IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides BS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.93 STD DEV: 4.12
Chlorobium phaeobacteroides BS1, complete genome - 1..2736403
2469 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
418	 46.05	0	469681..470034	-	117	189499418	-	Cphamn1_0443	-	hypothetical protein
419	 45.07	0	470172..470810	-	212	189499419	-	Cphamn1_0444	-	RNA polymerase, sigma-24 subunit, ECF subfamily
420	 48.62	0	470944..471702	-	252	189499420	-	Cphamn1_0445	-	Methyltransferase type 11
421	 48.55	0	471709..472155	-	148	189499421	-	Cphamn1_0446	-	putative thiol-disulphide oxidoreductase DCC
422	 48.23	0	472173..473555	-	460	189499422	-	Cphamn1_0447	-	Phosphoglucomutase
423	 50.43	0	473675..474826	+	383	189499423	-	Cphamn1_0448	-	lipid-A-disaccharide synthase
424	 43.18	-1	474886..475149	+	87	189499424	-	Cphamn1_0449	-	hypothetical protein
425	 35.83	-2	475150..475269	+	39	189499425	-	Cphamn1_0450	-	hypothetical protein
426	 51.96	0	475266..476081	+	271	189499426	-	Cphamn1_0451	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
427	 51.49	0	476078..476479	+	133	189499427	-	Cphamn1_0452	-	TOBE domain protein
428	 44.99	0	476476..477153	+	225	189499428	-	Cphamn1_0453	-	molybdate ABC transporter, inner membrane subunit
429	 49.78	0	477158..478063	+	301	189499429	-	Cphamn1_0454	-	ABC transporter-related protein
430	 53.11	+1	478086..480047	-	653	189499430	-	Cphamn1_0455	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
431	 48.67	0	480075..481052	-	325	189499431	-	Cphamn1_0456	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
432	 46.02	0	481127..481528	-	133	189499432	-	Cphamn1_0457	-	hypothetical protein
433	 41.10	-1	481512..481910	-	132	189499433	-	Cphamn1_0458	-	hypothetical protein
434	 45.32	0	482007..482273	-	88	189499434	-	Cphamn1_0459	-	hypothetical protein
435	 48.06	0	482388..483161	-	257	189499435	-	Cphamn1_0460	-	short-chain dehydrogenase/reductase SDR
436	 47.81	0	483434..484117	+	227	189499436	-	Cphamn1_0461	-	ABC transporter-related protein
437	 51.53	0	484127..485659	+	510	189499437	-	Cphamn1_0462	-	hypothetical protein
438	 53.58	+1	485677..487731	+	684	189499438	-	Cphamn1_0463	-	DNA ligase, NAD-dependent
439	 51.84	0	487969..488676	+	235	189499439	-	Cphamn1_0464	-	hypothetical protein
440	 49.33	0	488704..489453	-	249	189499440	-	Cphamn1_0465	-	ubiquinone/menaquinone biosynthesis methyltransferase
441	 45.17	0	489437..489850	-	137	189499441	-	Cphamn1_0466	-	Phosphoribosyl-AMP cyclohydrolase
442	 50.23	0	490024..491106	+	360	189499442	-	Cphamn1_0467	-	efflux transporter, RND family, MFP subunit
443	 43.42	-1	491189..491416	+	75	189499443	-	Cphamn1_0468	-	hypothetical protein
444	 51.39	0	491429..492325	+	298	189499444	-	Cphamn1_0469	-	Auxin Efflux Carrier
445	 52.32	0	492429..492881	+	150	189499445	-	Cphamn1_0470	-	protein of unknown function DUF1499
446	 50.00	0	493112..493699	+	195	189499446	-	Cphamn1_0471	-	NADH dehydrogenase (ubiquinone) 24 kDa subunit
447	 50.42	0	493696..495480	+	594	189499447	-	Cphamn1_0472	-	NADH dehydrogenase (quinone)
448	 53.29	+1	495537..498527	+	996	189499448	-	Cphamn1_0473	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
