IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides BS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.93 STD DEV: 4.12
Chlorobium phaeobacteroides BS1, complete genome - 1..2736403
2469 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
669	 43.89	-1	734064..734783	+	239	189499669	-	Cphamn1_0700	-	ABC transporter-related protein
670	 42.77	-1	734796..735929	+	377	189499670	-	Cphamn1_0701	-	Extracellular ligand-binding receptor
671	 53.53	+1	736205..737536	-	443	189499671	-	Cphamn1_0702	-	hypothetical protein
672	 31.58	-2	737727..738182	+	151	189499672	-	Cphamn1_0703	-	hypothetical protein
673	 53.36	+1	738298..739695	+	465	189499673	-	Cphamn1_0704	-	hypothetical protein
674	 49.83	0	742704..743873	+	389	189499674	-	Cphamn1_0706	-	protein of unknown function DUF1016
675	 51.18	0	743860..747159	+	1099	189499675	-	Cphamn1_0707	-	type III restriction protein res subunit
676	 49.32	0	747156..748487	+	443	189499676	-	Cphamn1_0708	-	conserved hypothetical cytosolic protein
677	 47.79	0	748484..750628	+	714	189499677	-	Cphamn1_0709	-	protein of unknown function DUF87
678	 35.14	-2	752803..752913	+	36	189499678	-	Cphamn1_0711	-	hypothetical protein
679	 47.21	0	753005..754063	+	352	189499679	-	Cphamn1_0712	-	transposase IS4 family protein
680	 47.03	0	754604..755326	+	240	189499680	-	Cphamn1_0713	-	Domain of unknown function DUF1814
681	 50.06	0	755866..756726	+	286	189499681	-	Cphamn1_0714	-	hypothetical protein
682	 50.84	0	756723..757556	+	277	189499682	-	Cphamn1_0715	-	Domain of unknown function DUF1814
683	 52.30	0	757577..759073	-	498	189499683	-	Cphamn1_0716	-	filamentation induced by cAMP protein Fic
684	 46.00	0	759880..762264	+	794	189499684	-	Cphamn1_0717	-	type III restriction protein res subunit
685	 49.75	0	762443..763636	+	397	189499685	-	Cphamn1_0718	-	hypothetical protein
686	 43.41	-1	764007..764135	-	42	189499686	-	Cphamn1_0719	-	hypothetical protein
687	 48.89	0	764197..764466	+	89	189499687	-	Cphamn1_0720	-	transcriptional regulator, CopG family
688	 47.02	0	764447..764731	+	94	189499688	-	Cphamn1_0721	-	addiction module toxin, RelE/StbE family
689	 56.51	+1	764750..766246	-	498	189499689	-	Cphamn1_0722	-	transposase, IS5 family, putative
690	 49.14	0	766493..766840	-	115	189499690	-	Cphamn1_0723	-	transcriptional regulator, XRE family
691	 43.52	-1	766837..767160	-	107	189499691	-	Cphamn1_0724	-	protein of unknown function DUF891
692	 46.01	0	769930..770142	+	70	189499692	-	Cphamn1_0727	-	hypothetical protein
693	 46.12	0	770459..770857	-	132	189499693	-	Cphamn1_0728	-	PilT protein domain protein
694	 47.44	0	770854..771087	-	77	189499694	-	Cphamn1_0729	-	SpoVT/AbrB domain protein
695	 48.95	0	771897..772607	+	236	189499695	-	Cphamn1_0730	-	Isoprenylcysteine carboxyl methyltransferase
696	 40.07	-2	772765..773046	+	93	189499696	-	Cphamn1_0731	-	hypothetical protein
697	 51.64	0	773275..773487	+	70	189499697	-	Cphamn1_0732	-	hypothetical protein
698	 46.91	0	773484..773807	+	107	189499698	-	Cphamn1_0733	-	transcriptional modulator of MazE/toxin, MazF
699	 56.71	+1	773844..775058	-	404	189499699	-	Cphamn1_0734	-	hypothetical protein
