IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides BS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.93 STD DEV: 4.12
Chlorobium phaeobacteroides BS1, complete genome - 1..2736403
2469 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
445	 52.32	0	492429..492881	+	150	189499445	-	Cphamn1_0470	-	protein of unknown function DUF1499
446	 50.00	0	493112..493699	+	195	189499446	-	Cphamn1_0471	-	NADH dehydrogenase (ubiquinone) 24 kDa subunit
447	 50.42	0	493696..495480	+	594	189499447	-	Cphamn1_0472	-	NADH dehydrogenase (quinone)
448	 53.29	+1	495537..498527	+	996	189499448	-	Cphamn1_0473	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
449	 48.68	0	498548..499153	+	201	189499449	-	Cphamn1_0474	-	imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
450	 47.89	0	499176..499958	+	260	189499450	-	Cphamn1_0475	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
451	 46.86	0	500012..500617	+	201	189499451	-	Cphamn1_0476	-	segregation and condensation protein B
452	 50.33	0	500598..501362	+	254	189499452	-	Cphamn1_0477	-	pseudouridine synthase
453	 53.12	+1	501397..503367	+	656	189499453	-	Cphamn1_0478	-	hypothetical protein
454	 51.46	0	503502..503981	+	159	189499454	-	Cphamn1_0479	-	Exonuclease RNase T and DNA polymerase III
455	 55.00	+1	503998..504357	+	119	189499455	-	Cphamn1_0480	-	Domain of unknown function DUF1801
456	 51.14	0	504396..504833	-	145	189499456	-	Cphamn1_0481	-	hypothetical protein
457	 48.48	0	504909..505172	-	87	189499457	-	Cphamn1_0482	-	hypothetical protein
458	 53.12	+1	505601..506257	+	218	189499458	-	Cphamn1_0484	-	HAD-superfamily hydrolase, subfamily IA, variant 1
459	 53.48	+1	506931..507491	+	186	189499459	-	Cphamn1_0485	-	cell wall hydrolase SleB
460	 40.52	-2	507580..507732	+	50	189499460	-	Cphamn1_0486	-	hypothetical protein
461	 51.41	0	507775..508731	-	318	189499461	-	Cphamn1_0487	-	Sua5/YciO/YrdC/YwlC family protein
462	 48.42	0	508777..509439	-	220	189499462	-	Cphamn1_0488	-	phosphatidate cytidylyltransferase
463	 47.22	0	509930..511513	+	527	189499463	-	Cphamn1_0489	-	Ppx/GppA phosphatase
464	 49.95	0	511503..513326	+	607	189499464	-	Cphamn1_0490	-	para-aminobenzoate synthase, subunit I
465	 44.72	-1	513323..513445	+	40	189499465	-	Cphamn1_0491	-	hypothetical protein
466	 48.32	0	513483..513929	+	148	189499466	-	Cphamn1_0492	-	hypothetical protein
467	 50.23	0	514092..514754	-	220	189499467	-	Cphamn1_0493	-	endonuclease III
468	 56.51	+1	514729..516225	-	498	189499468	-	Cphamn1_0494	-	transposase, IS5 family, putative
469	 48.99	0	516419..517114	-	231	189499469	-	Cphamn1_0495	-	metallophosphoesterase
470	 45.56	0	517128..517634	-	168	189499470	-	Cphamn1_0496	-	NusB antitermination factor
471	 45.31	0	517653..518345	-	230	189499471	-	Cphamn1_0497	-	Haloacid dehalogenase domain protein hydrolase
472	 45.84	0	518338..521895	-	1185	189499472	-	Cphamn1_0498	-	chromosome segregation protein SMC
473	 51.29	0	522023..522913	-	296	189499473	-	Cphamn1_0499	-	dihydropteroate synthase
474	 51.80	0	522988..524016	-	342	189499474	-	Cphamn1_0500	-	peptidase M50
475	 48.12	0	524032..524484	-	150	189499475	-	Cphamn1_0501	-	cytochrome c, putative
476	 48.89	0	524531..525430	-	299	189499476	-	Cphamn1_0502	-	Methyltransferase type 12
