IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides BS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.93 STD DEV: 4.12
Chlorobium phaeobacteroides BS1, complete genome - 1..2736403
2469 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
503	 44.57	-1	557752..558294	+	180	189499503	-	Cphamn1_0529	-	isochorismatase hydrolase
504	 48.99	0	558637..559677	-	346	189499504	-	Cphamn1_0530	-	tetraacyldisaccharide 4'-kinase
505	 48.06	0	559670..560287	-	205	189499505	-	Cphamn1_0531	-	protein of unknown function DUF374
506	 51.83	0	560511..561791	+	426	189499506	-	Cphamn1_0532	-	phosphoribosylamine/glycine ligase
507	 48.15	0	561808..562239	+	143	189499507	-	Cphamn1_0533	-	hypothetical protein
508	 49.93	0	562323..563810	+	495	189499508	-	Cphamn1_0534	-	Carbamoyl-phosphate synthase L chain ATP-binding
509	 50.45	0	563812..564588	+	258	189499509	-	Cphamn1_0535	-	Indole-3-glycerol-phosphate synthase
510	 49.55	0	564569..565234	-	221	189499510	-	Cphamn1_0536	-	Ribulose-phosphate 3-epimerase
511	 46.70	0	565307..567475	-	722	189499511	-	Cphamn1_0537	-	surface antigen (D15)
512	 46.05	0	567524..567751	-	75	189499512	-	Cphamn1_0538	-	hypothetical protein
513	 46.28	0	567776..568702	-	308	189499513	-	Cphamn1_0539	-	Peptidase M23
514	 49.06	0	568792..571602	-	936	189499514	-	Cphamn1_0540	-	DNA polymerase I
515	 47.38	0	571586..572425	-	279	189499515	-	Cphamn1_0541	-	Prephenate dehydratase
516	 48.47	0	572554..573306	+	250	189499516	-	Cphamn1_0542	-	protein of unknown function DUF28
517	 50.09	0	573331..573891	+	186	189499517	-	Cphamn1_0543	-	crossover junction endodeoxyribonuclease RuvC
518	 46.35	0	573917..574477	+	186	189499518	-	Cphamn1_0544	-	CDP-alcohol phosphatidyltransferase
519	 48.29	0	574480..575883	-	467	189499519	-	Cphamn1_0545	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
520	 52.18	0	577188..577988	-	266	189499520	-	Cphamn1_0546	-	Inositol-phosphate phosphatase
521	 45.91	0	578389..578865	+	158	189499521	-	Cphamn1_0547	-	TspO and MBR like protein
522	 51.02	0	579220..579756	-	178	189499522	-	Cphamn1_0549	-	hypothetical protein
523	 51.46	0	579880..581871	-	663	189499523	-	Cphamn1_0550	-	acetate/CoA ligase
524	 49.90	0	582157..584577	-	806	189499524	-	Cphamn1_0551	-	leucyl-tRNA synthetase
525	 49.75	0	584935..587139	-	734	189499525	-	Cphamn1_0552	-	Polyribonucleotide nucleotidyltransferase
526	 50.40	0	587277..588143	-	288	189499526	-	Cphamn1_0553	-	pantoate/beta-alanine ligase
527	 51.07	0	588191..588940	-	249	189499527	-	Cphamn1_0554	-	Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
528	 48.25	0	589220..590446	+	408	189499528	-	Cphamn1_0555	-	protein of unknown function DUF81
529	 44.94	0	590604..590870	+	88	189499529	-	Cphamn1_0556	-	conserved hypothetical cytosolic protein
530	 48.52	0	590965..591234	+	89	189499530	-	Cphamn1_0557	-	transcriptional regulator, XRE family
531	 48.78	0	591829..592851	+	340	189499531	-	Cphamn1_0559	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
532	 51.03	0	592913..594703	+	596	189499532	-	Cphamn1_0560	-	signal peptide peptidase SppA, 67K type
533	 38.52	-2	594810..594944	-	44	189499533	-	Cphamn1_0561	-	hypothetical protein
534	 50.16	0	594946..595563	+	205	189499534	-	Cphamn1_0562	-	hypothetical protein