449	 48.68	0	498548..499153	+	201	189499449	-	Cphamn1_0474	-	imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
450	 47.89	0	499176..499958	+	260	189499450	-	Cphamn1_0475	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
451	 46.86	0	500012..500617	+	201	189499451	-	Cphamn1_0476	-	segregation and condensation protein B
452	 50.33	0	500598..501362	+	254	189499452	-	Cphamn1_0477	-	pseudouridine synthase
453	 53.12	+1	501397..503367	+	656	189499453	-	Cphamn1_0478	-	hypothetical protein
454	 51.46	0	503502..503981	+	159	189499454	-	Cphamn1_0479	-	Exonuclease RNase T and DNA polymerase III
455	 55.00	+1	503998..504357	+	119	189499455	-	Cphamn1_0480	-	Domain of unknown function DUF1801
456	 51.14	0	504396..504833	-	145	189499456	-	Cphamn1_0481	-	hypothetical protein
457	 48.48	0	504909..505172	-	87	189499457	-	Cphamn1_0482	-	hypothetical protein
458	 53.12	+1	505601..506257	+	218	189499458	-	Cphamn1_0484	-	HAD-superfamily hydrolase, subfamily IA, variant 1
459	 53.48	+1	506931..507491	+	186	189499459	-	Cphamn1_0485	-	cell wall hydrolase SleB
460	 40.52	-2	507580..507732	+	50	189499460	-	Cphamn1_0486	-	hypothetical protein
461	 51.41	0	507775..508731	-	318	189499461	-	Cphamn1_0487	-	Sua5/YciO/YrdC/YwlC family protein
462	 48.42	0	508777..509439	-	220	189499462	-	Cphamn1_0488	-	phosphatidate cytidylyltransferase
463	 47.22	0	509930..511513	+	527	189499463	-	Cphamn1_0489	-	Ppx/GppA phosphatase
464	 49.95	0	511503..513326	+	607	189499464	-	Cphamn1_0490	-	para-aminobenzoate synthase, subunit I
465	 44.72	-1	513323..513445	+	40	189499465	-	Cphamn1_0491	-	hypothetical protein
466	 48.32	0	513483..513929	+	148	189499466	-	Cphamn1_0492	-	hypothetical protein
467	 50.23	0	514092..514754	-	220	189499467	-	Cphamn1_0493	-	endonuclease III
468	 56.51	+1	514729..516225	-	498	189499468	-	Cphamn1_0494	-	transposase, IS5 family, putative
469	 48.99	0	516419..517114	-	231	189499469	-	Cphamn1_0495	-	metallophosphoesterase
470	 45.56	0	517128..517634	-	168	189499470	-	Cphamn1_0496	-	NusB antitermination factor
471	 45.31	0	517653..518345	-	230	189499471	-	Cphamn1_0497	-	Haloacid dehalogenase domain protein hydrolase
472	 45.84	0	518338..521895	-	1185	189499472	-	Cphamn1_0498	-	chromosome segregation protein SMC
473	 51.29	0	522023..522913	-	296	189499473	-	Cphamn1_0499	-	dihydropteroate synthase
474	 51.80	0	522988..524016	-	342	189499474	-	Cphamn1_0500	-	peptidase M50
475	 48.12	0	524032..524484	-	150	189499475	-	Cphamn1_0501	-	cytochrome c, putative
476	 48.89	0	524531..525430	-	299	189499476	-	Cphamn1_0502	-	Methyltransferase type 12
477	 49.80	0	525798..526301	+	167	189499477	-	Cphamn1_0503	-	transcriptional regulator, BadM/Rrf2 family
478	 54.31	+1	526273..527130	+	285	189499478	-	Cphamn1_0504	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
479	 50.24	0	527333..527752	+	139	189499479	-	Cphamn1_0505	-	Tetratricopeptide TPR_2 repeat protein
480	 51.81	0	527756..529384	+	542	189499480	-	Cphamn1_0506	-	hybrid cluster protein
481	 55.65	+1	529446..530516	-	356	189499481	-	Cphamn1_0507	-	permease
482	 49.15	0	530536..530769	-	77	189499482	-	Cphamn1_0508	-	redox-active disulfide protein 2
483	 51.46	0	530825..531166	-	113	189499483	-	Cphamn1_0509	-	transcriptional regulator, ArsR family
