IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides BS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.93 STD DEV: 4.12
Chlorobium phaeobacteroides BS1, complete genome - 1..2736403
2469 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
725	 49.36	0	811308..811619	+	103	189499725	-	Cphamn1_0762	-	hypothetical protein
726	 53.31	+1	811774..812724	+	316	189499726	-	Cphamn1_0763	-	short-chain dehydrogenase/reductase SDR
727	 51.67	0	812760..814946	+	728	189499727	-	Cphamn1_0764	-	helicase, RecD/TraA family
728	 48.99	0	815203..817590	+	795	189499728	-	Cphamn1_0765	-	ribonuclease R
729	 50.09	0	817794..818957	-	387	189499729	-	Cphamn1_0766	-	sodium/hydrogen exchanger
730	 49.63	0	818978..820333	-	451	189499730	-	Cphamn1_0767	-	deoxyribodipyrimidine photolyase
731	 51.68	0	820347..821060	-	237	189499731	-	Cphamn1_0768	-	glutamine amidotransferase class-I
732	 53.43	+1	823092..824489	-	465	189499732	-	Cphamn1_0770	-	hypothetical protein
733	 44.86	0	825243..825806	+	187	189499733	-	Cphamn1_0771	-	hypothetical protein
734	 52.50	0	825822..826661	-	279	189499734	-	Cphamn1_0772	-	Integrase catalytic region
735	 47.77	0	826685..826975	-	96	189499735	-	Cphamn1_0773	-	transposase IS3/IS911 family protein
736	 45.18	0	826977..827744	+	255	189499736	-	Cphamn1_0774	-	hypothetical protein
737	 48.80	0	827762..828136	-	124	189499737	-	Cphamn1_0775	-	Rhodanese domain protein
738	 52.78	0	828873..830075	-	400	189499738	-	Cphamn1_0776	-	tryptophan synthase, beta subunit
739	 48.42	0	830267..832990	+	907	189499739	-	Cphamn1_0777	-	hypothetical protein
740	 49.94	0	833045..833917	-	290	189499740	-	Cphamn1_0778	-	alpha/beta hydrolase fold
741	 47.62	0	834063..834461	+	132	189499741	-	Cphamn1_0779	-	transcriptional regulator, BadM/Rrf2 family
742	 49.81	0	834631..837477	+	948	189499742	-	Cphamn1_0780	-	excinuclease ABC, A subunit
743	 43.43	-1	837593..837889	-	98	189499743	-	Cphamn1_0781	-	hypothetical protein
744	 45.14	0	838121..838408	+	95	189499744	-	Cphamn1_0782	-	chaperonin Cpn10
745	 50.27	0	838459..840111	+	550	189499745	-	Cphamn1_0783	-	chaperonin GroEL
746	 50.37	0	840276..840956	+	226	189499746	-	Cphamn1_0784	-	exsB protein
747	 46.09	0	841034..841723	+	229	189499747	-	Cphamn1_0785	-	Abortive infection protein
748	 51.30	0	841742..842548	+	268	189499748	-	Cphamn1_0786	-	tryptophan synthase, alpha subunit
749	 51.22	0	842558..843619	+	353	189499749	-	Cphamn1_0787	-	glycosyl transferase family 2
750	 51.48	0	843805..844851	-	348	189499750	-	Cphamn1_0788	-	NAD-dependent epimerase/dehydratase
751	 49.20	0	844907..845467	-	186	189499751	-	Cphamn1_0789	-	cyclase/dehydrase
752	 48.69	0	845460..846110	-	216	189499752	-	Cphamn1_0790	-	cyclase/dehydrase
753	 46.97	0	846121..846648	-	175	189499753	-	Cphamn1_0791	-	cyclase/dehydrase
754	 49.28	0	846790..848238	-	482	189499754	-	Cphamn1_0792	-	alpha amylase catalytic region
755	 53.87	+1	848427..848723	+	98	189499755	-	Cphamn1_0793	-	transcriptional coactivator/pterin dehydratase
756	 48.91	0	849177..851384	+	735	189499756	-	Cphamn1_0794	-	UvrD/REP helicase
757	 49.90	0	851554..852591	+	345	189499757	-	Cphamn1_0795	-	hypothetical protein
