IslandPath Analysis: Chlamydophila pneumoniae AR39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.53   STD DEV: 3.43
Chlamydophila pneumoniae AR39, complete genome - 1..1229853
1112 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
953	 41.89	0	1042705..1043592	+	295	16752139	-	CP0969	-	hypothetical protein
954	 38.29	0	1043617..1043838	-	73	16752140	-	CP0970	-	hypothetical protein
955	 42.58	0	1043882..1044454	-	190	16752141	-	CP0971	-	elongation factor P
956	 41.61	0	1044676..1045557	+	293	16752142	-	CP0972	-	AMP nucleosidase
957	 42.64	0	1045551..1047548	-	665	16752143	-	CP0973	-	transketolase
958	 42.42	0	1047781..1050399	+	872	16752144	alaS	CP0974	-	alanyl-tRNA synthetase
959	 41.31	0	1050369..1053626	+	1085	16752145	-	CP0975	-	transcription-repair coupling factor
960	 40.30	0	1053637..1054626	+	329	16752146	hemE	CP0976	-	uroporphyrinogen decarboxylase
961	 40.38	0	1054607..1055983	+	458	16752147	-	CP0977	-	coproporphyrinogen III oxidase
962	 43.88	0	1056019..1057326	+	435	16752148	-	CP0978	-	protoporphyrinogen oxidase
963	 42.04	0	1057282..1059750	-	822	16752149	-	CP0979	-	hypothetical protein
964	 38.17	0	1060166..1060537	+	123	16752150	-	CP0980	-	histone H1-like protein HC1
965	 40.71	0	1060807..1062012	+	401	16752151	-	CP0981	-	RNA methyltransferase
966	 38.42	0	1062083..1062436	+	117	16752152	yajC	CP0982	-	preprotein translocase subunit YajC
967	 40.43	0	1062577..1063872	+	431	16752153	-	CP0983	-	Na(+)-translocating NADH-quinone reductase subunit F
968	 41.47	0	1064035..1064931	-	298	16752154	-	CP0984	-	hypothetical protein
969	 44.25	+1	1065045..1065392	+	115	16752155	-	CP0985	-	hypothetical protein
970	 42.67	0	1065230..1065775	-	181	16752156	-	CP0986	-	hypothetical protein
971	 47.47	+2	1066555..1067205	+	216	16752157	-	CP0987	-	hypothetical protein
972	 48.43	+2	1069264..1069422	+	52	16752158	-	CP0988	-	hypothetical protein
973	 39.07	0	1071581..1074001	+	806	16752159	-	CP0989	-	cell division protein FtsK, putative
974	 39.47	0	1074003..1074800	+	265	16752160	-	CP0990	-	hypothetical protein
975	 41.74	0	1074788..1075453	+	221	16752161	-	CP0991	-	hypothetical protein
976	 44.59	+1	1075457..1075909	-	150	16752162	-	CP0992	-	hypothetical protein
977	 43.86	0	1075922..1077298	-	458	16752163	-	CP0993	-	sodium/alanine symporter family protein
978	 42.20	0	1077417..1078070	-	217	16752164	-	CP0994	-	hypothetical protein
979	 42.22	0	1078335..1079696	+	453	16752165	-	CP0995	-	hypothetical protein
980	 41.94	0	1079745..1080209	-	154	16752166	ribH	CP0996	-	riboflavin synthase subunit beta
981	 42.80	0	1080223..1081479	-	418	16752167	-	CP0997	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
982	 45.62	+1	1081540..1082670	-	376	16752168	-	CP0998	-	riboflavin-specific deaminase
983	 42.37	0	1082714..1083997	+	427	16752169	-	CP0999	-	seryl-tRNA synthetase
984	 39.22	0	1084041..1084787	+	248	16752170	-	CP1000	-	hypothetical protein
