IslandPath Analysis: Chlorobium phaeobacteroides BS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.93   STD DEV: 4.12
Chlorobium phaeobacteroides BS1, complete genome - 1..2736403
2469 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
899	 50.46	0	1020232..1020669	+	145	189499899	-	Cphamn1_0943	-	deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
900	 45.46	0	1020737..1022179	-	480	189499900	-	Cphamn1_0944	-	two component, sigma54 specific, transcriptional regulator, Fis family
901	 47.39	0	1022281..1023084	-	267	189499901	-	Cphamn1_0945	-	hypothetical protein
902	 44.74	-1	1023223..1023336	-	37	189499902	-	Cphamn1_0946	-	hypothetical protein
903	 48.68	0	1023455..1024138	-	227	189499903	-	Cphamn1_0947	-	glycosyl transferase family 2
904	 51.83	0	1024135..1024734	-	199	189499904	-	Cphamn1_0948	-	hypothetical protein
905	 49.71	0	1024953..1026314	-	453	189499905	-	Cphamn1_0949	-	Carotene 7,8-desaturase
906	 46.77	0	1026418..1026618	-	66	189499906	-	Cphamn1_0950	-	hypothetical protein
907	 37.11	-2	1026732..1026890	+	52	189499907	-	Cphamn1_0951	-	hypothetical protein
908	 44.19	-1	1026916..1027440	+	174	189499908	-	Cphamn1_0952	-	transcriptional regulator, AsnC family
909	 48.60	0	1027496..1029637	+	713	189499909	-	Cphamn1_0953	-	glutamine synthetase catalytic region
910	 48.59	0	1029606..1029854	-	82	189499910	-	Cphamn1_0954	-	hypothetical protein
911	 50.48	0	1029865..1030284	-	139	189499911	-	Cphamn1_0955	-	protein of unknown function UPF0047
912	 56.08	+1	1030647..1032053	-	468	189499912	-	Cphamn1_0956	-	transposase IS4 family protein
913	 47.62	0	1032182..1032685	+	167	189499913	-	Cphamn1_0957	-	hypothetical protein
914	 50.19	0	1032712..1033494	+	260	189499914	-	Cphamn1_0958	-	putative transcriptional acitvator, Baf family
915	 50.00	0	1033634..1034713	-	359	189499915	-	Cphamn1_0959	-	3-dehydroquinate synthase
916	 45.33	0	1034710..1035309	-	199	189499916	-	Cphamn1_0960	-	Shikimate kinase
917	 54.96	+1	1035779..1037230	+	483	189499917	-	Cphamn1_0962	-	glycerol kinase
918	 56.06	+1	1037220..1038548	-	442	189499918	-	Cphamn1_0963	-	MiaB-like tRNA modifying enzyme YliG
919	 52.65	0	1038529..1039662	-	377	189499919	-	Cphamn1_0964	-	queuine tRNA-ribosyltransferase
920	 46.27	0	1039770..1040279	+	169	189499920	-	Cphamn1_0965	-	NusG antitermination factor
921	 51.71	0	1040307..1041329	+	340	189499921	-	Cphamn1_0966	-	NAD-dependent epimerase/dehydratase
922	 48.48	0	1041564..1042289	-	241	189499922	-	Cphamn1_0967	-	putative transcriptional regulator
923	 48.58	0	1042324..1043871	-	515	189499923	-	Cphamn1_0968	-	lysyl-tRNA synthetase
924	 46.90	0	1043932..1044867	-	311	189499924	-	Cphamn1_0969	-	Squalene/phytoene synthase
925	 47.39	0	1045072..1046373	+	433	189499925	-	Cphamn1_0970	-	GTP-binding proten HflX
926	 48.68	0	1046363..1046779	+	138	189499926	-	Cphamn1_0971	-	protein of unknown function UPF0054
927	 51.65	0	1047590..1048075	+	161	189499927	-	Cphamn1_0973	-	protein of unknown function DUF456
928	 46.10	0	1048605..1049411	-	268	189499928	-	Cphamn1_0974	-	protein of unknown function DUF164
929	 40.00	-2	1049717..1049896	-	59	189499929	-	Cphamn1_0975	-	ribosomal protein L33
930	 51.48	0	1050144..1051394	+	416	189499930	-	Cphamn1_0976	-	diaminopimelate decarboxylase
