IslandPath Analysis: Chlorobium phaeobacteroides BS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.93   STD DEV: 4.12
Chlorobium phaeobacteroides BS1, complete genome - 1..2736403
2469 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 44.92	0	1..1476	+	491	189499001	-	Cphamn1_0001	-	chromosomal replication initiator protein DnaA
2	 41.51	-1	1773..2897	+	374	189499002	-	Cphamn1_0002	-	DNA polymerase III, beta subunit
3	 44.05	-1	2914..4005	+	363	189499003	-	Cphamn1_0003	-	DNA replication and repair protein RecF
4	 41.50	-1	4109..4402	+	97	189499004	-	Cphamn1_0004	-	hypothetical protein
5	 46.61	0	4548..5300	+	250	189499005	-	Cphamn1_0005	-	peptidase M50
6	 41.78	-1	5622..6899	-	425	189499006	-	Cphamn1_0006	-	beta-lactamase domain protein
7	 42.99	-1	7022..9412	-	796	189499007	-	Cphamn1_0007	-	DNA polymerase B region
8	 48.99	0	9486..11357	-	623	189499008	-	Cphamn1_0008	-	glucose inhibited division protein A
9	 47.73	0	12118..12492	+	124	189499009	-	Cphamn1_0009	-	cytochrome c class I
10	 49.96	0	12507..13799	+	430	189499010	-	Cphamn1_0010	-	Flavocytochrome c sulphide dehydrogenase flavin-binding
11	 50.44	0	14086..15903	+	605	189499011	-	Cphamn1_0011	-	protein-export membrane protein SecD
12	 46.71	0	15927..16853	+	308	189499012	-	Cphamn1_0012	-	protein-export membrane protein SecF
13	 47.12	0	16858..17691	+	277	189499013	-	Cphamn1_0013	-	hypothetical protein
14	 48.00	0	17725..19047	+	440	189499014	-	Cphamn1_0014	-	PpiC-type peptidyl-prolyl cis-trans isomerase
15	 48.22	0	19036..20970	-	644	189499015	-	Cphamn1_0015	-	DNA gyrase, B subunit
16	 43.26	-1	20997..21137	-	46	189499016	-	Cphamn1_0016	-	hypothetical protein
17	 48.82	0	21181..21561	-	126	189499017	-	Cphamn1_0017	-	protein of unknown function UPF0102
18	 51.92	0	21575..22198	-	207	189499018	-	Cphamn1_0018	-	Ribonuclease H
19	 51.02	0	22353..24065	+	570	189499019	-	Cphamn1_0019	-	ribonuclease, Rne/Rng family
20	 52.10	0	24316..25173	+	285	189499020	-	Cphamn1_0020	-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
21	 51.54	0	25214..26905	+	563	189499021	-	Cphamn1_0021	-	carboxyl-terminal protease
22	 49.86	0	26895..27584	-	229	189499022	-	Cphamn1_0022	-	hypothetical protein
23	 50.61	0	27585..28724	-	379	189499023	-	Cphamn1_0023	-	geranylgeranyl reductase
24	 50.99	0	28826..30292	-	488	189499024	-	Cphamn1_0024	-	glycyl-tRNA synthetase
25	 54.55	+1	30477..30608	-	43	189499025	-	Cphamn1_0025	-	hypothetical protein
26	 50.68	0	30773..31360	+	195	189499026	-	Cphamn1_0026	-	hypothetical protein
27	 51.61	0	31718..33085	+	455	189499027	-	Cphamn1_0027	-	aminotransferase class V
28	 50.98	0	33469..33774	-	101	189499028	-	Cphamn1_0028	-	ATP-dependent Clp protease adaptor protein ClpS
29	 52.37	0	34128..35078	-	316	189499029	-	Cphamn1_0029	-	Muramoyltetrapeptide carboxypeptidase
30	 48.31	0	35162..35428	-	88	189499030	-	Cphamn1_0030	-	H+transporting two-sector ATPase delta/epsilon subunit
31	 50.11	0	35443..36831	-	462	189499031	-	Cphamn1_0031	-	ATP synthase F1, beta subunit
32	 48.27	0	37167..37715	+	182	189499032	-	Cphamn1_0032	-	Redoxin domain protein
