IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides BS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.93 STD DEV: 4.12
Chlorobium phaeobacteroides BS1, complete genome - 1..2736403
2469 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
620	 48.17	0	679882..680784	+	300	189499620	-	Cphamn1_0651	-	pentapeptide repeat protein
621	 49.76	0	681014..682249	+	411	189499621	-	Cphamn1_0652	-	hypothetical protein
622	 50.81	0	682246..683046	+	266	189499622	-	Cphamn1_0653	-	cytochrome c assembly protein
623	 44.83	0	683120..683380	-	86	189499623	-	Cphamn1_0654	-	hypothetical protein
624	 49.59	0	683562..685868	+	768	189499624	-	Cphamn1_0655	-	TonB-dependent receptor
625	 50.00	0	686052..686543	-	163	189499625	-	Cphamn1_0656	-	protein of unknown function DUF985
626	 51.81	0	686530..687054	-	174	189499626	-	Cphamn1_0657	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
627	 46.91	0	687175..688596	+	473	189499627	-	Cphamn1_0658	-	oxygen-independent coproporphyrinogen III oxidase
628	 45.10	0	688809..689522	+	237	189499628	-	Cphamn1_0659	-	phosphoribulokinase/uridine kinase
629	 50.00	0	689503..690072	+	189	189499629	-	Cphamn1_0660	-	nitroreductase
630	 49.31	0	690085..692037	-	650	189499630	-	Cphamn1_0661	-	ABC transporter-related protein
631	 47.31	0	692681..693517	+	278	189499631	-	Cphamn1_0662	-	hypothetical protein
632	 48.76	0	693528..694940	+	470	189499632	-	Cphamn1_0663	-	hypothetical protein
633	 56.51	+1	695049..696545	+	498	189499633	-	Cphamn1_0664	-	transposase, IS5 family, putative
634	 48.42	0	696520..697089	+	189	189499634	-	Cphamn1_0665	-	hypothetical protein
635	 47.56	0	697091..698137	+	348	189499635	-	Cphamn1_0666	-	Glutathione synthase
636	 51.79	0	698198..699373	-	391	189499636	-	Cphamn1_0667	-	succinyl-CoA synthetase, beta subunit
637	 54.35	+1	699637..700107	+	156	189499637	-	Cphamn1_0668	-	CMP/dCMP deaminase zinc-binding
638	 47.05	0	700572..701621	-	349	189499638	-	Cphamn1_0669	-	hypothetical protein
639	 49.53	0	702036..703301	-	421	189499639	-	Cphamn1_0670	-	2-nitropropane dioxygenase NPD
640	 48.79	0	703602..704345	+	247	189499640	-	Cphamn1_0671	-	phosphoglycerate mutase 1 family
641	 49.92	0	704467..709071	+	1534	189499641	-	Cphamn1_0672	-	Glutamate synthase (ferredoxin)
642	 52.64	0	709115..710590	+	491	189499642	-	Cphamn1_0673	-	glutamate synthase, NADH/NADPH, small subunit
643	 48.15	0	710678..710947	+	89	189499643	-	Cphamn1_0674	-	hypothetical protein
644	 51.90	0	710986..712299	+	437	189499644	-	Cphamn1_0675	-	ATP-dependent Clp protease, ATP-binding subunit ClpX
645	 47.57	0	712599..713771	+	390	189499645	-	Cphamn1_0676	-	integrase family protein
646	 45.20	0	713752..714720	+	322	189499646	-	Cphamn1_0677	-	hypothetical protein
647	 52.94	0	714877..715131	-	84	189499647	-	Cphamn1_0678	-	hypothetical protein
648	 49.53	0	715157..716545	-	462	189499648	-	Cphamn1_0679	-	Radical SAM domain protein
649	 44.44	-1	717054..717404	+	116	189499649	-	Cphamn1_0680	-	DNA binding domain protein, excisionase family
650	 48.77	0	717495..718142	+	215	189499650	-	Cphamn1_0681	-	Cobyrinic acid ac-diamide synthase
651	 45.56	0	718139..718408	+	89	189499651	-	Cphamn1_0682	-	hypothetical protein
