IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides BS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.93 STD DEV: 4.12
Chlorobium phaeobacteroides BS1, complete genome - 1..2736403
2469 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2107	 42.78	-1	2371259..2371639	+	126	189501107	-	Cphamn1_2191	-	dihydroneopterin aldolase
2108	 48.19	0	2371647..2372171	+	174	189501108	-	Cphamn1_2192	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
2109	 45.19	0	2372524..2373678	-	384	189501109	-	Cphamn1_2193	-	arsenite-activated ATPase ArsA
2110	 48.87	0	2373708..2375387	-	559	189501110	-	Cphamn1_2194	-	hypothetical protein
2111	 49.59	0	2375727..2375972	-	81	189501111	-	Cphamn1_2195	-	bacteriochlorophyll C binding protein
2112	 50.48	0	2376109..2376528	-	139	189501112	-	Cphamn1_2196	-	chlorosome envelope protein C
2113	 38.89	-2	2376525..2376650	-	41	189501113	-	Cphamn1_2197	-	hypothetical protein
2114	 45.57	0	2376650..2377867	-	405	189501114	-	Cphamn1_2198	-	arsenite-activated ATPase ArsA
2115	 50.75	0	2378090..2378887	+	265	189501115	-	Cphamn1_2199	-	oxidoreductase FAD/NAD(P)-binding domain protein
2116	 52.74	0	2378919..2379392	+	157	189501116	-	Cphamn1_2200	-	single-strand binding protein
2117	 48.71	0	2379551..2380597	+	348	189501117	-	Cphamn1_2201	-	DNA polymerase III, delta subunit
2118	 51.31	0	2380780..2381775	-	331	189501118	-	Cphamn1_2202	-	NAD-dependent epimerase/dehydratase
2119	 50.12	0	2382023..2383225	+	400	189501119	-	Cphamn1_2203	-	8-amino-7-oxononanoate synthase
2120	 54.29	+1	2383490..2386027	+	845	189501120	-	Cphamn1_2204	-	TonB-dependent receptor
2121	 50.73	0	2386249..2390058	+	1269	189501121	-	Cphamn1_2205	-	magnesium chelatase, H subunit
2122	 44.01	-1	2390104..2390412	+	102	189501122	-	Cphamn1_2206	-	hypothetical protein
2123	 49.35	0	2391116..2394949	+	1277	189501123	-	Cphamn1_2207	-	magnesium chelatase, H subunit
2124	 45.44	0	2394990..2395691	+	233	189501124	-	Cphamn1_2208	-	magnesium protoporphyrin O-methyltransferase
2125	 47.90	0	2395860..2397500	+	546	189501125	-	Cphamn1_2209	-	magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase
2126	 43.10	-1	2397562..2397981	-	139	189501126	-	Cphamn1_2210	-	heat shock protein Hsp20
2127	 52.49	0	2398142..2399044	-	300	189501127	-	Cphamn1_2211	-	hypothetical protein
2128	 52.83	0	2399524..2400795	-	423	189501128	-	Cphamn1_2212	-	membrane protein
2129	 46.58	0	2401125..2402498	+	457	189501129	-	Cphamn1_2213	-	Peptidase M23
2130	 49.06	0	2402934..2403569	+	211	189501130	-	Cphamn1_2214	-	hypothetical protein
2131	 46.90	0	2403668..2403925	-	85	189501131	-	Cphamn1_2215	-	hypothetical protein
2132	 48.42	0	2403926..2404336	-	136	189501132	-	Cphamn1_2216	-	Class I peptide chain release factor
2133	 50.11	0	2404431..2404871	+	146	189501133	-	Cphamn1_2217	-	protein of unknown function DUF937
2134	 49.48	0	2404996..2405949	-	317	189501134	-	Cphamn1_2218	-	WD-40 repeat protein
2135	 41.67	-1	2406170..2406337	-	55	189501135	-	Cphamn1_2219	-	hypothetical protein
2136	 45.45	0	2406471..2406866	-	131	189501136	-	Cphamn1_2220	-	PilT protein domain protein
2137	 46.15	0	2406863..2407096	-	77	189501137	-	Cphamn1_2221	-	prevent-host-death family protein
2138	 52.29	0	2407274..2408428	-	384	189501138	-	Cphamn1_2222	-	glycosyl transferase family 2
