothetical protein
228	 45.65	+1	236530..236862	-	110	16752519	-	CP0230	-	hypothetical protein
229	 42.26	0	236927..237598	-	223	16752520	hemD	CP0231	-	uroporphyrinogen-III synthase
230	 42.17	0	237854..239347	+	497	16752521	glyA	CP0232	-	serine hydroxymethyltransferase
231	 40.45	0	239367..239942	+	191	16752522	-	CP0233	-	ATP-dependent Clp protease proteolytic subunit
232	 43.67	0	239911..240684	+	257	16752523	dapF	CP0234	-	diaminopimelate epimerase
233	 38.36	0	240782..241756	+	324	16752524	-	CP0235	-	hypothetical protein
234	 45.00	+1	241954..242793	+	279	16752525	-	CP0236	-	hypothetical protein
235	 45.11	+1	242771..244333	+	520	16752526	-	CP0237	-	hypothetical protein
236	 44.68	+1	244401..245114	-	237	16752527	ubiE	CP0238	-	ubiquinone/menaquinone biosynthesis methyltransferase
237	 45.53	+1	245062..245856	-	264	16752528	-	CP0239	-	hypothetical protein
238	 43.06	0	245829..246938	-	369	16752529	-	CP0240	-	hypothetical protein
239	 44.02	+1	246910..247143	-	77	16752530	-	CP0241	-	hypothetical protein
240	 44.71	+1	247170..249032	-	620	16752531	-	CP0242	-	hypothetical protein
241	 39.60	0	249094..249444	-	116	16752532	-	CP0243	-	anti-anti-sigma factor
242	 43.99	+1	249609..250772	-	387	16752533	-	CP0244	-	hemolysin, putative
243	 38.78	0	250774..251250	-	158	16752534	-	CP0245	-	hypothetical protein
244	 38.89	0	251282..251443	-	53	16752535	-	CP0246	-	hypothetical protein
245	 40.61	0	251742..252524	-	260	16752536	-	CP0247	-	hypothetical protein
246	 46.02	+1	252476..253066	-	196	16752537	-	CP0248	-	DNA-3-methyladenine glycosylase
247	 42.98	0	253068..255098	-	676	16752538	-	CP0249	-	VacB/Rnb family exoribonuclease
248	 30.48	-2	255287..255391	+	34	16752539	-	CP0250	-	hypothetical protein
249	 42.21	0	255369..257351	-	660	16752540	dnaK	CP0251	-	molecular chaperone DnaK
250	 38.20	0	257381..257935	-	184	16752541	-	CP0252	-	heat shock protein GrpE, putative
251	 40.03	0	257932..259155	-	407	16752542	hrcA	CP0253	-	heat-inducible transcription repressor
252	 45.40	+1	259220..260926	-	568	16752543	-	CP0254	-	prolyl-tRNA synthetase
253	 46.20	+1	261226..262383	+	385	16752544	-	CP0255	-	hypothetical protein
254	 43.29	0	262551..263504	+	317	16752545	-	CP0256	-	hypothetical protein
255	 37.73	0	263497..263769	+	90	16752546	-	CP0257	-	hypothetical protein
256	 40.86	0	263771..264793	-	340	16752547	-	CP0258	-	hypothetical protein
257	 43.13	0	264790..265983	-	397	16752548	-	CP0259	-	L,L-diaminopimelate aminotransferase
258	 45.50	+1	266222..266443	+	73	16752549	-	CP0260	-	hypothetical protein
259	 44.44	+1	266582..266734	+	50	16752550	-	CP0261	-	hypothetical protein
260	 42.95	0	266779..266934	-	51	16752551	-	CP0262	-	hypothetical protein
261	 42.90	0	267021..268253	+	410	16752552	-	CP0263	-	hypothetical protein
262	 43.88	0	268250..270307	-	685	16752553	-	CP0264	-	hypothetical protein
263	 39.87	0	270591..271493	+	300	16752554	-	CP0265	-	hypothetical protein
264	 40.48	0	271445..271822	+	125	16752555	-	CP0266	-	HIT family protein
265	 44.73	+1	271846..273477	+	543	16752556	-	CP0267	-	hypothetical protein
266	 45.24	+1	273850..275184	+	444	16752557	-	CP0268	-	sodium:solute symporter family protein
267	 41.03	0	275354..275548	-	64	16752558	-	CP0269	-	hypothetical protein
268	 48.83	+2	275759..276616	-	285	16752559	-	CP0270	-	3-deoxy-7-phosphoheptulonate synthase
269	 43.17	0	276619..279720	-	1033	16752560	-	CP0271	-	hypothetical protein
270	 41.15	0	279849..280628	+	259	16752561	-	CP0272	-	amino acid ABC transporter, periplasmic amino acid-binding protein
271	 44.60	+1	282284..282940	+	218	16752562	-	CP0274	-	hypothetical protein
272	 42.19	0	283162..283974	+	270	16752563	-	CP0275	-	metal-dependent hydrolase, putative
273	 43.90	0	283962..285380	+	472	16752564	-	CP0276	-	GTP-binding protein HflX, putative
274	 43.05	0	285481..286746	+	421	16752565	-	CP0277	-	hypothetical protein
275	 45.76	+1	286743..287732	+	329	16752566	-	CP0278	-	hypothetical protein
276	 45.77	+1	287743..289905	+	720	16752567	-	CP0279	-	glycogen branching enzyme
277	 45.08	+1	290014..291783	+	589	16752568	-	CP0280	-	hypothetical protein
278	 46.43	+1	291994..293520	+	508	16752569	-	CP0281	-	hypothetical protein
279	 46.61	+1	293682..296009	+	775	16752570	-	CP0282	-	hypothetical protein
280	 41.46	0	296183..299023	-	946	16752571	-	CP0283	-	polymorphic membrane protein E/F family protein
281	 43.58	0	302150..305008	-	952	16752572	-	CP0285	-	polymorphic membrane protein E/F family protein
282	 44.02	+1	305047..307863	-	938	16752573	-	CP0286	-	polymorphic membrane protein E/F family protein
283	 44.06	+1	308375..308719	+	114	16752574	-	CP0287	-	hypothetical protein
284	 43.12	0	308745..309224	+	159	16752575	-	CP0288	-	hypothetical protein
285	 42.56	0	309230..310399	+	389	16752576	-	CP0289	-	hypothetical protein
286	 43.44	0	310535..312553	+	672	16752577	-	CP0290	-	hypothetical protein
287	 44.36	+1	312949..313746	+	265	16752578	-	CP0291	-	hypothetical protein
288	 43.08	0	313747..314598	+	283	16752579	-	CP0292	-	hypothetical protein
40.53	MEAN

3.43	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.