IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides BS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.93 STD DEV: 4.12
Chlorobium phaeobacteroides BS1, complete genome - 1..2736403
2469 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2324	 46.31	0	2578075..2578521	-	148	189501324	-	Cphamn1_2418	-	hypothetical protein
2325	 49.16	0	2578521..2578994	-	157	189501325	-	Cphamn1_2419	-	plasmid maintenance system antidote protein, XRE family
2326	 44.39	-1	2578998..2579576	-	192	189501326	-	Cphamn1_2420	-	hypothetical protein
2327	 53.01	0	2579584..2582703	-	1039	189501327	-	Cphamn1_2421	-	type III restriction protein res subunit
2328	 55.35	+1	2582934..2583896	-	320	189501328	-	Cphamn1_2422	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2329	 41.67	-1	2584435..2584554	+	39	189501329	-	Cphamn1_2423	-	hypothetical protein
2330	 54.93	+1	2585178..2585816	-	212	189501330	-	Cphamn1_2424	-	hypothetical protein
2331	 52.31	0	2586181..2586786	-	201	189501331	-	Cphamn1_2425	-	cytochrome B561
2332	 52.80	0	2586783..2588390	-	535	189501332	-	Cphamn1_2426	-	cytochrome c family protein
2333	 45.83	0	2588523..2588666	+	47	189501333	-	Cphamn1_2427	-	hypothetical protein
2334	 50.56	0	2588719..2590152	-	477	189501334	-	Cphamn1_2428	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2335	 48.28	0	2590747..2591181	+	144	189501335	-	Cphamn1_2429	-	Holliday junction resolvase YqgF
2336	 50.17	0	2591309..2591890	+	193	189501336	-	Cphamn1_2430	-	orotate phosphoribosyltransferase
2337	 49.71	0	2591902..2592768	+	288	189501337	-	Cphamn1_2431	-	Prephenate dehydrogenase
2338	 48.48	0	2592765..2593622	+	285	189501338	-	Cphamn1_2432	-	ATP-NAD/AcoX kinase
2339	 51.06	0	2593649..2595115	+	488	189501339	-	Cphamn1_2433	-	hypothetical protein
2340	 56.51	+1	2595188..2596684	-	498	189501340	-	Cphamn1_2434	-	transposase, IS5 family, putative
2341	 51.78	0	2596845..2597603	+	252	189501341	-	Cphamn1_2435	-	Tetratricopeptide TPR_2 repeat protein
2342	 49.12	0	2597642..2598211	-	189	189501342	-	Cphamn1_2436	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family
2343	 56.08	+1	2598323..2599729	+	468	189501343	-	Cphamn1_2437	-	transposase IS4 family protein
2344	 51.53	0	2600005..2600889	-	294	189501344	-	Cphamn1_2438	-	2-dehydro-3-deoxyphosphooctonate aldolase
2345	 48.07	0	2601309..2602631	+	440	189501345	-	Cphamn1_2439	-	ATPase AAA-2 domain protein
2346	 50.27	0	2602647..2603768	+	373	189501346	-	Cphamn1_2440	-	Beta-N-acetylhexosaminidase
2347	 51.92	0	2603765..2604259	+	164	189501347	-	Cphamn1_2441	-	putative phosphohistidine phosphatase, SixA
2348	 52.64	0	2604434..2605438	-	334	189501348	-	Cphamn1_2442	-	Glycerol-3-phosphate dehydrogenase (NAD(P)(+))
2349	 48.31	0	2605463..2606170	-	235	189501349	-	Cphamn1_2443	-	protein of unknown function DUF205
2350	 50.46	0	2606217..2607203	-	328	189501350	-	Cphamn1_2444	-	phosphoribosylformylglycinamidine cyclo-ligase
2351	 49.44	0	2607298..2608713	-	471	189501351	-	Cphamn1_2445	-	aspartate kinase
2352	 45.14	0	2608806..2609432	+	208	189501352	-	Cphamn1_2446	-	NLP/P60 protein
2353	 46.76	0	2609533..2610396	+	287	189501353	-	Cphamn1_2447	-	ribosomal L11 methyltransferase
2354	 52.14	0	2610414..2611349	+	311	189501354	-	Cphamn1_2448	-	Ppx/GppA phosphatase