535	 48.77	0	595577..596269	+	230	189499535	-	Cphamn1_0563	-	hypothetical protein
536	 47.46	0	596488..596664	-	58	189499536	-	Cphamn1_0564	-	hypothetical protein
537	 51.93	0	596667..597860	-	397	189499537	-	Cphamn1_0565	-	arsenical-resistance protein
538	 51.61	0	598004..598189	-	61	189499538	-	Cphamn1_0566	-	protein-tyrosine-phosphatase
539	 53.54	+1	598216..598596	-	126	189499539	-	Cphamn1_0567	-	transcriptional regulator, ArsR family
540	 52.65	0	598811..599131	+	106	189499540	-	Cphamn1_0568	-	hypothetical protein
541	 49.83	0	599202..599492	+	96	189499541	-	Cphamn1_0569	-	addiction module killer protein
542	 50.15	0	599502..599828	+	108	189499542	-	Cphamn1_0570	-	putative transcriptional regulator
543	 51.58	0	600029..600313	+	94	189499543	-	Cphamn1_0571	-	transcriptional regulator, XRE family
544	 52.54	0	600423..601958	+	511	189499544	-	Cphamn1_0572	-	transposase IS4 family protein
545	 48.37	0	602203..602508	-	101	189499545	-	Cphamn1_0573	-	putative transcriptional regulator
546	 45.91	0	602987..603145	+	52	189499546	-	Cphamn1_0575	-	hypothetical protein
547	 51.75	0	604880..607648	-	922	189499547	-	Cphamn1_0577	-	Phosphoenolpyruvate carboxylase
548	 46.75	0	607878..608630	+	250	189499548	-	Cphamn1_0578	-	photosystem P840 reaction center cytochrome c-551
549	 45.10	0	608728..609084	-	118	189499549	-	Cphamn1_0579	-	7-cyano-7-deazaguanine reductase
550	 47.44	0	609252..609953	+	233	189499550	-	Cphamn1_0580	-	Methyltransferase type 12
551	 47.89	0	609946..610797	+	283	189499551	-	Cphamn1_0581	-	hypothetical protein
552	 45.22	0	610806..611798	+	330	189499552	-	Cphamn1_0582	-	integrase family protein
553	 43.33	-1	611870..612199	+	109	189499553	-	Cphamn1_0583	-	sigma 54 modulation protein/ribosomal protein S30EA
554	 44.90	0	612270..613289	+	339	189499554	-	Cphamn1_0584	-	HPr kinase
555	 48.60	0	613282..615168	+	628	189499555	-	Cphamn1_0585	-	extracellular solute-binding protein family 5
556	 48.34	0	615487..616452	+	321	189499556	-	Cphamn1_0586	-	binding-protein-dependent transport systems inner membrane component
557	 52.21	0	616500..617516	+	338	189499557	-	Cphamn1_0587	-	Holliday junction DNA helicase RuvB
558	 47.14	0	617790..619505	+	571	189499558	-	Cphamn1_0588	-	Tetratricopeptide TPR_2 repeat protein
559	 50.07	0	619844..623392	-	1182	189499559	-	Cphamn1_0589	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
560	 50.27	0	623679..624422	+	247	189499560	-	Cphamn1_0590	-	RNA methyltransferase, TrmH family, group 3
561	 48.03	0	624563..624943	+	126	189499561	-	Cphamn1_0591	-	glycine cleavage system H protein
562	 52.43	0	624952..626286	+	444	189499562	-	Cphamn1_0592	-	Glycine dehydrogenase (decarboxylating)
563	 51.79	0	626279..627172	-	297	189499563	-	Cphamn1_0593	-	dihydrodipicolinate synthase
564	 49.59	0	627310..629019	-	569	189499564	-	Cphamn1_0594	-	DNA repair protein RecN
565	 49.26	0	629059..630069	-	336	189499565	-	Cphamn1_0595	-	hypothetical protein
566	 42.86	-1	630166..630375	-	69	189499566	-	Cphamn1_0596	-	twin-arginine translocation protein, TatA/E family subunit
567	 49.84	0	630501..631142	-	213	189499567	-	Cphamn1_0597	-	phosphatidylserine decarboxylase related protein