985	 41.91	0	1084724..1086775	+	683	16752171	-	CP1001	-	cation transporter E1-E2 family ATPase
986	 42.37	0	1086772..1087911	-	379	16752172	-	CP1002	-	cell shape-determining protein MrdB
987	 41.62	0	1087951..1088529	+	192	16752173	-	CP1003	-	biotin--protein ligase
988	 42.42	0	1088497..1089024	-	175	16752174	-	CP1004	-	hypothetical protein
989	 42.66	0	1089065..1089772	-	235	16752175	-	CP1005	-	ribosomal large subunit pseudouridine synthase B
990	 39.45	0	1089928..1090614	+	228	16752176	-	CP1006	-	phosphoglyceromutase
991	 43.98	+1	1090569..1091723	+	384	16752177	-	CP1007	-	nifS protein, putative
992	 42.95	0	1091720..1092520	+	266	16752178	-	CP1008	-	nifU protein, putative
993	 38.79	0	1092812..1093837	+	341	16752179	-	CP1009	-	type III secretion system protein
994	 43.39	0	1093854..1094390	+	178	16752180	-	CP1010	-	hypothetical protein
995	 44.62	+1	1094387..1095688	+	433	16752181	-	CP1011	-	type III secretion system ATPase
996	 31.98	-2	1095685..1096053	+	122	16752182	-	CP1012	-	hypothetical protein
997	 42.06	0	1096065..1097450	+	461	16752183	-	CP1013	-	UDP-N-acetylglucosamine pyrophosphorylase, putative
998	 45.27	+1	1097447..1098451	+	334	16752184	gpsA	CP1014	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
999	 43.19	0	1098605..1099639	+	344	16752185	-	CP1015	-	major outer membrane protein, putative
1000	 40.77	0	1099636..1100805	-	389	16752186	-	CP1016	-	hypothetical protein
1001	 40.42	0	1100826..1103126	-	766	16752187	-	CP1017	-	hypothetical protein
1002	 43.76	0	1103244..1105046	-	600	16752188	-	CP1018	-	phosphoenolpyruvate carboxykinase
1003	 43.14	0	1105049..1106149	-	366	16752189	-	CP1019	-	cell shape-determining protein MreB
1004	 40.59	0	1106154..1109654	-	1166	16752190	-	CP1020	-	SNF2 family helicase
1005	 39.20	0	1109940..1111268	+	442	16752191	tig	CP1021	-	trigger factor
1006	 45.10	+1	1111447..1112058	+	203	16752192	clpP	CP1022	-	ATP-dependent Clp protease proteolytic subunit
1007	 40.28	0	1112068..1113333	+	421	16752193	clpX	CP1023	-	ATP-dependent protease ATP-binding subunit
1008	 42.01	0	1113363..1114595	+	410	16752194	-	CP1024	-	poly(A) polymerase family protein
1009	 39.07	0	1114712..1116175	+	487	16752195	engA	CP1025	-	GTP-binding protein EngA
1010	 38.31	0	1116251..1116451	+	66	16753064	-	CP1026	-	hypothetical protein
1011	 41.40	0	1116520..1116705	-	61	16752196	-	CP1027	-	hypothetical protein
1012	 41.78	0	1116799..1119711	-	970	16752197	secA	CP1028	-	preprotein translocase subunit SecA
1013	 42.76	0	1119895..1121220	-	441	16752198	-	CP1029	-	hypothetical protein
1014	 39.96	0	1121280..1122185	-	301	16752199	-	CP1030	-	phosphatidylserine decarboxylase
1015	 43.49	0	1122336..1123664	+	442	16752200	trmE	CP1031	-	tRNA modification GTPase TrmE
1016	 42.22	0	1123671..1124300	+	209	16752201	-	CP1032	-	endonuclease III
1017	 39.55	0	1124485..1125723	+	412	16752202	-	CP1033	-	branched-chain amino acid transport system carrier protein, putative
1018	 40.84	0	1125753..1129400	+	1215	16752203	-	CP1034	-	Snf2/Rad54 family helicase
