IslandPath Analysis: Chlamydophila pneumoniae AR39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.53   STD DEV: 3.43
Chlamydophila pneumoniae AR39, complete genome - 1..1229853
1112 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
992	 42.95	0	1091720..1092520	+	266	16752178	-	CP1008	-	nifU protein, putative
993	 38.79	0	1092812..1093837	+	341	16752179	-	CP1009	-	type III secretion system protein
994	 43.39	0	1093854..1094390	+	178	16752180	-	CP1010	-	hypothetical protein
995	 44.62	+1	1094387..1095688	+	433	16752181	-	CP1011	-	type III secretion system ATPase
996	 31.98	-2	1095685..1096053	+	122	16752182	-	CP1012	-	hypothetical protein
997	 42.06	0	1096065..1097450	+	461	16752183	-	CP1013	-	UDP-N-acetylglucosamine pyrophosphorylase, putative
998	 45.27	+1	1097447..1098451	+	334	16752184	gpsA	CP1014	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
999	 43.19	0	1098605..1099639	+	344	16752185	-	CP1015	-	major outer membrane protein, putative
1000	 40.77	0	1099636..1100805	-	389	16752186	-	CP1016	-	hypothetical protein
1001	 40.42	0	1100826..1103126	-	766	16752187	-	CP1017	-	hypothetical protein
1002	 43.76	0	1103244..1105046	-	600	16752188	-	CP1018	-	phosphoenolpyruvate carboxykinase
1003	 43.14	0	1105049..1106149	-	366	16752189	-	CP1019	-	cell shape-determining protein MreB
1004	 40.59	0	1106154..1109654	-	1166	16752190	-	CP1020	-	SNF2 family helicase
1005	 39.20	0	1109940..1111268	+	442	16752191	tig	CP1021	-	trigger factor
1006	 45.10	+1	1111447..1112058	+	203	16752192	clpP	CP1022	-	ATP-dependent Clp protease proteolytic subunit
1007	 40.28	0	1112068..1113333	+	421	16752193	clpX	CP1023	-	ATP-dependent protease ATP-binding subunit
1008	 42.01	0	1113363..1114595	+	410	16752194	-	CP1024	-	poly(A) polymerase family protein
1009	 39.07	0	1114712..1116175	+	487	16752195	engA	CP1025	-	GTP-binding protein EngA
1010	 38.31	0	1116251..1116451	+	66	16753064	-	CP1026	-	hypothetical protein
1011	 41.40	0	1116520..1116705	-	61	16752196	-	CP1027	-	hypothetical protein
1012	 41.78	0	1116799..1119711	-	970	16752197	secA	CP1028	-	preprotein translocase subunit SecA
1013	 42.76	0	1119895..1121220	-	441	16752198	-	CP1029	-	hypothetical protein
1014	 39.96	0	1121280..1122185	-	301	16752199	-	CP1030	-	phosphatidylserine decarboxylase
1015	 43.49	0	1122336..1123664	+	442	16752200	trmE	CP1031	-	tRNA modification GTPase TrmE
1016	 42.22	0	1123671..1124300	+	209	16752201	-	CP1032	-	endonuclease III
1017	 39.55	0	1124485..1125723	+	412	16752202	-	CP1033	-	branched-chain amino acid transport system carrier protein, putative
1018	 40.84	0	1125753..1129400	+	1215	16752203	-	CP1034	-	Snf2/Rad54 family helicase
1019	 45.16	+1	1129425..1129889	-	154	16752204	-	CP1035	-	hypothetical protein
1020	 37.40	0	1129945..1130067	+	40	16752205	-	CP1036	-	hypothetical protein
1021	 43.94	0	1130313..1131698	+	461	16752206	-	CP1037	-	dihydrolipoamide dehydrogenase
1022	 45.67	+1	1131695..1132618	+	307	16752207	-	CP1038	-	lipoyl synthase
