IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides BS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.93 STD DEV: 4.12
Chlorobium phaeobacteroides BS1, complete genome - 1..2736403
2469 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2274	 54.78	+1	2528139..2529080	-	313	189501274	-	Cphamn1_2362	-	molybdenum cofactor biosynthesis protein C
2275	 45.39	0	2529554..2530822	-	422	189501275	-	Cphamn1_2363	-	hypothetical protein
2276	 48.39	0	2531411..2531908	+	165	189501276	-	Cphamn1_2364	-	arsenite oxidase, small subunit
2277	 46.57	0	2531922..2534483	+	853	189501277	-	Cphamn1_2365	-	arsenite oxidase, large subunit
2278	 44.44	-1	2534662..2535660	+	332	189501278	-	Cphamn1_2366	-	molybdenum cofactor biosynthesis protein A
2279	 46.28	0	2535665..2536135	-	156	189501279	-	Cphamn1_2367	-	MOSC domain containing protein
2280	 43.59	-1	2537010..2538179	-	389	189501280	-	Cphamn1_2370	-	transposase IS4 family protein
2281	 52.54	0	2538345..2539880	-	511	189501281	-	Cphamn1_2371	-	transposase IS4 family protein
2282	 40.74	-1	2539949..2540110	-	53	189501282	-	Cphamn1_2372	-	hypothetical protein
2283	 55.04	+1	2541326..2542159	-	277	189501283	-	Cphamn1_2374	-	glycerophosphoryl diester phosphodiesterase
2284	 47.09	0	2542210..2542725	-	171	189501284	-	Cphamn1_2375	-	hypothetical protein
2285	 47.47	0	2542863..2543159	-	98	189501285	-	Cphamn1_2376	-	hypothetical protein
2286	 51.37	0	2543431..2543613	+	60	189501286	-	Cphamn1_2377	-	Ric1 protein
2287	 50.81	0	2543777..2544943	+	388	189501287	-	Cphamn1_2378	-	molybdopterin-guanine dinucleotide biosynthesis protein B
2288	 47.36	0	2545023..2545514	+	163	189501288	-	Cphamn1_2379	-	UspA domain protein
2289	 52.28	0	2545585..2546814	-	409	189501289	-	Cphamn1_2380	-	NADH:ubiquinone oxidoreductase, subunit F
2290	 47.85	0	2546995..2547621	-	208	189501290	-	Cphamn1_2381	-	NADH:ubiquinone oxidoreductase, subunit E
2291	 51.11	0	2547621..2548250	-	209	189501291	-	Cphamn1_2382	-	NADH:ubiquinone oxidoreductase, subunit D
2292	 47.53	0	2548271..2548897	-	208	189501292	-	Cphamn1_2383	-	NADH:ubiquinone oxidoreductase, subunit C
2293	 52.90	0	2548884..2550038	-	384	189501293	-	Cphamn1_2384	-	NADH:ubiquinone oxidoreductase, subunit B
2294	 49.04	0	2550077..2551432	-	451	189501294	-	Cphamn1_2385	-	NADH:ubiquinone oxidoreductase, subunit A
2295	 52.27	0	2552031..2554274	+	747	189501295	-	Cphamn1_2386	-	molybdopterin oxidoreductase
2296	 52.91	0	2554278..2554844	+	188	189501296	-	Cphamn1_2387	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
2297	 51.06	0	2554847..2555839	+	330	189501297	-	Cphamn1_2388	-	Polysulphide reductase NrfD
2298	 50.16	0	2556019..2556636	-	205	189501298	-	Cphamn1_2389	-	SOUL heme-binding protein
2299	 48.66	0	2556709..2557380	-	223	189501299	-	Cphamn1_2390	-	hypothetical protein
2300	 47.28	0	2557401..2557694	-	97	189501300	-	Cphamn1_2391	-	hypothetical protein
2301	 50.56	0	2557717..2558871	-	384	189501301	-	Cphamn1_2392	-	hypothetical protein
2302	 50.00	0	2559128..2559559	+	143	189501302	-	Cphamn1_2393	-	hypothetical protein
2303	 54.76	+1	2559781..2561199	+	472	189501303	-	Cphamn1_2394	-	alpha amylase catalytic region
2304	 57.02	+1	2561156..2562067	-	303	189501304	-	Cphamn1_2395	-	peptidase M48 Ste24p