1019	 45.16	+1	1129425..1129889	-	154	16752204	-	CP1035	-	hypothetical protein
1020	 37.40	0	1129945..1130067	+	40	16752205	-	CP1036	-	hypothetical protein
1021	 43.94	0	1130313..1131698	+	461	16752206	-	CP1037	-	dihydrolipoamide dehydrogenase
1022	 45.67	+1	1131695..1132618	+	307	16752207	-	CP1038	-	lipoyl synthase
1023	 40.35	0	1133005..1133175	-	56	16752208	-	CP1039	-	hypothetical protein
1024	 40.38	0	1133394..1133606	+	70	16752209	-	CP1040	-	hypothetical protein
1025	 37.50	0	1133480..1133791	-	103	16752210	-	CP1041	-	hypothetical protein
1026	 37.63	0	1134141..1134698	-	185	16752211	-	CP1042	-	hypothetical protein
1027	 43.06	0	1135171..1136178	+	335	16752212	-	CP1043	-	type III secretion protein SctJ
1028	 39.57	0	1136178..1137011	+	277	16752213	-	CP1044	-	hypothetical protein
1029	 38.89	0	1137132..1137833	+	233	16752214	-	CP1045	-	type III secretion system protein
1030	 42.02	0	1137848..1138768	+	306	16752215	-	CP1046	-	type III secretion system protein
1031	 38.54	0	1138780..1139067	+	95	16752216	-	CP1047	-	type III secretion inner membrane protein SctS
1032	 42.76	0	1139075..1139944	+	289	16752217	-	CP1048	-	type III secretion inner membrane protein SctT
1033	 40.04	0	1140210..1140686	-	158	16752218	-	CP1049	-	hypothetical protein
1034	 42.19	0	1140771..1141775	-	334	16752219	-	CP1050	-	hypothetical protein
1035	 39.81	0	1141780..1142304	-	174	16752220	-	CP1051	-	hypothetical protein
1036	 43.45	0	1142307..1142741	-	144	16752221	-	CP1052	-	hypothetical protein
1037	 39.25	0	1142757..1143128	-	123	16752222	-	CP1053	-	hypothetical protein
1038	 43.96	+1	1143152..1144327	-	391	16752223	-	CP1054	-	general secretion pathway protein F
1039	 45.34	+1	1144337..1145827	-	496	16752224	-	CP1055	-	general secretion pathway protein E
1040	 43.97	+1	1145817..1148081	-	754	16752225	-	CP1056	-	general secretion pathway protein D
1041	 46.65	+1	1148082..1149335	-	417	16752226	-	CP1057	-	hypothetical protein
1042	 44.19	+1	1149505..1150572	-	355	16752227	-	CP1058	-	proline dipeptidase
1043	 42.86	0	1150577..1152319	-	580	16752228	mutL	CP1059	-	DNA mismatch repair protein
1044	 40.80	0	1152542..1153237	+	231	16752229	-	CP1060	-	type III secretion chaperone SycD
1045	 40.22	0	1153258..1153620	+	120	16752230	-	CP1061	-	hypothetical protein
1046	 46.28	+1	1153657..1155123	+	488	16752231	-	CP1062	-	hypothetical protein
1047	 45.47	+1	1155156..1156490	+	444	16752232	-	CP1063	-	hypothetical protein
1048	 41.50	0	1156561..1157478	-	305	16752233	-	CP1064	-	hypothetical protein
1049	 42.09	0	1157672..1159579	+	635	16752234	thrS	CP1065	-	threonyl-tRNA synthetase
1050	 42.19	0	1159612..1160379	+	255	16752235	-	CP1066	-	ParA family protein
1051	 40.64	0	1160384..1161136	+	250	16752236	-	CP1067	-	virulence protein pGP6-D-related protein
1052	 35.86	-1	1161140..1161694	+	184	16752237	-	CP1068	-	hypothetical protein
40.53	MEAN

3.43	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.