33	 51.88	0	37806..39665	+	619	189499033	-	Cphamn1_0033	-	Phosphoenolpyruvate carboxykinase (GTP)
34	 47.76	0	40080..40280	+	66	189499034	-	Cphamn1_0034	-	hypothetical protein
35	 47.22	0	40349..40564	-	71	189499035	-	Cphamn1_0035	-	protein of unknown function DUF1458
36	 44.20	-1	40588..40725	-	45	189499036	-	Cphamn1_0036	-	hypothetical protein
37	 48.93	0	40839..41351	+	170	189499037	-	Cphamn1_0037	-	hypothetical protein
38	 50.06	0	41434..42216	+	260	189499038	-	Cphamn1_0038	-	Cobyrinic acid ac-diamide synthase
39	 48.37	0	42408..42713	+	101	189499039	-	Cphamn1_0039	-	hypothetical protein
40	 54.08	+1	42815..44347	+	510	189499040	-	Cphamn1_0040	-	sodium:neurotransmitter symporter
41	 46.30	0	44542..45867	+	441	189499041	-	Cphamn1_0041	-	DNA methylase N-4/N-6 domain protein
42	 45.86	0	45860..46306	+	148	189499042	-	Cphamn1_0042	-	conserved hypothetical cytosolic protein
43	 49.51	0	46330..47856	-	508	189499043	-	Cphamn1_0043	-	transposase IS4 family protein
44	 43.46	-1	48067..48372	-	101	189499044	-	Cphamn1_0044	-	hypothetical protein
45	 50.38	0	48597..48860	+	87	189499045	-	Cphamn1_0045	-	hypothetical protein
46	 35.84	-2	48910..49908	+	332	189499046	-	Cphamn1_0046	-	CHAP domain containing protein
47	 34.84	-2	49910..50374	+	154	189499047	-	Cphamn1_0047	-	hypothetical protein
48	 34.29	-2	50473..50577	+	34	189499048	-	Cphamn1_0048	-	hypothetical protein
49	 36.19	-2	52230..52928	+	232	189499049	-	Cphamn1_0050	-	cytochrome c class I
50	 47.33	0	53329..53571	-	80	189499050	-	Cphamn1_0051	-	hypothetical protein
51	 54.15	+1	53645..55210	+	521	189499051	-	Cphamn1_0052	-	Integrase catalytic region
52	 53.98	+1	55228..55968	+	246	189499052	-	Cphamn1_0053	-	IstB domain protein ATP-binding protein
53	 45.02	0	56069..56590	-	173	189499053	-	Cphamn1_0054	-	hypothetical protein
54	 53.59	+1	56795..57031	-	78	189499054	-	Cphamn1_0055	-	hypothetical protein
55	 42.03	-1	57126..57470	-	114	189499055	-	Cphamn1_0056	-	hypothetical protein
56	 47.11	0	57467..57691	-	74	189499056	-	Cphamn1_0057	-	protein of unknown function DUF433
57	 48.32	0	57715..58161	-	148	189499057	-	Cphamn1_0058	-	PilT protein domain protein
58	 56.08	+1	58520..59842	-	440	189499058	-	Cphamn1_0060	-	amidohydrolase
59	 43.52	-1	59817..59924	-	35	189499059	-	Cphamn1_0061	-	hypothetical protein
60	 53.02	0	59989..60303	+	104	189499060	-	Cphamn1_0062	-	hypothetical protein
61	 47.79	0	61934..63109	-	391	189499061	-	Cphamn1_0064	-	ATPase (AAA+ superfamily)-like protein
62	 47.00	0	64936..65535	+	199	189499062	-	Cphamn1_0068	-	nucleotidyltransferase substrate binding protein, HI0074 family
63	 47.09	0	65532..65858	+	108	189499063	-	Cphamn1_0069	-	DNA polymerase beta domain protein region
64	 53.33	+1	65972..66376	-	134	189499064	-	Cphamn1_0070	-	hypothetical protein
65	 53.89	+1	66567..67145	+	192	189499065	-	Cphamn1_0071	-	ErfK/YbiS/YcfS/YnhG family protein
66	 54.12	+1	67205..69229	-	674	189499066	-	Cphamn1_0072	-	ATP-dependent DNA helicase RecQ
67	 54.77	+1	69330..70388	+	352	189499067	-	Cphamn1_0073	-	Radical SAM domain protein