931	 48.30	0	1051483..1052364	-	293	189499931	-	Cphamn1_0977	-	5,10-methylenetetrahydrofolate reductase
932	 53.43	+1	1052450..1054618	+	722	189499932	-	Cphamn1_0978	-	ComEC/Rec2-related protein
933	 51.89	0	1054615..1054878	+	87	189499933	-	Cphamn1_0979	-	hypothetical protein
934	 51.82	0	1054875..1055204	+	109	189499934	-	Cphamn1_0980	-	Cupin 2 conserved barrel domain protein
935	 47.72	0	1055205..1055489	-	94	189499935	-	Cphamn1_0981	-	hypothetical protein
936	 51.31	0	1055508..1056041	-	177	189499936	-	Cphamn1_0982	-	NUDIX hydrolase
937	 48.66	0	1056044..1057531	-	495	189499937	-	Cphamn1_0983	-	binding-protein-dependent transport systems inner membrane component
938	 46.03	0	1057625..1058254	-	209	189499938	-	Cphamn1_0984	-	ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
939	 47.79	0	1058256..1059251	-	331	189499939	-	Cphamn1_0985	-	ribose-phosphate pyrophosphokinase
940	 48.76	0	1059387..1060475	+	362	189499940	-	Cphamn1_0986	-	UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
941	 49.91	0	1060730..1063390	-	886	189499941	-	Cphamn1_0987	-	glycoside hydrolase 15-related
942	 51.69	0	1063620..1063973	+	117	189499942	-	Cphamn1_0988	-	hypothetical protein
943	 48.77	0	1064038..1064523	+	161	189499943	-	Cphamn1_0989	-	hypothetical protein
944	 52.17	0	1064535..1065203	+	222	189499944	-	Cphamn1_0990	-	two component transcriptional regulator, winged helix family
945	 48.71	0	1065208..1066644	+	478	189499945	-	Cphamn1_0991	-	integral membrane sensor signal transduction histidine kinase
946	 49.17	0	1066740..1067282	+	180	189499946	-	Cphamn1_0992	-	hypothetical protein
947	 54.34	+1	1067289..1068164	+	291	189499947	-	Cphamn1_0993	-	hypothetical protein
948	 52.61	0	1068263..1068760	+	165	189499948	-	Cphamn1_0994	-	cytochrome c class I
949	 48.55	0	1068883..1069572	-	229	189499949	-	Cphamn1_0995	-	OmpA/MotB domain protein
950	 49.48	0	1069834..1070787	+	317	189499950	-	Cphamn1_0996	-	hypothetical protein
951	 47.20	0	1070792..1071274	-	160	189499951	-	Cphamn1_0997	-	membrane protein
952	 49.72	0	1071314..1072546	-	410	189499952	-	Cphamn1_0998	-	protein of unknown function DUF214
953	 49.36	0	1072746..1073999	-	417	189499953	-	Cphamn1_0999	-	protein of unknown function DUF214
954	 51.32	0	1074070..1074753	-	227	189499954	-	Cphamn1_1000	-	ABC transporter-related protein
955	 49.10	0	1074760..1076034	-	424	189499955	-	Cphamn1_1001	-	efflux transporter, RND family, MFP subunit
956	 47.93	0	1077568..1078122	-	184	189499956	-	Cphamn1_1003	-	hypothetical protein
957	 48.66	0	1078209..1079291	-	360	189499957	-	Cphamn1_1004	-	D-alanine/D-alanine ligase
958	 44.36	-1	1079384..1079791	-	135	189499958	-	Cphamn1_1005	-	CoA-binding domain protein
959	 46.36	0	1079989..1080579	+	196	189499959	-	Cphamn1_1006	-	hypothetical protein
960	 50.55	0	1080781..1081599	+	272	189499960	-	Cphamn1_1007	-	biotin/lipoate A/B protein ligase
961	 50.36	0	1081746..1082579	+	277	189499961	-	Cphamn1_1008	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
962	 49.22	0	1082657..1083430	+	257	189499962	-	Cphamn1_1009	-	CDP-diacylglycerol/serine O-phosphatidyltransferase
963	 47.06	0	1083628..1083882	+	84	189499963	-	Cphamn1_1010	-	phosphoribosylformylglycinamidine synthase, purS
964	 50.57	0	1083895..1084596	+	233	189499964	-	Cphamn1_1011	-	phosphoribosylformylglycinamidine synthase I