2305	 40.85	-1	2562471..2563082	-	203	189501305	-	Cphamn1_2396	-	hypothetical protein
2306	 53.23	+1	2563167..2563367	+	66	189501306	-	Cphamn1_2397	-	hypothetical protein
2307	 51.55	0	2563510..2563767	+	85	189501307	-	Cphamn1_2398	-	hypothetical protein
2308	 51.74	0	2563784..2563984	+	66	189501308	-	Cphamn1_2399	-	putative acetyltransferase
2309	 49.70	0	2563996..2564160	+	54	189501309	-	Cphamn1_2400	-	hypothetical protein
2310	 44.81	-1	2564235..2564879	+	214	189501310	-	Cphamn1_2401	-	hypothetical protein
2311	 46.25	0	2565095..2565574	+	159	189501311	-	Cphamn1_2402	-	Methyltransferase type 11
2312	 47.13	0	2565662..2566009	+	115	189501312	-	Cphamn1_2403	-	Cupin 2 conserved barrel domain protein
2313	 42.12	-1	2566061..2566333	+	90	189501313	-	Cphamn1_2404	-	hypothetical protein
2314	 51.76	0	2566585..2567604	+	339	189501314	-	Cphamn1_2405	-	hypothetical protein
2315	 49.34	0	2567701..2568687	+	328	189501315	-	Cphamn1_2406	-	hypothetical protein
2316	 49.44	0	2569762..2571288	+	508	189501316	-	Cphamn1_2408	-	transposase IS4 family protein
2317	 45.24	0	2572554..2572847	-	97	189501317	-	Cphamn1_2410	-	hypothetical protein
2318	 49.71	0	2572957..2573481	-	174	189501318	-	Cphamn1_2411	-	hypothetical protein
2319	 50.27	0	2573582..2573947	-	121	189501319	-	Cphamn1_2412	-	hypothetical protein
2320	 52.50	0	2574032..2574871	-	279	189501320	-	Cphamn1_2413	-	Integrase catalytic region
2321	 47.77	0	2574895..2575185	-	96	189501321	-	Cphamn1_2414	-	transposase IS3/IS911 family protein
2322	 53.15	+1	2575840..2577237	-	465	189501322	-	Cphamn1_2416	-	hypothetical protein
2323	 54.57	+1	2577662..2578000	-	112	189501323	-	Cphamn1_2417	-	hypothetical protein
2324	 46.31	0	2578075..2578521	-	148	189501324	-	Cphamn1_2418	-	hypothetical protein
2325	 49.16	0	2578521..2578994	-	157	189501325	-	Cphamn1_2419	-	plasmid maintenance system antidote protein, XRE family
2326	 44.39	-1	2578998..2579576	-	192	189501326	-	Cphamn1_2420	-	hypothetical protein
2327	 53.01	0	2579584..2582703	-	1039	189501327	-	Cphamn1_2421	-	type III restriction protein res subunit
2328	 55.35	+1	2582934..2583896	-	320	189501328	-	Cphamn1_2422	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2329	 41.67	-1	2584435..2584554	+	39	189501329	-	Cphamn1_2423	-	hypothetical protein
2330	 54.93	+1	2585178..2585816	-	212	189501330	-	Cphamn1_2424	-	hypothetical protein
2331	 52.31	0	2586181..2586786	-	201	189501331	-	Cphamn1_2425	-	cytochrome B561
2332	 52.80	0	2586783..2588390	-	535	189501332	-	Cphamn1_2426	-	cytochrome c family protein
2333	 45.83	0	2588523..2588666	+	47	189501333	-	Cphamn1_2427	-	hypothetical protein
2334	 50.56	0	2588719..2590152	-	477	189501334	-	Cphamn1_2428	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2335	 48.28	0	2590747..2591181	+	144	189501335	-	Cphamn1_2429	-	Holliday junction resolvase YqgF
2336	 50.17	0	2591309..2591890	+	193	189501336	-	Cphamn1_2430	-	orotate phosphoribosyltransferase
2337	 49.71	0	2591902..2592768	+	288	189501337	-	Cphamn1_2431	-	Prephenate dehydrogenase
2338	 48.48	0	2592765..2593622	+	285	189501338	-	Cphamn1_2432	-	ATP-NAD/AcoX kinase
2339	 51.06	0	2593649..2595115	+	488	189501339	-	Cphamn1_2433	-	hypothetical protein
2340	 56.51	+1	2595188..2596684	-	498	189501340	-	Cphamn1_2434	-	transposase, IS5 family, putative