1023	 40.35	0	1133005..1133175	-	56	16752208	-	CP1039	-	hypothetical protein
1024	 40.38	0	1133394..1133606	+	70	16752209	-	CP1040	-	hypothetical protein
1025	 37.50	0	1133480..1133791	-	103	16752210	-	CP1041	-	hypothetical protein
1026	 37.63	0	1134141..1134698	-	185	16752211	-	CP1042	-	hypothetical protein
1027	 43.06	0	1135171..1136178	+	335	16752212	-	CP1043	-	type III secretion protein SctJ
1028	 39.57	0	1136178..1137011	+	277	16752213	-	CP1044	-	hypothetical protein
1029	 38.89	0	1137132..1137833	+	233	16752214	-	CP1045	-	type III secretion system protein
1030	 42.02	0	1137848..1138768	+	306	16752215	-	CP1046	-	type III secretion system protein
1031	 38.54	0	1138780..1139067	+	95	16752216	-	CP1047	-	type III secretion inner membrane protein SctS
1032	 42.76	0	1139075..1139944	+	289	16752217	-	CP1048	-	type III secretion inner membrane protein SctT
1033	 40.04	0	1140210..1140686	-	158	16752218	-	CP1049	-	hypothetical protein
1034	 42.19	0	1140771..1141775	-	334	16752219	-	CP1050	-	hypothetical protein
1035	 39.81	0	1141780..1142304	-	174	16752220	-	CP1051	-	hypothetical protein
1036	 43.45	0	1142307..1142741	-	144	16752221	-	CP1052	-	hypothetical protein
1037	 39.25	0	1142757..1143128	-	123	16752222	-	CP1053	-	hypothetical protein
1038	 43.96	+1	1143152..1144327	-	391	16752223	-	CP1054	-	general secretion pathway protein F
1039	 45.34	+1	1144337..1145827	-	496	16752224	-	CP1055	-	general secretion pathway protein E
1040	 43.97	+1	1145817..1148081	-	754	16752225	-	CP1056	-	general secretion pathway protein D
1041	 46.65	+1	1148082..1149335	-	417	16752226	-	CP1057	-	hypothetical protein
1042	 44.19	+1	1149505..1150572	-	355	16752227	-	CP1058	-	proline dipeptidase
1043	 42.86	0	1150577..1152319	-	580	16752228	mutL	CP1059	-	DNA mismatch repair protein
1044	 40.80	0	1152542..1153237	+	231	16752229	-	CP1060	-	type III secretion chaperone SycD
1045	 40.22	0	1153258..1153620	+	120	16752230	-	CP1061	-	hypothetical protein
1046	 46.28	+1	1153657..1155123	+	488	16752231	-	CP1062	-	hypothetical protein
1047	 45.47	+1	1155156..1156490	+	444	16752232	-	CP1063	-	hypothetical protein
1048	 41.50	0	1156561..1157478	-	305	16752233	-	CP1064	-	hypothetical protein
1049	 42.09	0	1157672..1159579	+	635	16752234	thrS	CP1065	-	threonyl-tRNA synthetase
1050	 42.19	0	1159612..1160379	+	255	16752235	-	CP1066	-	ParA family protein
1051	 40.64	0	1160384..1161136	+	250	16752236	-	CP1067	-	virulence protein pGP6-D-related protein
1052	 35.86	-1	1161140..1161694	+	184	16752237	-	CP1068	-	hypothetical protein
1053	 42.90	0	1161703..1162737	+	344	16752238	-	CP1069	-	tryptophanyl-tRNA synthetase
1054	 43.82	0	1162746..1164719	+	657	16752239	-	CP1070	-	excinuclease ABC subunit B
1055	 42.89	0	1164911..1166197	+	428	16752240	eno	CP1071	-	phosphopyruvate hydratase
1056	 42.29	0	1166457..1167506	+	349	16752241	-	CP1072	-	hypothetical protein
1057	 42.50	0	1167584..1168597	-	337	16752242	-	CP1073	-	hypothetical protein
1058	 45.63	+1	1168746..1169843	-	365	16752243	-	CP1074	-	hypothetical protein
