IslandPathversion 1.0

IslandPath Analysis: Chlamydophila pneumoniae AR39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.53 STD DEV: 3.43
Chlamydophila pneumoniae AR39, complete genome - 1..1229853
1112 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
98	 44.31	+1	109982..110983	+	333	16752392	-	CP0099	-	hypothetical protein
99	 41.36	0	111272..111931	+	219	16752393	rplC	CP0100	-	50S ribosomal protein L3
100	 36.89	-1	111964..112638	+	224	16752394	rplD	CP0101	-	50S ribosomal protein L4
101	 38.39	0	112655..112990	+	111	16752395	rplW	CP0102	-	50S ribosomal protein L23
102	 42.22	0	113012..113866	+	284	16752396	rplB	CP0103	-	50S ribosomal protein L2
103	 38.20	0	113872..114138	+	88	16752397	rpsS	CP0104	-	30S ribosomal protein S19
104	 41.67	0	114157..114492	+	111	16752398	rplV	CP0105	-	50S ribosomal protein L22
105	 41.82	0	114508..115179	+	223	16752399	rpsC	CP0106	-	30S ribosomal protein S3
106	 41.49	0	115208..115624	+	138	16752400	rplP	CP0107	-	50S ribosomal protein L16
107	 35.62	-1	115627..115845	+	72	16752401	rpmC	CP0108	-	50S ribosomal protein L29
108	 37.16	0	115838..116098	+	86	16752402	rpsQ	CP0109	-	30S ribosomal protein S17
109	 36.86	-1	116121..116489	+	122	16752403	rplN	CP0110	-	50S ribosomal protein L14
110	 39.58	0	116503..116838	+	111	16752404	rplX	CP0111	-	50S ribosomal protein L24
111	 37.75	0	116840..117382	+	180	16752405	rplE	CP0112	-	50S ribosomal protein L5
112	 41.54	0	117400..117801	+	133	16752406	rpsH	CP0113	-	30S ribosomal protein S8
113	 39.67	0	117828..118379	+	183	16752407	rplF	CP0114	-	50S ribosomal protein L6
114	 37.10	-1	118390..118761	+	123	16752408	rplR	CP0115	-	50S ribosomal protein L18
115	 39.16	0	118779..119276	+	165	16752409	rpsE	CP0116	-	30S ribosomal protein S5
116	 39.08	0	119269..119703	+	144	16752410	rplO	CP0117	-	50S ribosomal protein L15
117	 39.74	0	119728..121101	+	457	161353774	secY	CP0118	-	preprotein translocase subunit SecY
118	 37.40	0	121157..121525	+	122	16752412	rpsM	CP0119	-	30S ribosomal protein S13
119	 41.54	0	121547..121948	+	133	16752413	-	CP0120	-	30S ribosomal protein S11
120	 37.16	0	121918..123093	+	391	16752414	-	CP0121	-	DNA-directed RNA polymerase subunit alpha
121	 35.90	-1	123100..123528	+	142	16752415	rplQ	CP0122	-	50S ribosomal protein L17
122	 38.69	0	123570..124577	+	335	16752416	-	CP0123	-	glyceraldehyde-3-phosphate dehydrogenase
123	 40.89	0	124592..125425	+	277	16752417	-	CP0124	-	hypothetical protein
124	 38.32	0	125833..126795	+	320	16752418	-	CP0125	-	hypothetical protein
125	 42.41	0	126938..127444	+	168	16752419	ruvC	CP0126	-	Holliday junction resolvase
126	 41.35	0	127446..128069	+	207	16752420	ruvA	CP0127	-	Holliday junction DNA helicase motor protein
127	 40.69	0	128141..128575	+	144	16752421	ndk	CP0128	-	nucleoside diphosphate kinase
128	 39.97	0	128572..129279	-	235	16752422	-	CP0129	-	lipoate-protein ligase-related protein
129	 42.86	0	129266..131101	-	611	16752423	-	CP0130	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
130	 39.94	0	131445..132851	-	468	16752424	-	CP0131	-	replicative DNA helicase
131	 40.63	0	133448..133954	+	168	16752425	-	CP0132	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase protein, putative
132	 42.45	0	134183..135805	+	540	16752426	-	CP0133	-	ADP, ATP carrier protein
133	 41.62	0	135929..136930	+	333	16752427	-	CP0134	-	protease IV, putative
134	 38.08	0	136954..139566	+	870	16752428	-	CP0135	-	DNA polymerase I
135	 37.77	0	139560..140168	+	202	16752429	coaE	CP0136	-	dephospho-CoA kinase
136	 42.15	0	140165..141559	+	464	16752430	rho	CP0137	-	transcription termination factor Rho
137	 36.49	-1	141596..141880	-	94	16752431	-	CP0138	-	hypothetical protein
138	 41.55	0	141940..142572	+	210	16752432	-	CP0139	-	phosphoribosyl transferase family protein
139	 38.01	0	142690..144015	+	441	16752433	-	CP0140	-	glucose-1-phosphate adenylyltransferase
140	 42.91	0	144141..144881	+	246	16752434	-	CP0141	-	hypothetical protein
141	 39.04	0	144878..145438	+	186	16752435	-	CP0142	-	hypothetical protein
142	 38.91	0	145640..146392	+	250	16752436	-	CP0143	-	amino acid ABC transporter, periplasmic amino acid-binding protein
143	 41.46	0	146397..147380	-	327	16752437	hemH	CP0144	-	ferrochelatase
144	 35.82	-1	147480..148484	+	334	16752438	-	CP0145	-	hypothetical protein
145	 38.94	0	148532..148852	+	106	16752439	-	CP0146	-	hypothetical protein
