IslandPath Analysis: Chlamydophila pneumoniae AR39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.53   STD DEV: 3.43
Chlamydophila pneumoniae AR39, complete genome - 1..1229853
1112 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
144	 35.82	-1	147480..148484	+	334	16752438	-	CP0145	-	hypothetical protein
145	 38.94	0	148532..148852	+	106	16752439	-	CP0146	-	hypothetical protein
146	 41.41	0	149015..149212	+	65	16753079	-	CP0147	-	hypothetical protein
147	 37.65	0	149438..149761	+	107	16752440	-	CP0148	-	hypothetical protein
148	 41.67	0	149783..151906	+	707	16752441	-	CP0149	-	peptide ABC transporter, periplasmic peptide-binding protein, putative
149	 40.82	0	151888..153369	+	493	16752442	-	CP0150	-	peptide ABC transporter, permease protein, putative
150	 43.45	0	153370..155109	+	579	16752443	-	CP0151	-	peptide ABC transporter, permease protein, putative
151	 43.87	0	155125..155646	-	173	16752444	-	CP0152	-	DNA methyltransferase
152	 42.70	0	155656..156627	-	323	16752445	-	CP0153	-	hypothetical protein
153	 43.93	0	156624..159002	-	792	16752446	pheT	CP0154	-	phenylalanyl-tRNA synthetase subunit beta
154	 42.15	0	159109..160197	+	362	16753068	-	CP0155	-	hypothetical protein
155	 43.61	0	160121..160441	-	106	16752447	-	CP0156	-	hypothetical protein
156	 42.70	0	160562..161212	-	216	16753069	-	CP0157	-	hypothetical protein
157	 37.50	0	161473..162072	+	199	16752448	-	CP0158	-	hypothetical protein
158	 41.37	0	162187..162945	-	252	16752449	recO	CP0159	-	DNA repair protein RecO
159	 43.59	0	162956..163501	-	181	16752450	-	CP0160	-	hypothetical protein
160	 43.38	0	163458..164144	-	228	16752451	-	CP0161	-	hypothetical protein
161	 44.73	+1	164399..165583	-	394	16752452	-	CP0162	-	sigma-54 dependent response regulator
162	 44.27	+1	165768..167723	+	651	16752453	-	CP0163	-	hypothetical protein
163	 41.96	0	167784..168908	-	374	16752454	-	CP0164	-	sensor histidine kinase
164	 36.76	-1	168865..169185	-	106	16752455	-	CP0165	-	hypothetical protein
165	 42.92	0	169405..170082	-	225	16752456	-	CP0166	-	hypothetical protein
166	 39.73	0	170109..170843	+	244	16752457	-	CP0167	-	HAD superfamily hydrolase
167	 44.15	+1	170789..171592	-	267	16752458	truA	CP0168	-	tRNA pseudouridine synthase A
168	 43.24	0	171589..172224	-	211	16752459	ispD	CP0169	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
169	 42.68	0	172217..173179	-	320	16752460	-	CP0170	-	hypothetical protein
170	 35.98	-1	173427..173690	-	87	16752461	-	CP0171	-	hypothetical protein
171	 37.18	0	173690..173845	+	51	16752462	-	CP0172	-	hypothetical protein
172	 39.73	0	175091..175606	+	171	16752463	-	CP0174	-	acetyltransferase
173	 40.54	0	175640..176194	+	184	16752464	-	CP0175	-	hypothetical protein
174	 41.14	0	176181..176897	+	238	16752465	-	CP0176	-	hypothetical protein
175	 46.52	+1	176966..179233	-	755	16752466	-	CP0177	-	hypothetical protein
176	 45.10	+1	179463..180839	+	458	16752467	-	CP0178	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
177	 41.22	0	180793..182478	-	561	16752468	argS	CP0179	-	arginyl-tRNA synthetase
178	 40.06	0	182483..183121	-	212	16752469	-	CP0180	-	1-acyl-sn-glycerol-3-phosphate acyltransferase, putative
179	 42.09	0	183118..183768	-	216	16752470	cmk	CP0181	-	cytidylate kinase
180	 40.02	0	183765..184691	-	308	16752471	-	CP0182	-	phosphatidate cytidylyltransferase, putative
181	 39.82	0	184692..185477	-	261	16752472	-	CP0183	-	hypothetical protein
182	 39.33	0	185532..185681	-	49	16752473	-	CP0184	-	hypothetical protein
183	 43.42	0	185955..187055	+	366	16752474	-	CP0185	-	hypothetical protein
184	 40.63	0	187235..191443	+	1402	16752475	-	CP0186	-	bifunctional preprotein translocase subunit SecD/SecF
185	 43.35	0	191529..193295	+	588	16752476	-	CP0187	-	single-stranded-DNA-specific exonuclease RecJ
186	 43.14	0	193549..194670	+	373	16752477	-	CP0188	-	hypothetical protein
187	 39.48	0	195181..195717	+	178	16752478	-	CP0189	-	hypothetical protein
188	 45.52	+1	195973..197490	+	505	16752479	gltX	CP0190	-	glutamyl-tRNA synthetase
189	 36.51	-1	197655..197843	-	62	16752480	-	CP0191	-	hypothetical protein
190	 20.37	-2	198101..198208	+	35	16752481	-	CP0192	-	hypothetical protein
191	 41.39	0	198285..198557	+	90	16752482	omcA	CP0193	-	OmcA
192	 35.90	-1	198621..198737	-	38	16752483	-	CP0194	-	hypothetical protein
193	 42.61	0	198724..200394	+	556	16752484	omcB	CP0195	-	60 kDa outer membrane protein