652	 45.98	0	718412..718846	+	144	189499652	-	Cphamn1_0683	-	hypothetical protein
653	 46.74	0	718843..719424	+	193	189499653	-	Cphamn1_0684	-	conjugal transfer protein precursor
654	 50.75	0	719578..721506	+	642	189499654	-	Cphamn1_0685	-	hypothetical protein
655	 48.75	0	721511..723781	+	756	189499655	-	Cphamn1_0686	-	TRAG family protein
656	 48.95	0	723778..724206	+	142	189499656	-	Cphamn1_0687	-	hypothetical protein
657	 55.70	+1	724335..725264	+	309	189499657	-	Cphamn1_0688	-	P-type conjugative transfer ATPase TrbB
658	 49.14	0	725321..726073	-	250	189499658	-	Cphamn1_0689	-	hypothetical protein
659	 45.45	0	726045..726836	-	263	189499659	-	Cphamn1_0690	-	hypothetical protein
660	 46.26	0	726967..727314	-	115	189499660	-	Cphamn1_0691	-	mobilizable transposon, xis protein
661	 43.72	-1	727395..727808	+	137	189499661	-	Cphamn1_0692	-	hypothetical protein
662	 44.44	-1	727789..728004	-	71	189499662	-	Cphamn1_0693	-	hypothetical protein
663	 42.34	-1	728604..729347	+	247	189499663	-	Cphamn1_0694	-	Serine/threonine protein phosphatase-like protein
664	 42.77	-1	729493..730170	+	225	189499664	-	Cphamn1_0695	-	hypothetical protein
665	 44.31	-1	730260..731243	+	327	189499665	-	Cphamn1_0696	-	CheD
666	 45.08	0	731444..732337	+	297	189499666	-	Cphamn1_0697	-	inner-membrane translocator
667	 44.25	-1	732361..733203	+	280	189499667	-	Cphamn1_0698	-	inner-membrane translocator
668	 44.83	0	733207..734067	+	286	189499668	-	Cphamn1_0699	-	ABC transporter-related protein
669	 43.89	-1	734064..734783	+	239	189499669	-	Cphamn1_0700	-	ABC transporter-related protein
670	 42.77	-1	734796..735929	+	377	189499670	-	Cphamn1_0701	-	Extracellular ligand-binding receptor
671	 53.53	+1	736205..737536	-	443	189499671	-	Cphamn1_0702	-	hypothetical protein
672	 31.58	-2	737727..738182	+	151	189499672	-	Cphamn1_0703	-	hypothetical protein
673	 53.36	+1	738298..739695	+	465	189499673	-	Cphamn1_0704	-	hypothetical protein
674	 49.83	0	742704..743873	+	389	189499674	-	Cphamn1_0706	-	protein of unknown function DUF1016
675	 51.18	0	743860..747159	+	1099	189499675	-	Cphamn1_0707	-	type III restriction protein res subunit
676	 49.32	0	747156..748487	+	443	189499676	-	Cphamn1_0708	-	conserved hypothetical cytosolic protein
677	 47.79	0	748484..750628	+	714	189499677	-	Cphamn1_0709	-	protein of unknown function DUF87
678	 35.14	-2	752803..752913	+	36	189499678	-	Cphamn1_0711	-	hypothetical protein
679	 47.21	0	753005..754063	+	352	189499679	-	Cphamn1_0712	-	transposase IS4 family protein
680	 47.03	0	754604..755326	+	240	189499680	-	Cphamn1_0713	-	Domain of unknown function DUF1814
681	 50.06	0	755866..756726	+	286	189499681	-	Cphamn1_0714	-	hypothetical protein
682	 50.84	0	756723..757556	+	277	189499682	-	Cphamn1_0715	-	Domain of unknown function DUF1814
683	 52.30	0	757577..759073	-	498	189499683	-	Cphamn1_0716	-	filamentation induced by cAMP protein Fic
684	 46.00	0	759880..762264	+	794	189499684	-	Cphamn1_0717	-	type III restriction protein res subunit
685	 49.75	0	762443..763636	+	397	189499685	-	Cphamn1_0718	-	hypothetical protein