700	 58.15	+2	775055..778423	-	1122	189499700	-	Cphamn1_0735	-	hypothetical protein
701	 59.91	+2	778416..779051	-	211	189499701	-	Cphamn1_0736	-	hypothetical protein
702	 58.45	+2	779048..780496	-	482	189499702	-	Cphamn1_0737	-	hypothetical protein
703	 48.43	0	780580..781248	-	222	189499703	-	Cphamn1_0738	-	putative lipoprotein
704	 45.36	0	783429..783611	+	60	189499704	-	Cphamn1_0740	-	hypothetical protein
705	 50.68	0	783820..784113	+	97	189499705	-	Cphamn1_0741	-	protein of unknown function DUF1568
706	 49.46	0	784311..784769	+	152	189499706	-	Cphamn1_0742	-	transcriptional regulator, XRE family
707	 51.09	0	784760..785356	+	198	189499707	-	Cphamn1_0743	-	mobile mystery protein B
708	 47.30	0	785683..788481	+	932	189499708	-	Cphamn1_0744	-	conserved hypothetical protein, putative DNA helicase
709	 54.16	+1	788601..791159	-	852	189499709	-	Cphamn1_0745	-	hypothetical protein
710	 55.18	+1	791152..792204	-	350	189499710	-	Cphamn1_0746	-	hypothetical protein
711	 48.90	0	792252..793844	-	530	189499711	-	Cphamn1_0747	-	Site-specific DNA-methyltransferase (adenine-specific)
712	 53.18	+1	793841..794485	-	214	189499712	-	Cphamn1_0748	-	type III restriction system methylase
713	 58.54	+2	794653..797631	-	992	189499713	-	Cphamn1_0749	-	type III restriction protein res subunit
714	 54.16	+1	797634..798944	-	436	189499714	-	Cphamn1_0750	-	putative type I restriction-modification system
715	 61.28	+2	798941..801001	-	686	189499715	-	Cphamn1_0751	-	N-6 DNA methylase
716	 47.39	0	801747..802358	+	203	189499716	-	Cphamn1_0752	-	hypothetical protein
717	 50.60	0	803092..804435	-	447	189499717	-	Cphamn1_0754	-	hypothetical protein
718	 47.17	0	804469..805263	-	264	189499718	-	Cphamn1_0755	-	Methyltransferase type 12
719	 47.84	0	805638..806216	+	192	189499719	-	Cphamn1_0756	-	hypothetical protein
720	 48.17	0	806293..806919	+	208	189499720	-	Cphamn1_0757	-	hypothetical protein
721	 49.88	0	807159..808004	+	281	189499721	-	Cphamn1_0758	-	hypothetical protein
722	 47.39	0	808202..809005	+	267	189499722	-	Cphamn1_0759	-	Methyltransferase type 11
723	 52.89	0	809012..810484	+	490	189499723	-	Cphamn1_0760	-	putative anti-sigma regulatory factor, serine/threonine protein kinase
724	 50.31	0	810587..811222	+	211	189499724	-	Cphamn1_0761	-	hypothetical protein
725	 49.36	0	811308..811619	+	103	189499725	-	Cphamn1_0762	-	hypothetical protein
726	 53.31	+1	811774..812724	+	316	189499726	-	Cphamn1_0763	-	short-chain dehydrogenase/reductase SDR
727	 51.67	0	812760..814946	+	728	189499727	-	Cphamn1_0764	-	helicase, RecD/TraA family
728	 48.99	0	815203..817590	+	795	189499728	-	Cphamn1_0765	-	ribonuclease R
729	 50.09	0	817794..818957	-	387	189499729	-	Cphamn1_0766	-	sodium/hydrogen exchanger
730	 49.63	0	818978..820333	-	451	189499730	-	Cphamn1_0767	-	deoxyribodipyrimidine photolyase
731	 51.68	0	820347..821060	-	237	189499731	-	Cphamn1_0768	-	glutamine amidotransferase class-I
732	 53.43	+1	823092..824489	-	465	189499732	-	Cphamn1_0770	-	hypothetical protein
733	 44.86	0	825243..825806	+	187	189499733	-	Cphamn1_0771	-	hypothetical protein
734	 52.50	0	825822..826661	-	279	189499734	-	Cphamn1_0772	-	Integrase catalytic region