477	 49.80	0	525798..526301	+	167	189499477	-	Cphamn1_0503	-	transcriptional regulator, BadM/Rrf2 family
478	 54.31	+1	526273..527130	+	285	189499478	-	Cphamn1_0504	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
479	 50.24	0	527333..527752	+	139	189499479	-	Cphamn1_0505	-	Tetratricopeptide TPR_2 repeat protein
480	 51.81	0	527756..529384	+	542	189499480	-	Cphamn1_0506	-	hybrid cluster protein
481	 55.65	+1	529446..530516	-	356	189499481	-	Cphamn1_0507	-	permease
482	 49.15	0	530536..530769	-	77	189499482	-	Cphamn1_0508	-	redox-active disulfide protein 2
483	 51.46	0	530825..531166	-	113	189499483	-	Cphamn1_0509	-	transcriptional regulator, ArsR family
484	 53.19	+1	531464..532279	+	271	189499484	-	Cphamn1_0510	-	zinc/iron permease
485	 47.92	0	532496..533338	+	280	189499485	-	Cphamn1_0511	-	hypothetical protein
486	 50.00	0	533662..535167	+	501	189499486	-	Cphamn1_0512	-	Alkaline phosphatase
487	 47.29	0	535220..536380	+	386	189499487	-	Cphamn1_0513	-	YibE/F family protein
488	 53.18	+1	536425..540264	-	1279	189499488	-	Cphamn1_0514	-	RTX toxins and related Ca2+-binding protein
489	 50.66	0	540734..542545	+	603	189499489	-	Cphamn1_0515	-	Radical SAM domain protein
490	 51.23	0	542574..543305	+	243	189499490	-	Cphamn1_0516	-	DNA alkylation repair enzyme
491	 44.44	-1	543311..543679	+	122	189499491	-	Cphamn1_0517	-	transcriptional regulator, ArsR family
492	 50.61	0	543757..544827	+	356	189499492	-	Cphamn1_0518	-	permease
493	 49.91	0	544952..546019	+	355	189499493	-	Cphamn1_0519	-	protein of unknown function DUF900 hydrolase family protein
494	 50.76	0	546054..546707	+	217	189499494	-	Cphamn1_0520	-	HAD-superfamily hydrolase, subfamily IA, variant 3
495	 50.40	0	546782..549628	-	948	189499495	-	Cphamn1_0521	-	excinuclease ABC, A subunit
496	 43.56	-1	549988..550212	+	74	189499496	-	Cphamn1_0522	-	hypothetical protein
497	 50.24	0	550265..553015	-	916	189499497	-	Cphamn1_0523	-	pyruvate, phosphate dikinase
498	 51.90	0	553333..554199	+	288	189499498	-	Cphamn1_0524	-	inner-membrane translocator
499	 48.71	0	554371..555027	-	218	189499499	-	Cphamn1_0525	-	ThiJ/PfpI domain protein
500	 51.91	0	555494..556279	+	261	189499500	-	Cphamn1_0526	-	hypothetical protein
501	 54.69	+1	556336..557028	+	230	189499501	-	Cphamn1_0527	-	Silent information regulator protein Sir2
502	 50.00	0	557132..557635	-	167	189499502	-	Cphamn1_0528	-	hypothetical protein
503	 44.57	-1	557752..558294	+	180	189499503	-	Cphamn1_0529	-	isochorismatase hydrolase
504	 48.99	0	558637..559677	-	346	189499504	-	Cphamn1_0530	-	tetraacyldisaccharide 4'-kinase
505	 48.06	0	559670..560287	-	205	189499505	-	Cphamn1_0531	-	protein of unknown function DUF374
506	 51.83	0	560511..561791	+	426	189499506	-	Cphamn1_0532	-	phosphoribosylamine/glycine ligase
507	 48.15	0	561808..562239	+	143	189499507	-	Cphamn1_0533	-	hypothetical protein
508	 49.93	0	562323..563810	+	495	189499508	-	Cphamn1_0534	-	Carbamoyl-phosphate synthase L chain ATP-binding
509	 50.45	0	563812..564588	+	258	189499509	-	Cphamn1_0535	-	Indole-3-glycerol-phosphate synthase
510	 49.55	0	564569..565234	-	221	189499510	-	Cphamn1_0536	-	Ribulose-phosphate 3-epimerase