965	 48.56	0	1084653..1085939	+	428	189499965	-	Cphamn1_1012	-	major facilitator superfamily MFS_1
966	 48.75	0	1086312..1087595	+	427	189499966	-	Cphamn1_1013	-	ribonuclease BN
967	 50.71	0	1087670..1088866	+	398	189499967	-	Cphamn1_1014	-	DNA polymerase III, subunits gamma and tau
968	 45.60	0	1088989..1089477	+	162	189499968	-	Cphamn1_1015	-	DNA polymerase III, gamma/tau subunit
969	 51.67	0	1089562..1091388	+	608	189499969	-	Cphamn1_1016	-	aspartyl-tRNA synthetase
970	 49.35	0	1095455..1096453	+	332	189499970	-	Cphamn1_1018	-	putative PAS/PAC sensor protein
971	 56.08	+1	1096994..1098400	+	468	189499971	-	Cphamn1_1019	-	transposase IS4 family protein
972	 47.73	0	1099107..1099613	+	168	189499972	-	Cphamn1_1020	-	RNA polymerase, sigma-24 subunit, ECF subfamily
973	 51.47	0	1099649..1100872	-	407	189499973	-	Cphamn1_1021	-	NADH:flavin oxidoreductase/NADH oxidase
974	 54.14	+1	1100869..1101690	-	273	189499974	-	Cphamn1_1022	-	Methyltransferase type 11
975	 49.72	0	1102045..1103448	-	467	189499975	-	Cphamn1_1023	-	Radical SAM domain protein
976	 49.10	0	1103588..1104031	-	147	189499976	-	Cphamn1_1024	-	thioesterase superfamily protein
977	 50.72	0	1104494..1105252	-	252	189499977	-	Cphamn1_1025	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
978	 47.45	0	1105350..1106390	-	346	189499978	-	Cphamn1_1026	-	S-adenosylmethionine/tRNA-ribosyltransferase-isomerase
979	 50.22	0	1106534..1109689	-	1051	189499979	-	Cphamn1_1027	-	beta-phosphoglucomutase family hydrolase
980	 47.11	0	1109724..1110986	-	420	189499980	-	Cphamn1_1028	-	hypothetical protein
981	 50.00	0	1111103..1111756	-	217	189499981	-	Cphamn1_1029	-	dTMP kinase
982	 49.58	0	1111773..1112615	-	280	189499982	-	Cphamn1_1030	-	alpha/beta hydrolase fold
983	 56.13	+1	1113242..1113943	-	233	189499983	-	Cphamn1_1031	-	short-chain dehydrogenase/reductase SDR
984	 42.75	-1	1114081..1114218	+	45	189499984	-	Cphamn1_1032	-	hypothetical protein
985	 55.14	+1	1114265..1115965	+	566	189499985	-	Cphamn1_1033	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
986	 56.10	+1	1115967..1116818	+	283	189499986	-	Cphamn1_1034	-	pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit
987	 47.85	0	1116954..1117628	-	224	189499987	-	Cphamn1_1035	-	hypothetical protein
988	 51.80	0	1117625..1118095	-	156	189499988	-	Cphamn1_1036	-	hypothetical protein
989	 46.86	0	1118537..1119061	+	174	189499989	-	Cphamn1_1037	-	hypothetical protein
990	 57.08	+1	1119270..1120343	-	357	189499990	-	Cphamn1_1038	-	hypothetical protein
991	 54.94	+1	1120425..1120910	-	161	189499991	-	Cphamn1_1039	-	nuclease (SNase domain protein)
992	 53.23	+1	1120996..1122885	+	629	189499992	-	Cphamn1_1040	-	ABC transporter-related protein
993	 50.21	0	1122888..1125002	-	704	189499993	-	Cphamn1_1041	-	Prolyl oligopeptidase
994	 45.10	0	1125212..1126078	-	288	189499994	-	Cphamn1_1042	-	hypothetical protein
995	 50.60	0	1126360..1126938	-	192	189499995	-	Cphamn1_1043	-	NADPH-dependent FMN reductase
996	 51.20	0	1127202..1128242	-	346	189499996	-	Cphamn1_1044	-	pseudouridine synthase, RluA family
997	 52.70	0	1128308..1129717	+	469	189499997	-	Cphamn1_1045	-	dihydrolipoamide dehydrogenase
998	 49.22	0	1130178..1131329	+	383	189499998	-	Cphamn1_1046	-	magnesium chelatase ATPase subunit I
48.93	MEAN

4.12	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.