758	 46.97	0	852619..853212	+	197	189499758	-	Cphamn1_0796	-	leucyl/phenylalanyl-tRNA/protein transferase
759	 46.16	0	853310..854611	+	433	189499759	-	Cphamn1_0797	-	arsenite-activated ATPase ArsA
760	 46.60	0	854735..855616	+	293	189499760	-	Cphamn1_0798	-	enoyl-(acyl-carrier protein) reductase (NADH)
761	 51.49	0	855829..858048	+	739	189499761	-	Cphamn1_0799	-	isocitrate dehydrogenase, NADP-dependent
762	 51.75	0	858319..861804	+	1161	189499762	-	Cphamn1_0800	-	ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
763	 46.59	0	862260..863096	+	278	189499763	-	Cphamn1_0801	-	hypothetical protein
764	 50.11	0	863638..865413	+	591	189499764	-	Cphamn1_0802	-	hypothetical protein
765	 52.67	0	865377..867419	+	680	189499765	-	Cphamn1_0803	-	hypothetical protein
766	 47.88	0	867420..868244	+	274	189499766	-	Cphamn1_0804	-	hypothetical protein
767	 48.89	0	868698..868967	+	89	189499767	-	Cphamn1_0805	-	hypothetical protein
768	 49.81	0	868985..869245	+	86	189499768	-	Cphamn1_0806	-	plasmid stabilization system
769	 50.77	0	869339..870049	-	236	189499769	-	Cphamn1_0807	-	ABC transporter-related protein
770	 53.00	0	870189..871205	-	338	189499770	-	Cphamn1_0808	-	4-hydroxythreonine-4-phosphate dehydrogenase
771	 47.65	0	871219..871686	-	155	189499771	-	Cphamn1_0809	-	hypothetical protein
772	 50.79	0	871724..872995	-	423	189499772	-	Cphamn1_0810	-	Three-deoxy-D-manno-octulosonic-acid transferase domain protein
773	 47.79	0	874611..875108	+	165	189499773	-	Cphamn1_0811	-	hypothetical protein
774	 51.07	0	875503..877278	+	591	189499774	-	Cphamn1_0812	-	DEAD/DEAH box helicase domain protein
775	 53.33	+1	877387..878091	+	234	189499775	-	Cphamn1_0813	-	hypothetical protein
776	 49.78	0	878118..878579	+	153	189499776	-	Cphamn1_0814	-	hypothetical protein
777	 48.87	0	878855..880270	+	471	189499777	-	Cphamn1_0815	-	Endonuclease/exonuclease/phosphatase
778	 53.49	+1	880304..881692	+	462	189499778	-	Cphamn1_0816	-	beta-lactamase domain protein
779	 50.00	0	881714..882631	-	305	189499779	-	Cphamn1_0817	-	tyrosine recombinase XerD
780	 52.16	0	882648..883991	-	447	189499780	-	Cphamn1_0818	-	sun protein
781	 50.93	0	884203..885606	+	467	189499781	-	Cphamn1_0819	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
782	 53.26	+1	885691..886764	+	357	189499782	-	Cphamn1_0820	-	homoserine O-acetyltransferase
783	 49.29	0	887110..887604	+	164	189499783	-	Cphamn1_0821	-	DNA-binding protein
784	 48.43	0	887601..887759	+	52	189499784	-	Cphamn1_0822	-	type III restriction-modification system restriction subunit
785	 47.33	0	887860..888345	-	161	189499785	-	Cphamn1_0823	-	hypothetical protein
786	 49.44	0	888487..889467	-	326	189499786	-	Cphamn1_0824	-	sulfotransferase
787	 51.87	0	889630..890913	-	427	189499787	-	Cphamn1_0825	-	seryl-tRNA synthetase
788	 51.75	0	890934..891389	-	151	189499788	-	Cphamn1_0826	-	hypothetical protein
789	 44.00	-1	891392..891541	-	49	189499789	-	Cphamn1_0827	-	hypothetical protein
790	 50.55	0	891622..892353	-	243	189499790	-	Cphamn1_0828	-	short-chain dehydrogenase/reductase SDR
791	 46.74	0	892653..893711	+	352	189499791	-	Cphamn1_0829	-	transposase IS4 family protein