484	 53.19	+1	531464..532279	+	271	189499484	-	Cphamn1_0510	-	zinc/iron permease
485	 47.92	0	532496..533338	+	280	189499485	-	Cphamn1_0511	-	hypothetical protein
486	 50.00	0	533662..535167	+	501	189499486	-	Cphamn1_0512	-	Alkaline phosphatase
487	 47.29	0	535220..536380	+	386	189499487	-	Cphamn1_0513	-	YibE/F family protein
488	 53.18	+1	536425..540264	-	1279	189499488	-	Cphamn1_0514	-	RTX toxins and related Ca2+-binding protein
489	 50.66	0	540734..542545	+	603	189499489	-	Cphamn1_0515	-	Radical SAM domain protein
490	 51.23	0	542574..543305	+	243	189499490	-	Cphamn1_0516	-	DNA alkylation repair enzyme
491	 44.44	-1	543311..543679	+	122	189499491	-	Cphamn1_0517	-	transcriptional regulator, ArsR family
492	 50.61	0	543757..544827	+	356	189499492	-	Cphamn1_0518	-	permease
493	 49.91	0	544952..546019	+	355	189499493	-	Cphamn1_0519	-	protein of unknown function DUF900 hydrolase family protein
494	 50.76	0	546054..546707	+	217	189499494	-	Cphamn1_0520	-	HAD-superfamily hydrolase, subfamily IA, variant 3
495	 50.40	0	546782..549628	-	948	189499495	-	Cphamn1_0521	-	excinuclease ABC, A subunit
496	 43.56	-1	549988..550212	+	74	189499496	-	Cphamn1_0522	-	hypothetical protein
497	 50.24	0	550265..553015	-	916	189499497	-	Cphamn1_0523	-	pyruvate, phosphate dikinase
498	 51.90	0	553333..554199	+	288	189499498	-	Cphamn1_0524	-	inner-membrane translocator
499	 48.71	0	554371..555027	-	218	189499499	-	Cphamn1_0525	-	ThiJ/PfpI domain protein
500	 51.91	0	555494..556279	+	261	189499500	-	Cphamn1_0526	-	hypothetical protein
501	 54.69	+1	556336..557028	+	230	189499501	-	Cphamn1_0527	-	Silent information regulator protein Sir2
502	 50.00	0	557132..557635	-	167	189499502	-	Cphamn1_0528	-	hypothetical protein
503	 44.57	-1	557752..558294	+	180	189499503	-	Cphamn1_0529	-	isochorismatase hydrolase
504	 48.99	0	558637..559677	-	346	189499504	-	Cphamn1_0530	-	tetraacyldisaccharide 4'-kinase
505	 48.06	0	559670..560287	-	205	189499505	-	Cphamn1_0531	-	protein of unknown function DUF374
506	 51.83	0	560511..561791	+	426	189499506	-	Cphamn1_0532	-	phosphoribosylamine/glycine ligase
507	 48.15	0	561808..562239	+	143	189499507	-	Cphamn1_0533	-	hypothetical protein
508	 49.93	0	562323..563810	+	495	189499508	-	Cphamn1_0534	-	Carbamoyl-phosphate synthase L chain ATP-binding
509	 50.45	0	563812..564588	+	258	189499509	-	Cphamn1_0535	-	Indole-3-glycerol-phosphate synthase
510	 49.55	0	564569..565234	-	221	189499510	-	Cphamn1_0536	-	Ribulose-phosphate 3-epimerase
511	 46.70	0	565307..567475	-	722	189499511	-	Cphamn1_0537	-	surface antigen (D15)
512	 46.05	0	567524..567751	-	75	189499512	-	Cphamn1_0538	-	hypothetical protein
513	 46.28	0	567776..568702	-	308	189499513	-	Cphamn1_0539	-	Peptidase M23
514	 49.06	0	568792..571602	-	936	189499514	-	Cphamn1_0540	-	DNA polymerase I
515	 47.38	0	571586..572425	-	279	189499515	-	Cphamn1_0541	-	Prephenate dehydratase
516	 48.47	0	572554..573306	+	250	189499516	-	Cphamn1_0542	-	protein of unknown function DUF28
517	 50.09	0	573331..573891	+	186	189499517	-	Cphamn1_0543	-	crossover junction endodeoxyribonuclease RuvC
48.93	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.