IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides BS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.93 STD DEV: 4.12
Chlorobium phaeobacteroides BS1, complete genome - 1..2736403
2469 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2059	 48.48	0	2315641..2315871	-	76	189501059	-	Cphamn1_2140	-	addiction module component, TIGR02574 family
2060	 39.39	-2	2316278..2316475	-	65	189501060	-	Cphamn1_2141	-	hypothetical protein
2061	 53.15	+1	2316623..2318020	+	465	189501061	-	Cphamn1_2142	-	hypothetical protein
2062	 38.58	-2	2318250..2318783	-	177	189501062	-	Cphamn1_2143	-	hypothetical protein
2063	 53.22	+1	2318883..2320280	+	465	189501063	-	Cphamn1_2144	-	hypothetical protein
2064	 41.53	-1	2320693..2321607	+	304	189501064	-	Cphamn1_2145	-	NAD-dependent epimerase/dehydratase
2065	 34.31	-2	2321628..2322443	+	271	189501065	-	Cphamn1_2146	-	glycosyl transferase family 2
2066	 39.06	-2	2322445..2323335	-	296	189501066	-	Cphamn1_2147	-	hypothetical protein
2067	 47.74	0	2323881..2324366	+	161	189501067	-	Cphamn1_2149	-	putative transposase
2068	 54.16	+1	2326816..2328606	-	596	189501068	-	Cphamn1_2152	-	hypothetical protein
2069	 56.08	+1	2329239..2330645	-	468	189501069	-	Cphamn1_2153	-	transposase IS4 family protein
2070	 51.08	0	2330933..2331907	+	324	189501070	-	Cphamn1_2154	-	Helix-turn-helix type 11 domain protein
2071	 43.46	-1	2331897..2332439	+	180	189501071	-	Cphamn1_2155	-	DNA-directed DNA polymerase
2072	 45.09	0	2332409..2333284	+	291	189501072	-	Cphamn1_2156	-	hypothetical protein
2073	 56.08	+1	2333372..2334778	+	468	189501073	-	Cphamn1_2157	-	transposase IS4 family protein
2074	 45.55	0	2335040..2336824	+	594	189501074	-	Cphamn1_2158	-	CRISPR-associated helicase Cas3
2075	 43.77	-1	2336845..2338434	+	529	189501075	-	Cphamn1_2159	-	CRISPR-associated protein, Cse1 family
2076	 46.07	0	2338438..2338971	+	177	189501076	-	Cphamn1_2160	-	CRISPR-associated protein, Cse2 family
2077	 46.57	0	2338968..2339594	+	208	189501077	-	Cphamn1_2161	-	CRISPR-associated protein, Cse3 family
2078	 47.93	0	2339607..2340743	+	378	189501078	-	Cphamn1_2162	-	CRISPR-associated protein, Cse4 family
2079	 46.58	0	2340740..2341441	+	233	189501079	-	Cphamn1_2163	-	CRISPR-associated protein Cas5 family
2080	 43.26	-1	2341431..2342306	+	291	189501080	-	Cphamn1_2164	-	CRISPR-associated protein Cas1
2081	 41.82	-1	2342309..2342626	+	105	189501081	-	Cphamn1_2165	-	CRISPR-associated protein Cas2
2082	 44.03	-1	2346068..2347021	-	317	189501082	-	Cphamn1_2166	-	HipA domain protein
2083	 48.77	0	2347025..2347348	-	107	189501083	-	Cphamn1_2167	-	HipA N-terminal domain protein
2084	 44.93	0	2347352..2347558	-	68	189501084	-	Cphamn1_2168	-	transcriptional regulator, XRE family
2085	 41.75	-1	2347573..2347869	-	98	189501085	-	Cphamn1_2169	-	hypothetical protein
2086	 53.33	+1	2348614..2349348	+	244	189501086	-	Cphamn1_2170	-	ABC transporter-related protein
2087	 49.93	0	2349531..2351060	+	509	189501087	-	Cphamn1_2171	-	Radical SAM domain protein
2088	 50.78	0	2351069..2352478	+	469	189501088	-	Cphamn1_2172	-	metal dependent phosphohydrolase
2089	 49.43	0	2352552..2352899	+	115	189501089	-	Cphamn1_2173	-	hypothetical protein
2090	 51.15	0	2352919..2353704	+	261	189501090	-	Cphamn1_2174	-	alpha/beta hydrolase fold