194	 41.12	0	200673..201263	+	196	16752485	srp	CP0196	-	hypothetical protein
195	 40.68	0	201341..203287	-	648	16752486	-	CP0197	-	tail-specific protease precursor, putative
196	 40.89	0	203441..203731	-	96	16752487	-	CP0198	-	hypothetical protein
197	 40.36	0	203838..204776	+	312	16752488	-	CP0199	-	hypothetical protein
198	 44.35	+1	204998..205369	+	123	16752489	rpsL	CP0200	-	30S ribosomal protein S12
199	 42.19	0	205417..205890	+	157	16752490	-	CP0201	-	30S ribosomal protein S7
200	 41.73	0	205924..208008	+	694	16752491	-	CP0202	-	elongation factor G
201	 39.31	0	208016..208333	+	105	16752492	rpsJ	CP0203	-	30S ribosomal protein S10
202	 40.13	0	208354..209397	+	347	16752493	-	CP0204	-	oxidoreductase
203	 41.81	0	209394..209924	-	176	16752494	ispF	CP0205	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
204	 40.50	0	210356..210676	+	106	16752495	rplU	CP0206	-	50S ribosomal protein L21
205	 45.10	+1	210701..210955	+	84	16752496	rpmA	CP0207	-	50S ribosomal protein L27
206	 45.34	+1	211056..212063	+	335	161353773	obgE	CP0208	-	GTPase ObgE
207	 41.84	0	211979..212860	-	293	16752498	-	CP0209	-	ABC transporter, permease protein
208	 41.33	0	212845..213582	-	245	16752499	-	CP0210	-	ABC transporter, ATP-binding protein
209	 39.55	0	213579..214415	-	278	16752500	-	CP0211	-	ABC transporter, periplasmic substrate-binding protein, putative
210	 43.05	0	214720..219918	-	1732	16752501	-	CP0212	-	polymorphic membrane protein B/C family protein
211	 42.41	0	220037..222880	-	947	16752502	-	CP0213	-	polymorphic membrane protein A family protein
212	 38.28	0	223071..223373	-	100	16752503	-	CP0214	-	hypothetical protein
213	 38.61	0	223393..223752	-	119	16752504	-	CP0215	-	hypothetical protein
214	 42.81	0	223891..225240	-	449	16752505	-	CP0216	-	sodium/alanine symporter family protein
215	 36.69	-1	225286..225792	-	168	16752506	lspA	CP0217	-	lipoprotein signal peptidase
216	 39.10	0	225798..226196	-	132	16752507	-	CP0218	-	hypothetical protein
217	 38.13	0	226197..226655	-	152	16752508	-	CP0219	-	transcriptional regulator NrdR
218	 38.31	0	226911..227513	+	200	16752509	-	CP0220	-	riboflavin synthase subunit alpha
219	 43.24	0	227516..228343	+	275	16752510	-	CP0221	-	hypothetical protein
220	 38.60	0	228331..229128	+	265	16752511	-	CP0222	-	spoU rRNA methylase family protein
221	 43.81	0	229326..230423	+	365	16752512	lpxK	CP0223	-	tetraacyldisaccharide 4'-kinase
222	 42.17	0	230423..231667	+	414	16752513	-	CP0224	-	sodium:dicarboxylate symporter family protein
223	 43.91	0	231681..232862	+	393	16752514	-	CP0225	-	branched-chain alpha-keto acid dehydrogenase subunit E2
224	 41.11	0	232889..233878	+	329	16752515	-	CP0226	-	carbohydrate isomerase KpsF/GutQ family protein
225	 40.95	0	234013..234117	+	34	16752516	-	CP0227	-	hypothetical protein
226	 37.91	0	234299..235063	-	254	16752517	-	CP0228	-	hypothetical protein
227	 41.76	0	235403..236482	-	359	16752518	-	CP0229	-	hypothetical protein
228	 45.65	+1	236530..236862	-	110	16752519	-	CP0230	-	hypothetical protein
229	 42.26	0	236927..237598	-	223	16752520	hemD	CP0231	-	uroporphyrinogen-III synthase
230	 42.17	0	237854..239347	+	497	16752521	glyA	CP0232	-	serine hydroxymethyltransferase
231	 40.45	0	239367..239942	+	191	16752522	-	CP0233	-	ATP-dependent Clp protease proteolytic subunit
232	 43.67	0	239911..240684	+	257	16752523	dapF	CP0234	-	diaminopimelate epimerase
233	 38.36	0	240782..241756	+	324	16752524	-	CP0235	-	hypothetical protein
234	 45.00	+1	241954..242793	+	279	16752525	-	CP0236	-	hypothetical protein
235	 45.11	+1	242771..244333	+	520	16752526	-	CP0237	-	hypothetical protein
236	 44.68	+1	244401..245114	-	237	16752527	ubiE	CP0238	-	ubiquinone/menaquinone biosynthesis methyltransferase
237	 45.53	+1	245062..245856	-	264	16752528	-	CP0239	-	hypothetical protein
238	 43.06	0	245829..246938	-	369	16752529	-	CP0240	-	hypothetical protein
239	 44.02	+1	246910..247143	-	77	16752530	-	CP0241	-	hypothetical protein
240	 44.71	+1	247170..249032	-	620	16752531	-	CP0242	-	hypothetical protein
241	 39.60	0	249094..249444	-	116	16752532	-	CP0243	-	anti-anti-sigma factor
242	 43.99	+1	249609..250772	-	387	16752533	-	CP0244	-	hemolysin, putative
243	 38.78	0	250774..251250	-	158	16752534	-	CP0245	-	hypothetical protein
40.53	MEAN

3.43	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.