686	 43.41	-1	764007..764135	-	42	189499686	-	Cphamn1_0719	-	hypothetical protein
687	 48.89	0	764197..764466	+	89	189499687	-	Cphamn1_0720	-	transcriptional regulator, CopG family
688	 47.02	0	764447..764731	+	94	189499688	-	Cphamn1_0721	-	addiction module toxin, RelE/StbE family
689	 56.51	+1	764750..766246	-	498	189499689	-	Cphamn1_0722	-	transposase, IS5 family, putative
690	 49.14	0	766493..766840	-	115	189499690	-	Cphamn1_0723	-	transcriptional regulator, XRE family
691	 43.52	-1	766837..767160	-	107	189499691	-	Cphamn1_0724	-	protein of unknown function DUF891
692	 46.01	0	769930..770142	+	70	189499692	-	Cphamn1_0727	-	hypothetical protein
693	 46.12	0	770459..770857	-	132	189499693	-	Cphamn1_0728	-	PilT protein domain protein
694	 47.44	0	770854..771087	-	77	189499694	-	Cphamn1_0729	-	SpoVT/AbrB domain protein
695	 48.95	0	771897..772607	+	236	189499695	-	Cphamn1_0730	-	Isoprenylcysteine carboxyl methyltransferase
696	 40.07	-2	772765..773046	+	93	189499696	-	Cphamn1_0731	-	hypothetical protein
697	 51.64	0	773275..773487	+	70	189499697	-	Cphamn1_0732	-	hypothetical protein
698	 46.91	0	773484..773807	+	107	189499698	-	Cphamn1_0733	-	transcriptional modulator of MazE/toxin, MazF
699	 56.71	+1	773844..775058	-	404	189499699	-	Cphamn1_0734	-	hypothetical protein
700	 58.15	+2	775055..778423	-	1122	189499700	-	Cphamn1_0735	-	hypothetical protein
701	 59.91	+2	778416..779051	-	211	189499701	-	Cphamn1_0736	-	hypothetical protein
702	 58.45	+2	779048..780496	-	482	189499702	-	Cphamn1_0737	-	hypothetical protein
703	 48.43	0	780580..781248	-	222	189499703	-	Cphamn1_0738	-	putative lipoprotein
704	 45.36	0	783429..783611	+	60	189499704	-	Cphamn1_0740	-	hypothetical protein
705	 50.68	0	783820..784113	+	97	189499705	-	Cphamn1_0741	-	protein of unknown function DUF1568
706	 49.46	0	784311..784769	+	152	189499706	-	Cphamn1_0742	-	transcriptional regulator, XRE family
707	 51.09	0	784760..785356	+	198	189499707	-	Cphamn1_0743	-	mobile mystery protein B
708	 47.30	0	785683..788481	+	932	189499708	-	Cphamn1_0744	-	conserved hypothetical protein, putative DNA helicase
709	 54.16	+1	788601..791159	-	852	189499709	-	Cphamn1_0745	-	hypothetical protein
710	 55.18	+1	791152..792204	-	350	189499710	-	Cphamn1_0746	-	hypothetical protein
711	 48.90	0	792252..793844	-	530	189499711	-	Cphamn1_0747	-	Site-specific DNA-methyltransferase (adenine-specific)
712	 53.18	+1	793841..794485	-	214	189499712	-	Cphamn1_0748	-	type III restriction system methylase
713	 58.54	+2	794653..797631	-	992	189499713	-	Cphamn1_0749	-	type III restriction protein res subunit
714	 54.16	+1	797634..798944	-	436	189499714	-	Cphamn1_0750	-	putative type I restriction-modification system
715	 61.28	+2	798941..801001	-	686	189499715	-	Cphamn1_0751	-	N-6 DNA methylase
716	 47.39	0	801747..802358	+	203	189499716	-	Cphamn1_0752	-	hypothetical protein
717	 50.60	0	803092..804435	-	447	189499717	-	Cphamn1_0754	-	hypothetical protein
718	 47.17	0	804469..805263	-	264	189499718	-	Cphamn1_0755	-	Methyltransferase type 12
719	 47.84	0	805638..806216	+	192	189499719	-	Cphamn1_0756	-	hypothetical protein
48.93	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.