568	 47.66	0	631307..632311	+	334	189499568	-	Cphamn1_0598	-	tRNA(Ile)-lysidine synthetase
569	 48.81	0	632530..633576	-	348	189499569	-	Cphamn1_0599	-	hypothetical protein
570	 47.85	0	633584..634024	-	146	189499570	-	Cphamn1_0600	-	Ribonuclease H
571	 46.12	0	634119..634337	-	72	189499571	-	Cphamn1_0601	-	ribosomal protein L28
572	 51.86	0	634425..635417	-	330	189499572	-	Cphamn1_0602	-	bacteriochlorophyll/chlorophyll synthetase
573	 52.22	0	635498..636535	-	345	189499573	-	Cphamn1_0603	-	anthranilate phosphoribosyltransferase
574	 50.52	0	636784..637848	+	354	189499574	-	Cphamn1_0604	-	peptidase M24
575	 47.49	0	637981..638319	+	112	189499575	-	Cphamn1_0605	-	CutA1 divalent ion tolerance protein
576	 49.10	0	638302..639474	-	390	189499576	-	Cphamn1_0606	-	DNA-directed DNA polymerase
577	 48.14	0	639580..640491	-	303	189499577	-	Cphamn1_0607	-	branched-chain amino acid aminotransferase
578	 49.17	0	640519..641724	-	401	189499578	-	Cphamn1_0608	-	phosphofructokinase
579	 50.04	0	642139..643407	+	422	189499579	-	Cphamn1_0609	-	protein of unknown function DUF214
580	 55.42	+1	643704..644183	-	159	189499580	-	Cphamn1_0610	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
581	 52.30	0	644318..645445	+	375	189499581	-	Cphamn1_0611	-	hypothetical protein
582	 49.73	0	645737..646108	+	123	189499582	-	Cphamn1_0612	-	protein of unknown function DUF805
583	 43.39	-1	646226..646732	+	168	189499583	-	Cphamn1_0613	-	Protein of unknown function DUF1810
584	 57.25	+2	646659..647603	-	314	189499584	-	Cphamn1_0614	-	dihydroorotate dehydrogenase family protein
585	 49.48	0	647719..649830	-	703	189499585	-	Cphamn1_0615	-	alpha-glucan phosphorylase
586	 48.66	0	649983..650843	+	286	189499586	-	Cphamn1_0616	-	metallophosphoesterase
587	 49.60	0	650925..651422	-	165	189499587	-	Cphamn1_0617	-	Ferritin Dps family protein
588	 45.38	0	652069..652317	-	82	189499588	-	Cphamn1_0619	-	hypothetical protein
589	 52.31	0	652663..653637	+	324	189499589	-	Cphamn1_0620	-	hypothetical protein
590	 50.19	0	653661..653927	+	88	189499590	-	Cphamn1_0621	-	FeoA family protein
591	 50.44	0	653924..654151	+	75	189499591	-	Cphamn1_0622	-	FeoA family protein
592	 50.68	0	654151..656502	+	783	189499592	-	Cphamn1_0623	-	ferrous iron transport protein B
593	 45.18	0	656581..656808	+	75	189499593	-	Cphamn1_0624	-	hypothetical protein
594	 47.53	0	656974..657459	-	161	189499594	-	Cphamn1_0625	-	hypothetical protein
595	 49.16	0	657590..658006	+	138	189499595	-	Cphamn1_0626	-	Rieske (2Fe-2S) domain protein
596	 52.41	0	658016..658471	+	151	189499596	-	Cphamn1_0627	-	hypothetical protein
597	 49.06	0	658456..660312	-	618	189499597	-	Cphamn1_0628	-	Carbamoyl-phosphate synthetase large chain domain protein
598	 48.34	0	660405..661817	+	470	189499598	-	Cphamn1_0629	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
599	 51.93	0	662118..663440	+	440	189499599	-	Cphamn1_0630	-	Glycine hydroxymethyltransferase
600	 47.75	0	663574..665466	-	630	189499600	-	Cphamn1_0631	-	DNA primase
601	 43.01	-1	665872..665964	+	30	189499601	-	Cphamn1_0632	-	hypothetical protein
602	 50.47	0	665977..666723	+	248	189499602	-	Cphamn1_0633	-	MotA/TolQ/ExbB proton channel
48.93	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.