2139	 52.01	0	2408852..2409745	-	297	189501139	-	Cphamn1_2223	-	ATP phosphoribosyltransferase
2140	 50.47	0	2409842..2410582	-	246	189501140	-	Cphamn1_2224	-	metallophosphoesterase
2141	 46.78	0	2410607..2411320	-	237	189501141	-	Cphamn1_2225	-	phosphatidate cytidylyltransferase
2142	 45.50	0	2411348..2412358	-	336	189501142	-	Cphamn1_2226	-	bacteriochlorophyll/chlorophyll synthetase
2143	 43.75	-1	2412584..2413591	-	335	189501143	-	Cphamn1_2227	-	UbiA prenyltransferase
2144	 53.42	+1	2413701..2415044	-	447	189501144	-	Cphamn1_2228	-	RNA modification enzyme, MiaB family
2145	 50.77	0	2415537..2415989	+	150	189501145	-	Cphamn1_2229	-	hypothetical protein
2146	 47.56	0	2415952..2416176	+	74	189501146	-	Cphamn1_2230	-	hypothetical protein
2147	 50.82	0	2416214..2416825	-	203	189501147	-	Cphamn1_2231	-	nitrogen-fixing NifU domain protein
2148	 49.92	0	2416809..2418014	-	401	189501148	-	Cphamn1_2232	-	aminotransferase class V
2149	 52.75	0	2418068..2418994	-	308	189501149	-	Cphamn1_2233	-	cysteine synthase A
2150	 50.66	0	2419209..2420114	-	301	189501150	-	Cphamn1_2234	-	transcriptional regulator, XRE family
2151	 48.79	0	2420482..2421801	+	439	189501151	-	Cphamn1_2235	-	protein of unknown function DUF21
2152	 49.06	0	2421988..2422413	+	141	189501152	-	Cphamn1_2236	-	Nucleoside-diphosphate kinase
2153	 49.35	0	2422669..2423592	-	307	189501153	-	Cphamn1_2237	-	Serine-type D-Ala-D-Ala carboxypeptidase
2154	 49.21	0	2423720..2424859	-	379	189501154	-	Cphamn1_2238	-	protein of unknown function UPF0118
2155	 47.12	0	2424856..2425602	-	248	189501155	-	Cphamn1_2239	-	protein of unknown function DUF558
2156	 51.80	0	2425632..2426324	-	230	189501156	-	Cphamn1_2240	-	phosphoribosyltransferase
2157	 53.37	+1	2426351..2427343	-	330	189501157	-	Cphamn1_2241	-	ROK family protein
2158	 49.75	0	2427383..2428180	-	265	189501158	-	Cphamn1_2242	-	acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase
2159	 51.37	0	2428195..2430822	-	875	189501159	-	Cphamn1_2243	-	hypothetical protein
2160	 50.91	0	2431033..2432187	-	384	189501160	-	Cphamn1_2244	-	oxygen-independent coproporphyrinogen III oxidase
2161	 47.11	0	2432225..2432812	-	195	189501161	-	Cphamn1_2245	-	hydrolase, HAD-superfamily, subfamily IIIA
2162	 47.49	0	2432966..2434441	-	491	189501162	-	Cphamn1_2246	-	glycogen/starch synthase, ADP-glucose type
2163	 53.42	+1	2434562..2436274	+	570	189501163	-	Cphamn1_2247	-	hypothetical protein
2164	 55.15	+1	2436360..2436932	+	190	189501164	-	Cphamn1_2248	-	bacteriochlorophyll 4-vinyl reductase
2165	 48.89	0	2437141..2438310	+	389	189501165	-	Cphamn1_2249	-	filamentation induced by cAMP protein Fic
2166	 49.45	0	2438344..2438616	-	90	189501166	-	Cphamn1_2250	-	TfoX domain protein
2167	 53.27	+1	2438613..2438918	-	101	189501167	-	Cphamn1_2251	-	putative mitomycin resistance protein
2168	 44.33	-1	2439526..2439807	-	93	189501168	-	Cphamn1_2253	-	prevent-host-death family protein
2169	 54.84	+1	2439872..2440573	-	233	189501169	-	Cphamn1_2254	-	haloacid dehalogenase, type II
2170	 45.83	0	2440791..2440886	-	31	189501170	-	Cphamn1_2255	-	hypothetical protein
2171	 45.91	0	2441005..2441346	-	113	189501171	-	Cphamn1_2256	-	hypothetical protein
2172	 45.20	0	2441346..2441699	-	117	189501172	-	Cphamn1_2257	-	hypothetical protein