735	 47.77	0	826685..826975	-	96	189499735	-	Cphamn1_0773	-	transposase IS3/IS911 family protein
736	 45.18	0	826977..827744	+	255	189499736	-	Cphamn1_0774	-	hypothetical protein
737	 48.80	0	827762..828136	-	124	189499737	-	Cphamn1_0775	-	Rhodanese domain protein
738	 52.78	0	828873..830075	-	400	189499738	-	Cphamn1_0776	-	tryptophan synthase, beta subunit
739	 48.42	0	830267..832990	+	907	189499739	-	Cphamn1_0777	-	hypothetical protein
740	 49.94	0	833045..833917	-	290	189499740	-	Cphamn1_0778	-	alpha/beta hydrolase fold
741	 47.62	0	834063..834461	+	132	189499741	-	Cphamn1_0779	-	transcriptional regulator, BadM/Rrf2 family
742	 49.81	0	834631..837477	+	948	189499742	-	Cphamn1_0780	-	excinuclease ABC, A subunit
743	 43.43	-1	837593..837889	-	98	189499743	-	Cphamn1_0781	-	hypothetical protein
744	 45.14	0	838121..838408	+	95	189499744	-	Cphamn1_0782	-	chaperonin Cpn10
745	 50.27	0	838459..840111	+	550	189499745	-	Cphamn1_0783	-	chaperonin GroEL
746	 50.37	0	840276..840956	+	226	189499746	-	Cphamn1_0784	-	exsB protein
747	 46.09	0	841034..841723	+	229	189499747	-	Cphamn1_0785	-	Abortive infection protein
748	 51.30	0	841742..842548	+	268	189499748	-	Cphamn1_0786	-	tryptophan synthase, alpha subunit
749	 51.22	0	842558..843619	+	353	189499749	-	Cphamn1_0787	-	glycosyl transferase family 2
750	 51.48	0	843805..844851	-	348	189499750	-	Cphamn1_0788	-	NAD-dependent epimerase/dehydratase
751	 49.20	0	844907..845467	-	186	189499751	-	Cphamn1_0789	-	cyclase/dehydrase
752	 48.69	0	845460..846110	-	216	189499752	-	Cphamn1_0790	-	cyclase/dehydrase
753	 46.97	0	846121..846648	-	175	189499753	-	Cphamn1_0791	-	cyclase/dehydrase
754	 49.28	0	846790..848238	-	482	189499754	-	Cphamn1_0792	-	alpha amylase catalytic region
755	 53.87	+1	848427..848723	+	98	189499755	-	Cphamn1_0793	-	transcriptional coactivator/pterin dehydratase
756	 48.91	0	849177..851384	+	735	189499756	-	Cphamn1_0794	-	UvrD/REP helicase
757	 49.90	0	851554..852591	+	345	189499757	-	Cphamn1_0795	-	hypothetical protein
758	 46.97	0	852619..853212	+	197	189499758	-	Cphamn1_0796	-	leucyl/phenylalanyl-tRNA/protein transferase
759	 46.16	0	853310..854611	+	433	189499759	-	Cphamn1_0797	-	arsenite-activated ATPase ArsA
760	 46.60	0	854735..855616	+	293	189499760	-	Cphamn1_0798	-	enoyl-(acyl-carrier protein) reductase (NADH)
761	 51.49	0	855829..858048	+	739	189499761	-	Cphamn1_0799	-	isocitrate dehydrogenase, NADP-dependent
762	 51.75	0	858319..861804	+	1161	189499762	-	Cphamn1_0800	-	ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
763	 46.59	0	862260..863096	+	278	189499763	-	Cphamn1_0801	-	hypothetical protein
764	 50.11	0	863638..865413	+	591	189499764	-	Cphamn1_0802	-	hypothetical protein
765	 52.67	0	865377..867419	+	680	189499765	-	Cphamn1_0803	-	hypothetical protein
766	 47.88	0	867420..868244	+	274	189499766	-	Cphamn1_0804	-	hypothetical protein
767	 48.89	0	868698..868967	+	89	189499767	-	Cphamn1_0805	-	hypothetical protein
768	 49.81	0	868985..869245	+	86	189499768	-	Cphamn1_0806	-	plasmid stabilization system
48.93	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.