146	 41.41	0	149015..149212	+	65	16753079	-	CP0147	-	hypothetical protein
147	 37.65	0	149438..149761	+	107	16752440	-	CP0148	-	hypothetical protein
148	 41.67	0	149783..151906	+	707	16752441	-	CP0149	-	peptide ABC transporter, periplasmic peptide-binding protein, putative
149	 40.82	0	151888..153369	+	493	16752442	-	CP0150	-	peptide ABC transporter, permease protein, putative
150	 43.45	0	153370..155109	+	579	16752443	-	CP0151	-	peptide ABC transporter, permease protein, putative
151	 43.87	0	155125..155646	-	173	16752444	-	CP0152	-	DNA methyltransferase
152	 42.70	0	155656..156627	-	323	16752445	-	CP0153	-	hypothetical protein
153	 43.93	0	156624..159002	-	792	16752446	pheT	CP0154	-	phenylalanyl-tRNA synthetase subunit beta
154	 42.15	0	159109..160197	+	362	16753068	-	CP0155	-	hypothetical protein
155	 43.61	0	160121..160441	-	106	16752447	-	CP0156	-	hypothetical protein
156	 42.70	0	160562..161212	-	216	16753069	-	CP0157	-	hypothetical protein
157	 37.50	0	161473..162072	+	199	16752448	-	CP0158	-	hypothetical protein
158	 41.37	0	162187..162945	-	252	16752449	recO	CP0159	-	DNA repair protein RecO
159	 43.59	0	162956..163501	-	181	16752450	-	CP0160	-	hypothetical protein
160	 43.38	0	163458..164144	-	228	16752451	-	CP0161	-	hypothetical protein
161	 44.73	+1	164399..165583	-	394	16752452	-	CP0162	-	sigma-54 dependent response regulator
162	 44.27	+1	165768..167723	+	651	16752453	-	CP0163	-	hypothetical protein
163	 41.96	0	167784..168908	-	374	16752454	-	CP0164	-	sensor histidine kinase
164	 36.76	-1	168865..169185	-	106	16752455	-	CP0165	-	hypothetical protein
165	 42.92	0	169405..170082	-	225	16752456	-	CP0166	-	hypothetical protein
166	 39.73	0	170109..170843	+	244	16752457	-	CP0167	-	HAD superfamily hydrolase
167	 44.15	+1	170789..171592	-	267	16752458	truA	CP0168	-	tRNA pseudouridine synthase A
168	 43.24	0	171589..172224	-	211	16752459	ispD	CP0169	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
169	 42.68	0	172217..173179	-	320	16752460	-	CP0170	-	hypothetical protein
170	 35.98	-1	173427..173690	-	87	16752461	-	CP0171	-	hypothetical protein
171	 37.18	0	173690..173845	+	51	16752462	-	CP0172	-	hypothetical protein
172	 39.73	0	175091..175606	+	171	16752463	-	CP0174	-	acetyltransferase
173	 40.54	0	175640..176194	+	184	16752464	-	CP0175	-	hypothetical protein
174	 41.14	0	176181..176897	+	238	16752465	-	CP0176	-	hypothetical protein
175	 46.52	+1	176966..179233	-	755	16752466	-	CP0177	-	hypothetical protein
176	 45.10	+1	179463..180839	+	458	16752467	-	CP0178	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
177	 41.22	0	180793..182478	-	561	16752468	argS	CP0179	-	arginyl-tRNA synthetase
178	 40.06	0	182483..183121	-	212	16752469	-	CP0180	-	1-acyl-sn-glycerol-3-phosphate acyltransferase, putative
179	 42.09	0	183118..183768	-	216	16752470	cmk	CP0181	-	cytidylate kinase
180	 40.02	0	183765..184691	-	308	16752471	-	CP0182	-	phosphatidate cytidylyltransferase, putative
181	 39.82	0	184692..185477	-	261	16752472	-	CP0183	-	hypothetical protein
182	 39.33	0	185532..185681	-	49	16752473	-	CP0184	-	hypothetical protein
183	 43.42	0	185955..187055	+	366	16752474	-	CP0185	-	hypothetical protein
184	 40.63	0	187235..191443	+	1402	16752475	-	CP0186	-	bifunctional preprotein translocase subunit SecD/SecF
185	 43.35	0	191529..193295	+	588	16752476	-	CP0187	-	single-stranded-DNA-specific exonuclease RecJ
186	 43.14	0	193549..194670	+	373	16752477	-	CP0188	-	hypothetical protein
187	 39.48	0	195181..195717	+	178	16752478	-	CP0189	-	hypothetical protein
188	 45.52	+1	195973..197490	+	505	16752479	gltX	CP0190	-	glutamyl-tRNA synthetase
189	 36.51	-1	197655..197843	-	62	16752480	-	CP0191	-	hypothetical protein
190	 20.37	-2	198101..198208	+	35	16752481	-	CP0192	-	hypothetical protein
191	 41.39	0	198285..198557	+	90	16752482	omcA	CP0193	-	OmcA
192	 35.90	-1	198621..198737	-	38	16752483	-	CP0194	-	hypothetical protein
193	 42.61	0	198724..200394	+	556	16752484	omcB	CP0195	-	60 kDa outer membrane protein
194	 41.12	0	200673..201263	+	196	16752485	srp	CP0196	-	hypothetical protein
195	 40.68	0	201341..203287	-	648	16752486	-	CP0197	-	tail-specific protease precursor, putative
196	 40.89	0	203441..203731	-	96	16752487	-	CP0198	-	hypothetical protein
197	 40.36	0	203838..204776	+	312	16752488	-	CP0199	-	hypothetical protein
40.53	MEAN

3.43	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.