511	 46.70	0	565307..567475	-	722	189499511	-	Cphamn1_0537	-	surface antigen (D15)
512	 46.05	0	567524..567751	-	75	189499512	-	Cphamn1_0538	-	hypothetical protein
513	 46.28	0	567776..568702	-	308	189499513	-	Cphamn1_0539	-	Peptidase M23
514	 49.06	0	568792..571602	-	936	189499514	-	Cphamn1_0540	-	DNA polymerase I
515	 47.38	0	571586..572425	-	279	189499515	-	Cphamn1_0541	-	Prephenate dehydratase
516	 48.47	0	572554..573306	+	250	189499516	-	Cphamn1_0542	-	protein of unknown function DUF28
517	 50.09	0	573331..573891	+	186	189499517	-	Cphamn1_0543	-	crossover junction endodeoxyribonuclease RuvC
518	 46.35	0	573917..574477	+	186	189499518	-	Cphamn1_0544	-	CDP-alcohol phosphatidyltransferase
519	 48.29	0	574480..575883	-	467	189499519	-	Cphamn1_0545	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
520	 52.18	0	577188..577988	-	266	189499520	-	Cphamn1_0546	-	Inositol-phosphate phosphatase
521	 45.91	0	578389..578865	+	158	189499521	-	Cphamn1_0547	-	TspO and MBR like protein
522	 51.02	0	579220..579756	-	178	189499522	-	Cphamn1_0549	-	hypothetical protein
523	 51.46	0	579880..581871	-	663	189499523	-	Cphamn1_0550	-	acetate/CoA ligase
524	 49.90	0	582157..584577	-	806	189499524	-	Cphamn1_0551	-	leucyl-tRNA synthetase
525	 49.75	0	584935..587139	-	734	189499525	-	Cphamn1_0552	-	Polyribonucleotide nucleotidyltransferase
526	 50.40	0	587277..588143	-	288	189499526	-	Cphamn1_0553	-	pantoate/beta-alanine ligase
527	 51.07	0	588191..588940	-	249	189499527	-	Cphamn1_0554	-	Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
528	 48.25	0	589220..590446	+	408	189499528	-	Cphamn1_0555	-	protein of unknown function DUF81
529	 44.94	0	590604..590870	+	88	189499529	-	Cphamn1_0556	-	conserved hypothetical cytosolic protein
530	 48.52	0	590965..591234	+	89	189499530	-	Cphamn1_0557	-	transcriptional regulator, XRE family
531	 48.78	0	591829..592851	+	340	189499531	-	Cphamn1_0559	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
532	 51.03	0	592913..594703	+	596	189499532	-	Cphamn1_0560	-	signal peptide peptidase SppA, 67K type
533	 38.52	-2	594810..594944	-	44	189499533	-	Cphamn1_0561	-	hypothetical protein
534	 50.16	0	594946..595563	+	205	189499534	-	Cphamn1_0562	-	hypothetical protein
535	 48.77	0	595577..596269	+	230	189499535	-	Cphamn1_0563	-	hypothetical protein
536	 47.46	0	596488..596664	-	58	189499536	-	Cphamn1_0564	-	hypothetical protein
537	 51.93	0	596667..597860	-	397	189499537	-	Cphamn1_0565	-	arsenical-resistance protein
538	 51.61	0	598004..598189	-	61	189499538	-	Cphamn1_0566	-	protein-tyrosine-phosphatase
539	 53.54	+1	598216..598596	-	126	189499539	-	Cphamn1_0567	-	transcriptional regulator, ArsR family
540	 52.65	0	598811..599131	+	106	189499540	-	Cphamn1_0568	-	hypothetical protein
541	 49.83	0	599202..599492	+	96	189499541	-	Cphamn1_0569	-	addiction module killer protein
542	 50.15	0	599502..599828	+	108	189499542	-	Cphamn1_0570	-	putative transcriptional regulator
543	 51.58	0	600029..600313	+	94	189499543	-	Cphamn1_0571	-	transcriptional regulator, XRE family
544	 52.54	0	600423..601958	+	511	189499544	-	Cphamn1_0572	-	transposase IS4 family protein
48.93	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.