2173	 51.21	0	2441756..2442583	-	275	189501173	-	Cphamn1_2258	-	light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein
2174	 51.78	0	2442625..2444223	-	532	189501174	-	Cphamn1_2259	-	light-independent protochlorophyllide reductase, B subunit
2175	 50.99	0	2444272..2445534	-	420	189501175	-	Cphamn1_2260	-	light-independent protochlorophyllide reductase, N subunit
2176	 46.94	0	2445666..2446025	-	119	189501176	-	Cphamn1_2261	-	protein of unknown function DUF77
2177	 51.55	0	2446006..2447295	-	429	189501177	-	Cphamn1_2262	-	Adenylosuccinate synthase
2178	 44.91	0	2447327..2447905	-	192	189501178	-	Cphamn1_2263	-	GTP-binding protein HSR1-related
2179	 49.35	0	2448070..2449524	+	484	189501179	-	Cphamn1_2264	-	cysteinyl-tRNA synthetase
2180	 50.76	0	2449512..2449643	-	43	189501180	-	Cphamn1_2265	-	hypothetical protein
2181	 49.01	0	2449739..2450854	-	371	189501181	-	Cphamn1_2266	-	Mannose-1-phosphate guanylyltransferase (GDP)
2182	 49.55	0	2451006..2451665	+	219	189501182	-	Cphamn1_2267	-	methyltransferase GidB
2183	 46.51	0	2451765..2452265	-	166	189501183	-	Cphamn1_2268	-	ribosomal protein L17
2184	 44.58	-1	2452311..2453297	-	328	189501184	-	Cphamn1_2269	-	DNA-directed RNA polymerase, alpha subunit
2185	 47.06	0	2453328..2453939	-	203	189501185	-	Cphamn1_2270	-	ribosomal protein S4
2186	 49.48	0	2453983..2454366	-	127	189501186	-	Cphamn1_2271	-	ribosomal protein S11
2187	 48.68	0	2454415..2454792	-	125	189501187	-	Cphamn1_2272	-	ribosomal protein S13
2188	 47.01	0	2454832..2454948	-	38	189501188	-	Cphamn1_2273	-	ribosomal protein L36
2189	 43.84	-1	2455056..2455274	-	72	189501189	-	Cphamn1_2274	-	translation initiation factor IF-1
2190	 49.16	0	2455323..2456099	-	258	189501190	-	Cphamn1_2275	-	methionine aminopeptidase, type I
2191	 49.02	0	2456117..2457442	-	441	189501191	-	Cphamn1_2276	-	preprotein translocase, SecY subunit
2192	 48.27	0	2457461..2458009	-	182	189501192	-	Cphamn1_2277	-	ribosomal protein L15
2193	 45.16	0	2458044..2458229	-	61	189501193	-	Cphamn1_2278	-	ribosomal protein L30
2194	 46.44	0	2458247..2458765	-	172	189501194	-	Cphamn1_2279	-	ribosomal protein S5
2195	 45.00	0	2458787..2459146	-	119	189501195	-	Cphamn1_2280	-	ribosomal protein L18P/L5E
2196	 47.04	0	2459201..2459740	-	179	189501196	-	Cphamn1_2281	-	ribosomal protein L6
2197	 45.71	0	2459769..2460164	-	131	189501197	-	Cphamn1_2282	-	ribosomal protein S8
2198	 48.89	0	2460226..2460495	-	89	189501198	-	Cphamn1_2283	-	ribosomal protein S14
2199	 43.99	-1	2460513..2461103	-	196	189501199	-	Cphamn1_2284	-	ribosomal protein L5
2200	 44.86	0	2461163..2461405	-	80	189501200	-	Cphamn1_2285	-	ribosomal protein L24
2201	 47.70	0	2461528..2461896	-	122	189501201	-	Cphamn1_2286	-	ribosomal protein L14
2202	 45.56	0	2461939..2462208	-	89	189501202	-	Cphamn1_2287	-	ribosomal protein S17
2203	 44.44	-1	2462262..2462468	-	68	189501203	-	Cphamn1_2288	-	ribosomal protein L29
2204	 48.57	0	2462495..2462914	-	139	189501204	-	Cphamn1_2289	-	ribosomal protein L16
2205	 49.67	0	2462966..2463724	-	252	189501205	-	Cphamn1_2290	-	ribosomal protein S3
2206	 48.87	0	2463746..2464099	-	117	189501206	-	Cphamn1_2291	-	ribosomal protein L22
48.93	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.