2091	 51.83	0	2353719..2355026	-	435	189501091	-	Cphamn1_2175	-	3-phosphoshikimate 1-carboxyvinyltransferase
2092	 42.93	-1	2355272..2355469	-	65	189501092	-	Cphamn1_2176	-	ribosomal protein S21
2093	 44.08	-1	2355500..2356141	-	213	189501093	-	Cphamn1_2177	-	hypothetical protein
2094	 50.18	0	2356408..2357808	-	466	189501094	-	Cphamn1_2178	-	Cysteine synthase
2095	 45.98	0	2357862..2358035	+	57	189501095	-	Cphamn1_2179	-	hypothetical protein
2096	 52.24	0	2358088..2359203	+	371	189501096	-	Cphamn1_2180	-	alanine racemase
2097	 49.39	0	2359207..2359698	+	163	189501097	-	Cphamn1_2181	-	ComEA-related protein
2098	 52.97	0	2359699..2360574	+	291	189501098	-	Cphamn1_2182	-	hypothetical protein
2099	 50.86	0	2360569..2361618	-	349	189501099	-	Cphamn1_2183	-	aspartate-semialdehyde dehydrogenase
2100	 51.97	0	2361749..2362789	-	346	189501100	-	Cphamn1_2184	-	TIM-barrel protein, nifR3 family
2101	 52.04	0	2362798..2363850	-	350	189501101	-	Cphamn1_2185	-	recA protein
2102	 50.50	0	2364020..2365015	-	331	189501102	-	Cphamn1_2186	-	NAD-dependent epimerase/dehydratase
2103	 53.15	+1	2365291..2366688	-	465	189501103	-	Cphamn1_2187	-	hypothetical protein
2104	 47.29	0	2366909..2368183	+	424	189501104	-	Cphamn1_2188	-	peptidase M16 domain protein
2105	 44.86	0	2368844..2370127	+	427	189501105	-	Cphamn1_2189	-	trigger factor
2106	 50.40	0	2370199..2371077	-	292	189501106	-	Cphamn1_2190	-	nicotinate-nucleotide pyrophosphorylase
2107	 42.78	-1	2371259..2371639	+	126	189501107	-	Cphamn1_2191	-	dihydroneopterin aldolase
2108	 48.19	0	2371647..2372171	+	174	189501108	-	Cphamn1_2192	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
2109	 45.19	0	2372524..2373678	-	384	189501109	-	Cphamn1_2193	-	arsenite-activated ATPase ArsA
2110	 48.87	0	2373708..2375387	-	559	189501110	-	Cphamn1_2194	-	hypothetical protein
2111	 49.59	0	2375727..2375972	-	81	189501111	-	Cphamn1_2195	-	bacteriochlorophyll C binding protein
2112	 50.48	0	2376109..2376528	-	139	189501112	-	Cphamn1_2196	-	chlorosome envelope protein C
2113	 38.89	-2	2376525..2376650	-	41	189501113	-	Cphamn1_2197	-	hypothetical protein
2114	 45.57	0	2376650..2377867	-	405	189501114	-	Cphamn1_2198	-	arsenite-activated ATPase ArsA
2115	 50.75	0	2378090..2378887	+	265	189501115	-	Cphamn1_2199	-	oxidoreductase FAD/NAD(P)-binding domain protein
2116	 52.74	0	2378919..2379392	+	157	189501116	-	Cphamn1_2200	-	single-strand binding protein
2117	 48.71	0	2379551..2380597	+	348	189501117	-	Cphamn1_2201	-	DNA polymerase III, delta subunit
2118	 51.31	0	2380780..2381775	-	331	189501118	-	Cphamn1_2202	-	NAD-dependent epimerase/dehydratase
2119	 50.12	0	2382023..2383225	+	400	189501119	-	Cphamn1_2203	-	8-amino-7-oxononanoate synthase
2120	 54.29	+1	2383490..2386027	+	845	189501120	-	Cphamn1_2204	-	TonB-dependent receptor
2121	 50.73	0	2386249..2390058	+	1269	189501121	-	Cphamn1_2205	-	magnesium chelatase, H subunit
2122	 44.01	-1	2390104..2390412	+	102	189501122	-	Cphamn1_2206	-	hypothetical protein
2123	 49.35	0	2391116..2394949	+	1277	189501123	-	Cphamn1_2207	-	magnesium chelatase, H subunit
2124	 45.44	0	2394990..2395691	+	233	189501124	-	Cphamn1_2208	-	magnesium protoporphyrin O-methyltransferase