2355	 48.23	0	2612010..2613056	-	348	189501355	-	Cphamn1_2450	-	transposase IS4 family protein
2356	 46.67	0	2613152..2613331	-	59	189501356	-	Cphamn1_2451	-	hypothetical protein
2357	 50.62	0	2613533..2614741	-	402	189501357	-	Cphamn1_2452	-	hypothetical protein
2358	 53.56	+1	2614769..2616073	-	434	189501358	-	Cphamn1_2453	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
2359	 54.07	+1	2616103..2616777	-	224	189501359	-	Cphamn1_2454	-	dethiobiotin synthase
2360	 52.80	0	2616962..2617747	-	261	189501360	-	Cphamn1_2455	-	biotin biosynthesis protein BioC
2361	 51.30	0	2617732..2618421	-	229	189501361	-	Cphamn1_2456	-	protein of unknown function DUF452
2362	 55.08	+1	2618648..2619847	-	399	189501362	-	Cphamn1_2457	-	8-amino-7-oxononanoate synthase
2363	 51.96	0	2619844..2620863	-	339	189501363	-	Cphamn1_2458	-	Biotin synthase
2364	 53.74	+1	2620877..2621866	-	329	189501364	-	Cphamn1_2459	-	biotin/acetyl-CoA-carboxylase ligase
2365	 55.29	+1	2622280..2622780	-	166	189501365	-	Cphamn1_2460	-	Rubrerythrin
2366	 54.91	+1	2622842..2624431	-	529	189501366	-	Cphamn1_2461	-	Glutamate synthase (NADPH)
2367	 52.00	0	2624449..2626119	-	556	189501367	-	Cphamn1_2462	-	N-acetylmuramoyl-L-alanine amidase
2368	 51.22	0	2626484..2628898	+	804	189501368	-	Cphamn1_2463	-	DNA topoisomerase I
2369	 51.10	0	2628924..2631062	-	712	189501369	-	Cphamn1_2464	-	ferrous iron transport protein B
2370	 51.58	0	2631066..2631350	-	94	189501370	-	Cphamn1_2465	-	FeoA family protein
2371	 53.82	+1	2631488..2634235	-	915	189501371	-	Cphamn1_2466	-	aconitate hydratase 1
2372	 49.74	0	2634444..2634827	-	127	189501372	-	Cphamn1_2467	-	histidine triad (HIT) protein
2373	 48.04	0	2635161..2635799	+	212	189501373	-	Cphamn1_2468	-	hypothetical protein
2374	 42.83	-1	2636050..2636523	-	157	189501374	-	Cphamn1_2469	-	hypothetical protein
2375	 42.29	-1	2636533..2636934	-	133	189501375	-	Cphamn1_2470	-	hypothetical protein
2376	 47.72	0	2637115..2638101	-	328	189501376	-	Cphamn1_2471	-	dihydroorotate dehydrogenase
2377	 51.18	0	2638206..2639651	-	481	189501377	-	Cphamn1_2472	-	Alkaline phosphatase
2378	 48.29	0	2639654..2640415	-	253	189501378	-	Cphamn1_2473	-	alpha/beta hydrolase fold
2379	 50.34	0	2640618..2641205	+	195	189501379	-	Cphamn1_2474	-	rare lipoprotein A
2380	 49.45	0	2641218..2641583	+	121	189501380	-	Cphamn1_2475	-	Methylated-DNA-(protein)-cysteine S-methyltransferase DNA binding
2381	 50.45	0	2641549..2642220	-	223	189501381	-	Cphamn1_2476	-	transaldolase
2382	 53.77	+1	2643075..2644400	-	441	189501382	-	Cphamn1_2477	-	hypothetical protein
2383	 51.65	0	2644465..2645862	-	465	189501383	-	Cphamn1_2478	-	PGAP1 family protein
2384	 52.88	0	2646154..2647350	-	398	189501384	-	Cphamn1_2479	-	protein of unknown function DUF323
2385	 52.69	0	2647583..2647768	+	61	189501385	-	Cphamn1_2480	-	hypothetical protein
2386	 43.79	-1	2648153..2648659	-	168	189501386	-	Cphamn1_2481	-	PIN domain protein
2387	 48.35	0	2648656..2649807	-	383	189501387	-	Cphamn1_2482	-	protein of unknown function DUF955
2388	 53.97	+1	2650110..2650235	+	41	189501388	-	Cphamn1_2483	-	hypothetical protein
2389	 51.65	0	2650507..2651565	-	352	189501389	-	Cphamn1_2484	-	deoxyhypusine synthase
2390	 50.44	0	2652043..2653065	+	340	189501390	-	Cphamn1_2485	-	tryptophanyl-tRNA synthetase