1059	 42.86	0	1170100..1172124	-	674	16752244	-	CP1075	-	hypothetical protein
1060	 42.48	0	1172245..1173315	-	356	16752245	-	CP1076	-	hypothetical protein
1061	 43.88	0	1173436..1174269	-	277	16752246	-	CP1077	-	hypothetical protein
1062	 28.79	-2	1174422..1174553	-	43	16752247	-	CP1078	-	hypothetical protein
1063	 40.67	0	1174620..1176527	+	635	16752248	-	CP1079	-	regulatory protein, putative
1064	 40.72	0	1176524..1178338	+	604	16752249	-	CP1080	-	hypothetical protein
1065	 42.24	0	1178393..1181335	+	980	16752250	-	CP1081	-	hypothetical protein
1066	 42.86	0	1181337..1182113	-	258	16752251	sdhB	CP1082	-	succinate dehydrogenase iron-sulfur subunit
1067	 44.23	+1	1182124..1184004	-	626	16752252	sdhA	CP1083	-	succinate dehydrogenase flavoprotein subunit
1068	 41.83	0	1184008..1184901	-	297	16752253	-	CP1084	-	succinate dehydrogenase, cytochrome b558 subunit, putative
1069	 43.89	0	1185039..1185824	-	261	16752254	-	CP1085	-	mttC protein, putative
1070	 43.68	0	1186147..1188291	-	714	16752255	-	CP1086	-	thiol:disulfide interchange protein DsbD
1071	 40.34	0	1188452..1189150	+	232	16752256	-	CP1087	-	MotA/TolQ/ExbB proton channel family protein
1072	 42.89	0	1189147..1189554	+	135	16752257	-	CP1088	-	ExbD/TolR family protein
1073	 41.44	0	1189558..1190346	+	262	16752258	-	CP1089	-	hypothetical protein
1074	 42.13	0	1190378..1191673	+	431	16752259	tolB	CP1090	-	translocation protein TolB
1075	 41.45	0	1191670..1192248	+	192	16752260	-	CP1091	-	peptidoglycan-associated lipoprotein
1076	 38.67	0	1192238..1192855	+	205	16752261	-	CP1092	-	putative endopeptidase lyte precursor
1077	 35.38	-1	1192962..1193351	+	129	16752262	-	CP1093	-	hypothetical protein
1078	 40.51	0	1193348..1193974	-	208	16752263	-	CP1094	-	anti-oxidant AhpCTSA family protein
1079	 43.07	0	1194262..1195842	-	526	16752264	groEL	CP1095	-	chaperonin GroEL
1080	 42.33	0	1195953..1197197	-	414	16752265	-	CP1096	-	hypothetical protein
1081	 41.38	0	1197412..1198032	+	206	16752266	-	CP1097	-	putative deoxyribonucleotide triphosphate pyrophosphatase
1082	 45.73	+1	1198015..1198248	-	77	16752267	-	CP1098	-	hypothetical protein
1083	 41.91	0	1198245..1198955	-	236	16752268	-	CP1099	-	uracil-DNA glycosylase
1084	 40.26	0	1199058..1200977	+	639	16752269	-	CP1100	-	ATP-dependent helicase PcrA
1085	 41.04	0	1200980..1202302	+	440	16752270	-	CP1101	-	RNA polymerase factor sigma-54
1086	 42.14	0	1202309..1203103	-	264	16752271	-	CP1102	-	hypothetical protein
1087	 40.56	0	1203710..1206325	+	871	16752272	-	CP1103	-	fused DNA topoisomerase I/SWI domain-containing protein
1088	 43.45	0	1206277..1207284	-	335	16752273	-	CP1104	-	hypothetical protein
1089	 36.36	-1	1207263..1207559	-	98	16752274	-	CP1105	-	hypothetical protein
1090	 42.03	0	1207661..1209052	+	463	16752275	-	CP1106	-	hypothetical protein
1091	 38.63	0	1209061..1209645	+	194	16752276	-	CP1107	-	hypothetical protein
40.53	MEAN

3.43	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.