2125	 47.90	0	2395860..2397500	+	546	189501125	-	Cphamn1_2209	-	magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase
2126	 43.10	-1	2397562..2397981	-	139	189501126	-	Cphamn1_2210	-	heat shock protein Hsp20
2127	 52.49	0	2398142..2399044	-	300	189501127	-	Cphamn1_2211	-	hypothetical protein
2128	 52.83	0	2399524..2400795	-	423	189501128	-	Cphamn1_2212	-	membrane protein
2129	 46.58	0	2401125..2402498	+	457	189501129	-	Cphamn1_2213	-	Peptidase M23
2130	 49.06	0	2402934..2403569	+	211	189501130	-	Cphamn1_2214	-	hypothetical protein
2131	 46.90	0	2403668..2403925	-	85	189501131	-	Cphamn1_2215	-	hypothetical protein
2132	 48.42	0	2403926..2404336	-	136	189501132	-	Cphamn1_2216	-	Class I peptide chain release factor
2133	 50.11	0	2404431..2404871	+	146	189501133	-	Cphamn1_2217	-	protein of unknown function DUF937
2134	 49.48	0	2404996..2405949	-	317	189501134	-	Cphamn1_2218	-	WD-40 repeat protein
2135	 41.67	-1	2406170..2406337	-	55	189501135	-	Cphamn1_2219	-	hypothetical protein
2136	 45.45	0	2406471..2406866	-	131	189501136	-	Cphamn1_2220	-	PilT protein domain protein
2137	 46.15	0	2406863..2407096	-	77	189501137	-	Cphamn1_2221	-	prevent-host-death family protein
2138	 52.29	0	2407274..2408428	-	384	189501138	-	Cphamn1_2222	-	glycosyl transferase family 2
2139	 52.01	0	2408852..2409745	-	297	189501139	-	Cphamn1_2223	-	ATP phosphoribosyltransferase
2140	 50.47	0	2409842..2410582	-	246	189501140	-	Cphamn1_2224	-	metallophosphoesterase
2141	 46.78	0	2410607..2411320	-	237	189501141	-	Cphamn1_2225	-	phosphatidate cytidylyltransferase
2142	 45.50	0	2411348..2412358	-	336	189501142	-	Cphamn1_2226	-	bacteriochlorophyll/chlorophyll synthetase
2143	 43.75	-1	2412584..2413591	-	335	189501143	-	Cphamn1_2227	-	UbiA prenyltransferase
2144	 53.42	+1	2413701..2415044	-	447	189501144	-	Cphamn1_2228	-	RNA modification enzyme, MiaB family
2145	 50.77	0	2415537..2415989	+	150	189501145	-	Cphamn1_2229	-	hypothetical protein
2146	 47.56	0	2415952..2416176	+	74	189501146	-	Cphamn1_2230	-	hypothetical protein
2147	 50.82	0	2416214..2416825	-	203	189501147	-	Cphamn1_2231	-	nitrogen-fixing NifU domain protein
2148	 49.92	0	2416809..2418014	-	401	189501148	-	Cphamn1_2232	-	aminotransferase class V
2149	 52.75	0	2418068..2418994	-	308	189501149	-	Cphamn1_2233	-	cysteine synthase A
2150	 50.66	0	2419209..2420114	-	301	189501150	-	Cphamn1_2234	-	transcriptional regulator, XRE family
2151	 48.79	0	2420482..2421801	+	439	189501151	-	Cphamn1_2235	-	protein of unknown function DUF21
2152	 49.06	0	2421988..2422413	+	141	189501152	-	Cphamn1_2236	-	Nucleoside-diphosphate kinase
2153	 49.35	0	2422669..2423592	-	307	189501153	-	Cphamn1_2237	-	Serine-type D-Ala-D-Ala carboxypeptidase
2154	 49.21	0	2423720..2424859	-	379	189501154	-	Cphamn1_2238	-	protein of unknown function UPF0118
2155	 47.12	0	2424856..2425602	-	248	189501155	-	Cphamn1_2239	-	protein of unknown function DUF558
2156	 51.80	0	2425632..2426324	-	230	189501156	-	Cphamn1_2240	-	phosphoribosyltransferase
2157	 53.37	+1	2426351..2427343	-	330	189501157	-	Cphamn1_2241	-	ROK family protein
2158	 49.75	0	2427383..2428180	-	265	189501158	-	Cphamn1_2242	-	acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase
48.93	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.