2341	 51.78	0	2596845..2597603	+	252	189501341	-	Cphamn1_2435	-	Tetratricopeptide TPR_2 repeat protein
2342	 49.12	0	2597642..2598211	-	189	189501342	-	Cphamn1_2436	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family
2343	 56.08	+1	2598323..2599729	+	468	189501343	-	Cphamn1_2437	-	transposase IS4 family protein
2344	 51.53	0	2600005..2600889	-	294	189501344	-	Cphamn1_2438	-	2-dehydro-3-deoxyphosphooctonate aldolase
2345	 48.07	0	2601309..2602631	+	440	189501345	-	Cphamn1_2439	-	ATPase AAA-2 domain protein
2346	 50.27	0	2602647..2603768	+	373	189501346	-	Cphamn1_2440	-	Beta-N-acetylhexosaminidase
2347	 51.92	0	2603765..2604259	+	164	189501347	-	Cphamn1_2441	-	putative phosphohistidine phosphatase, SixA
2348	 52.64	0	2604434..2605438	-	334	189501348	-	Cphamn1_2442	-	Glycerol-3-phosphate dehydrogenase (NAD(P)(+))
2349	 48.31	0	2605463..2606170	-	235	189501349	-	Cphamn1_2443	-	protein of unknown function DUF205
2350	 50.46	0	2606217..2607203	-	328	189501350	-	Cphamn1_2444	-	phosphoribosylformylglycinamidine cyclo-ligase
2351	 49.44	0	2607298..2608713	-	471	189501351	-	Cphamn1_2445	-	aspartate kinase
2352	 45.14	0	2608806..2609432	+	208	189501352	-	Cphamn1_2446	-	NLP/P60 protein
2353	 46.76	0	2609533..2610396	+	287	189501353	-	Cphamn1_2447	-	ribosomal L11 methyltransferase
2354	 52.14	0	2610414..2611349	+	311	189501354	-	Cphamn1_2448	-	Ppx/GppA phosphatase
2355	 48.23	0	2612010..2613056	-	348	189501355	-	Cphamn1_2450	-	transposase IS4 family protein
2356	 46.67	0	2613152..2613331	-	59	189501356	-	Cphamn1_2451	-	hypothetical protein
2357	 50.62	0	2613533..2614741	-	402	189501357	-	Cphamn1_2452	-	hypothetical protein
2358	 53.56	+1	2614769..2616073	-	434	189501358	-	Cphamn1_2453	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
2359	 54.07	+1	2616103..2616777	-	224	189501359	-	Cphamn1_2454	-	dethiobiotin synthase
2360	 52.80	0	2616962..2617747	-	261	189501360	-	Cphamn1_2455	-	biotin biosynthesis protein BioC
2361	 51.30	0	2617732..2618421	-	229	189501361	-	Cphamn1_2456	-	protein of unknown function DUF452
2362	 55.08	+1	2618648..2619847	-	399	189501362	-	Cphamn1_2457	-	8-amino-7-oxononanoate synthase
2363	 51.96	0	2619844..2620863	-	339	189501363	-	Cphamn1_2458	-	Biotin synthase
2364	 53.74	+1	2620877..2621866	-	329	189501364	-	Cphamn1_2459	-	biotin/acetyl-CoA-carboxylase ligase
2365	 55.29	+1	2622280..2622780	-	166	189501365	-	Cphamn1_2460	-	Rubrerythrin
2366	 54.91	+1	2622842..2624431	-	529	189501366	-	Cphamn1_2461	-	Glutamate synthase (NADPH)
2367	 52.00	0	2624449..2626119	-	556	189501367	-	Cphamn1_2462	-	N-acetylmuramoyl-L-alanine amidase
2368	 51.22	0	2626484..2628898	+	804	189501368	-	Cphamn1_2463	-	DNA topoisomerase I
2369	 51.10	0	2628924..2631062	-	712	189501369	-	Cphamn1_2464	-	ferrous iron transport protein B
2370	 51.58	0	2631066..2631350	-	94	189501370	-	Cphamn1_2465	-	FeoA family protein
2371	 53.82	+1	2631488..2634235	-	915	189501371	-	Cphamn1_2466	-	aconitate hydratase 1
2372	 49.74	0	2634444..2634827	-	127	189501372	-	Cphamn1_2467	-	histidine triad (HIT) protein
2373	 48.04	0	2635161..2635799	+	212	189501373	-	Cphamn1_2468	-	hypothetical protein
48.93	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.