2391	 50.36	0	2653105..2653803	+	232	189501391	-	Cphamn1_2486	-	beta-phosphoglucomutase family hydrolase
2392	 50.12	0	2653821..2655482	+	553	189501392	-	Cphamn1_2487	-	arginyl-tRNA synthetase
2393	 48.74	0	2655875..2656471	-	198	189501393	-	Cphamn1_2488	-	nicotinate (nicotinamide) nucleotide adenylyltransferase
2394	 47.00	0	2656483..2657382	-	299	189501394	-	Cphamn1_2489	-	Tetratricopeptide TPR_2 repeat protein
2395	 49.60	0	2657722..2657973	-	83	189501395	-	Cphamn1_2490	-	hypothetical protein
2396	 49.45	0	2658110..2658562	-	150	189501396	-	Cphamn1_2491	-	hypothetical protein
2397	 49.68	0	2659297..2660403	-	368	189501397	-	Cphamn1_2492	-	plasmid maintenance system antidote protein, XRE family
2398	 42.40	-1	2660403..2660744	-	113	189501398	-	Cphamn1_2493	-	plasmid maintenance system killer
2399	 42.58	-1	2660784..2661194	-	136	189501399	-	Cphamn1_2494	-	hypothetical protein
2400	 56.96	+1	2661220..2664567	-	1115	189501400	-	Cphamn1_2495	-	ATPase (AAA+ superfamily)-like protein
2401	 55.49	+1	2664571..2667459	-	962	189501401	-	Cphamn1_2496	-	protein of unknown function DUF1156
2402	 52.76	0	2667456..2668505	-	349	189501402	-	Cphamn1_2497	-	protein of unknown function DUF1016
2403	 53.46	+1	2668543..2670867	-	774	189501403	-	Cphamn1_2498	-	helicase domain protein
2404	 48.07	0	2671554..2672096	-	180	189501404	-	Cphamn1_2499	-	ATP synthase F1, delta subunit
2405	 44.89	0	2672111..2672638	-	175	189501405	-	Cphamn1_2500	-	ATP synthase F0, B subunit
2406	 50.63	0	2672748..2672984	-	78	189501406	-	Cphamn1_2501	-	ATP synthase F0, C subunit
2407	 49.85	0	2673091..2674107	-	338	189501407	-	Cphamn1_2502	-	ATP synthase F0, A subunit
2408	 41.86	-1	2674104..2674490	-	128	189501408	-	Cphamn1_2503	-	hypothetical protein
2409	 48.19	0	2674539..2674787	-	82	189501409	-	Cphamn1_2504	-	hypothetical protein
2410	 47.95	0	2674824..2675213	-	129	189501410	-	Cphamn1_2505	-	hypothetical protein
2411	 53.22	+1	2675327..2676724	-	465	189501411	-	Cphamn1_2506	-	hypothetical protein
2412	 40.00	-2	2676834..2676983	-	49	189501412	-	Cphamn1_2507	-	hypothetical protein
2413	 47.40	0	2677022..2677810	-	262	189501413	-	Cphamn1_2508	-	Peptidase M23
2414	 48.99	0	2677816..2678805	-	329	189501414	-	Cphamn1_2509	-	UDP-glucose 4-epimerase
2415	 52.67	0	2678899..2679648	+	249	189501415	-	Cphamn1_2510	-	protein of unknown function DUF152
2416	 52.51	0	2679614..2679832	-	72	189501416	-	Cphamn1_2511	-	hypothetical protein
2417	 49.80	0	2680002..2681021	+	339	189501417	-	Cphamn1_2512	-	C-20 methyltransferase BchU
2418	 52.59	0	2681293..2682585	-	430	189501418	-	Cphamn1_2513	-	acetyl-CoA hydrolase/transferase
2419	 53.70	+1	2682709..2684466	-	585	189501419	-	Cphamn1_2514	-	succinate dehydrogenase, flavoprotein subunit
2420	 51.33	0	2684480..2684968	-	162	189501420	-	Cphamn1_2515	-	succinate dehydrogenase, membrane subunit, putative
2421	 47.96	0	2684965..2685429	-	154	189501421	-	Cphamn1_2516	-	succinate dehydrogenase, cytochrome b556 subunit
2422	 53.05	0	2685509..2686771	-	420	189501422	-	Cphamn1_2517	-	cell division protein FtsZ
2423	 51.13	0	2686833..2688119	-	428	189501423	-	Cphamn1_2518	-	cell division protein FtsA
48.93	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.