68	 51.96	0	70536..72833	+	765	189499068	-	Cphamn1_0074	-	NADH dehydrogenase (quinone)
69	 53.48	+1	72836..73252	+	138	189499069	-	Cphamn1_0075	-	Na+/H+ antiporter MnhB subunit-related protein
70	 52.46	0	73249..73614	+	121	189499070	-	Cphamn1_0076	-	NADH-ubiquinone oxidoreductase chain 4L
71	 51.70	0	73626..75128	+	500	189499071	-	Cphamn1_0077	-	NADH dehydrogenase (quinone)
72	 51.48	0	75125..75598	+	157	189499072	-	Cphamn1_0078	-	cation antiporter
73	 46.74	0	75595..75870	+	91	189499073	-	Cphamn1_0079	-	multiple resistance and pH regulation protein F
74	 52.42	0	75863..76192	+	109	189499074	-	Cphamn1_0080	-	monovalent cation/proton antiporter, MnhG/PhaG subunit
75	 48.06	0	76319..76807	+	162	189499075	-	Cphamn1_0081	-	hypothetical protein
76	 49.02	0	76920..77174	+	84	189499076	-	Cphamn1_0082	-	hypothetical protein
77	 46.85	0	77291..77512	-	73	189499077	-	Cphamn1_0083	-	protein of unknown function nitrogen fixation
78	 49.85	0	77519..77857	-	112	189499078	-	Cphamn1_0084	-	hypothetical protein
79	 50.84	0	78018..78611	+	197	189499079	-	Cphamn1_0085	-	NAD(P)H dehydrogenase (quinone)
80	 50.68	0	78632..80533	+	633	189499080	-	Cphamn1_0086	-	potassium efflux system protein
81	 50.96	0	80701..82158	-	485	189499081	-	Cphamn1_0087	-	cation transporter
82	 50.47	0	82189..83577	-	462	189499082	-	Cphamn1_0088	-	TrkA-N domain protein
83	 49.81	0	83730..84500	-	256	189499083	-	Cphamn1_0089	-	hypothetical protein
84	 51.48	0	84605..85177	+	190	189499084	-	Cphamn1_0090	-	methionine-R-sulfoxide reductase
85	 48.88	0	85202..86410	-	402	189499085	-	Cphamn1_0091	-	arsenite-activated ATPase ArsA
86	 42.08	-1	86514..86696	-	60	189499086	-	Cphamn1_0092	-	hypothetical protein
87	 48.89	0	86755..87069	-	104	189499087	-	Cphamn1_0093	-	hypothetical protein
88	 51.96	0	87304..87507	-	67	189499088	-	Cphamn1_0094	-	Ion transport 2 domain protein
89	 40.30	-2	87607..88209	-	200	189499089	-	Cphamn1_0095	-	hypothetical protein
90	 51.30	0	88279..89352	-	357	189499090	-	Cphamn1_0096	-	peptide chain release factor 1
91	 50.66	0	89382..90743	-	453	189499091	-	Cphamn1_0097	-	membrane-associated zinc metalloprotease
92	 52.57	0	90804..91952	-	382	189499092	-	Cphamn1_0098	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
93	 49.60	0	92311..92685	-	124	189499093	-	Cphamn1_0099	-	acylphosphatase
94	 49.98	0	92669..94729	-	686	189499094	-	Cphamn1_0100	-	ATP-dependent metalloprotease FtsH
95	 50.18	0	95138..95962	+	274	189499095	-	Cphamn1_0101	-	orotidine 5'-phosphate decarboxylase
96	 50.92	0	96005..97852	+	615	189499096	-	Cphamn1_0102	-	glucosamine/fructose-6-phosphate aminotransferase, isomerizing
97	 49.73	0	98083..99021	+	312	189499097	-	Cphamn1_0103	-	domain of unknown function DUF1731
98	 46.46	0	99095..99589	+	164	189499098	-	Cphamn1_0104	-	Ferritin Dps family protein
99	 46.77	0	99653..99838	+	61	189499099	-	Cphamn1_0105	-	hypothetical protein
100	 47.25	0	99949..100221	-	90	189499100	-	Cphamn1_0106	-	RNP-1 like RNA-binding protein
48.93	MEAN

4.12	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.