792	 45.02	0	893872..894162	+	96	189499792	-	Cphamn1_0830	-	cold-shock DNA-binding domain protein
793	 48.07	0	894243..894914	-	223	189499793	-	Cphamn1_0831	-	DNA repair protein RadC
794	 50.05	0	895274..896206	-	310	189499794	-	Cphamn1_0832	-	malate dehydrogenase, NAD-dependent
795	 48.24	0	896356..896610	-	84	189499795	-	Cphamn1_0833	-	ribosomal protein L27
796	 45.02	0	896650..896940	-	96	189499796	-	Cphamn1_0834	-	ribosomal protein L21
797	 47.59	0	897097..897573	-	158	189499797	-	Cphamn1_0835	-	hypothetical protein
798	 41.67	-1	897991..898170	+	59	189499798	-	Cphamn1_0836	-	hypothetical protein
799	 49.22	0	898167..900803	+	878	189499799	-	Cphamn1_0837	-	DNA mismatch repair protein MutS
800	 51.02	0	900886..902304	+	472	189499800	-	Cphamn1_0838	-	Radical SAM domain protein
801	 46.19	0	902421..904178	-	585	189499801	-	Cphamn1_0839	-	ABC transporter-related protein
802	 43.78	-1	904316..904717	+	133	189499802	-	Cphamn1_0840	-	transcriptional regulator, MerR family
803	 49.64	0	904812..905915	-	367	189499803	-	Cphamn1_0841	-	bacteriochlorophyll A protein
804	 50.37	0	906211..907824	+	537	189499804	-	Cphamn1_0842	-	apolipoprotein N-acyltransferase
805	 47.95	0	907821..909017	-	398	189499805	-	Cphamn1_0843	-	sigma54 specific transcriptional regulator, Fis family
806	 49.20	0	909062..909622	-	186	189499806	-	Cphamn1_0844	-	Sporulation domain protein
807	 50.06	0	909724..910584	+	286	189499807	-	Cphamn1_0845	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
808	 50.46	0	911210..912073	-	287	189499808	-	Cphamn1_0846	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
809	 49.85	0	912089..913390	-	433	189499809	-	Cphamn1_0847	-	Xanthine/uracil/vitamin C permease
810	 46.87	0	914179..914769	+	196	189499810	-	Cphamn1_0848	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
811	 51.11	0	914987..916432	-	481	189499811	-	Cphamn1_0849	-	prolyl-tRNA synthetase
812	 48.18	0	916486..917226	-	246	189499812	-	Cphamn1_0850	-	hypothetical protein
813	 51.12	0	917445..918338	+	297	189499813	-	Cphamn1_0851	-	protein-(glutamine-N5) methyltransferase, release factor-specific
814	 48.35	0	918511..919569	+	352	189499814	-	Cphamn1_0852	-	heat-inducible transcription repressor HrcA
815	 48.50	0	919623..920189	+	188	189499815	-	Cphamn1_0853	-	GrpE protein
816	 50.93	0	920237..921424	+	395	189499816	-	Cphamn1_0854	-	chaperone protein DnaJ
817	 45.89	0	921996..922616	-	206	189499817	-	Cphamn1_0855	-	Proto-chlorophyllide reductase 57 kD subunit
818	 48.37	0	922739..922891	-	50	189499818	-	Cphamn1_0856	-	hypothetical protein
819	 48.86	0	923073..924077	-	334	189499819	-	Cphamn1_0857	-	glyceraldehyde-3-phosphate dehydrogenase, type I
820	 49.69	0	924155..925585	-	476	189499820	-	Cphamn1_0858	-	Mur ligase middle domain protein
821	 51.78	0	925632..926948	-	438	189499821	-	Cphamn1_0859	-	major facilitator superfamily MFS_1
822	 50.80	0	927045..927731	-	228	189499822	-	Cphamn1_0860	-	ABC transporter-related protein
823	 51.04	0	927941..929194	-	417	189499823	-	Cphamn1_0861	-	gamma-glutamyl phosphate reductase
824	 43.48	-1	929222..929428	-	68	189499824	-	Cphamn1_0862	-	hypothetical protein
48.93	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.