IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides BS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.93 STD DEV: 4.12
Chlorobium phaeobacteroides BS1, complete genome - 1..2736403
2469 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
162	 48.77	0	173499..174314	-	271	189499162	-	Cphamn1_0177	-	Ribonuclease III
163	 52.37	0	174339..175583	-	414	189499163	-	Cphamn1_0178	-	3-oxoacyl-(acyl-carrier-protein) synthase 2
164	 41.77	-1	175632..175868	-	78	189499164	-	Cphamn1_0179	-	acyl carrier protein
165	 50.95	0	175963..176700	-	245	189499165	-	Cphamn1_0180	-	3-oxoacyl-(acyl-carrier-protein) reductase
166	 53.07	+1	176731..177642	-	303	189499166	-	Cphamn1_0181	-	malonyl CoA-acyl carrier protein transacylase
167	 50.46	0	177678..178664	-	328	189499167	-	Cphamn1_0182	-	3-oxoacyl-(acyl-carrier-protein) synthase III
168	 48.05	0	178762..179787	-	341	189499168	-	Cphamn1_0183	-	fatty acid/phospholipid synthesis protein PlsX
169	 52.60	0	179811..180002	-	63	189499169	-	Cphamn1_0184	-	ribosomal protein L32
170	 47.81	0	180035..180559	-	174	189499170	-	Cphamn1_0185	-	protein of unknown function DUF177
171	 40.68	-2	181291..182052	-	253	189499171	-	Cphamn1_0186	-	hypothetical protein
172	 45.73	0	182055..182651	-	198	189499172	-	Cphamn1_0187	-	hypothetical protein
173	 41.07	-1	182767..185094	-	775	189499173	-	Cphamn1_0188	-	N-6 DNA methylase
174	 36.19	-2	187656..187865	-	69	189499174	-	Cphamn1_0190	-	transcriptional regulator, XRE family
175	 41.67	-1	187930..188553	+	207	189499175	-	Cphamn1_0191	-	hypothetical protein
176	 50.33	0	188593..189657	+	354	189499176	-	Cphamn1_0192	-	protein of unknown function DUF306 Meta and HslJ
177	 50.12	0	190041..191720	+	559	189499177	-	Cphamn1_0193	-	2-isopropylmalate synthase
178	 51.20	0	192015..192473	+	152	189499178	-	Cphamn1_0194	-	ferric uptake regulator, Fur family
179	 52.10	0	192470..193348	+	292	189499179	-	Cphamn1_0195	-	periplasmic solute binding protein
180	 51.64	0	193345..194076	+	243	189499180	-	Cphamn1_0196	-	ABC transporter-related protein
181	 48.52	0	194114..194923	+	269	189499181	-	Cphamn1_0197	-	ABC-3 protein
182	 45.14	0	195035..196372	+	445	189499182	-	Cphamn1_0198	-	hypothetical protein
183	 43.56	-1	196515..196739	+	74	189499183	-	Cphamn1_0199	-	hypothetical protein
184	 51.68	0	196786..197172	+	128	189499184	-	Cphamn1_0200	-	CrcB protein
185	 47.95	0	197348..197689	+	113	189499185	-	Cphamn1_0201	-	protein of unknown function DUF190
186	 53.55	+1	197802..199097	-	431	189499186	-	Cphamn1_0202	-	glutamate-1-semialdehyde-2,1-aminomutase
187	 50.76	0	199271..200056	-	261	189499187	-	Cphamn1_0203	-	DNA repair protein RecO
188	 49.59	0	200186..200431	+	81	189499188	-	Cphamn1_0204	-	regulatory protein, FmdB family
189	 49.46	0	200511..201440	-	309	189499189	-	Cphamn1_0205	-	hypothetical protein
190	 52.39	0	201499..202605	+	368	189499190	-	Cphamn1_0206	-	UDP-N-acetylglucosamine 2-epimerase
191	 51.04	0	202667..203389	+	240	189499191	-	Cphamn1_0207	-	hypothetical protein
192	 57.68	+2	203498..204499	+	333	189499192	-	Cphamn1_0208	-	Radical SAM domain protein
193	 43.09	-1	204676..204798	+	40	189499193	-	Cphamn1_0209	-	hypothetical protein
194	 50.37	0	204955..205758	+	267	189499194	-	Cphamn1_0210	-	hypothetical protein
195	 51.43	0	206045..207199	+	384	189499195	-	Cphamn1_0211	-	integrase family protein
196	 41.30	-1	207196..207885	+	229	189499196	-	Cphamn1_0212	-	hypothetical protein
197	 41.01	-1	207888..208421	+	177	189499197	-	Cphamn1_0213	-	hypothetical protein
198	 46.08	0	208476..209330	+	284	189499198	-	Cphamn1_0214	-	hypothetical protein
199	 50.84	0	209445..209741	+	98	189499199	-	Cphamn1_0215	-	putative excisionase
200	 49.09	0	209745..209909	+	54	189499200	-	Cphamn1_0216	-	hypothetical protein
201	 51.54	0	209906..211366	+	486	189499201	-	Cphamn1_0217	-	phage/plasmid primase, P4 family
202	 48.92	0	212696..212881	+	61	189499202	-	Cphamn1_0219	-	hypothetical protein
203	 54.69	+1	212972..213472	+	166	189499203	-	Cphamn1_0220	-	phage terminase, small subunit, , P27 family
204	 54.29	+1	213469..213573	+	34	189499204	-	Cphamn1_0221	-	hypothetical protein
205	 41.40	-1	214319..214504	+	61	189499205	-	Cphamn1_0223	-	hypothetical protein
206	 56.95	+1	216966..217706	+	246	189499206	-	Cphamn1_0226	-	protein of unknown function DUF169
207	 51.83	0	217837..218301	-	154	189499207	-	Cphamn1_0227	-	hypothetical protein
208	 49.66	0	218629..218922	-	97	189499208	-	Cphamn1_0228	-	hypothetical protein
209	 52.23	0	218919..219569	-	216	189499209	-	Cphamn1_0229	-	hypothetical protein
210	 50.62	0	220074..220640	+	188	189499210	-	Cphamn1_0230	-	NLP/P60 protein
211	 42.65	-1	220811..221014	+	67	189499211	-	Cphamn1_0231	-	hypothetical protein
212	 47.55	0	221011..221418	+	135	189499212	-	Cphamn1_0232	-	PilT protein domain protein
213	 44.57	-1	221828..223999	-	723	189499213	-	Cphamn1_0233	-	Radical SAM domain protein
214	 41.81	-1	224284..224625	-	113	189499214	-	Cphamn1_0234	-	hypothetical protein
215	 35.95	-2	224719..224871	-	50	189499215	-	Cphamn1_0235	-	hypothetical protein
216	 54.43	+1	224897..225754	-	285	189499216	-	Cphamn1_0236	-	Peptidase M23
217	 54.48	+1	225762..226565	-	267	189499217	-	Cphamn1_0237	-	metallophosphoesterase
218	 51.10	0	226660..227751	-	363	189499218	-	Cphamn1_0238	-	peptide chain release factor 2
219	 51.16	0	227817..229937	+	706	189499219	-	Cphamn1_0239	-	alpha amylase catalytic region
220	 51.66	0	230044..233361	+	1105	189499220	-	Cphamn1_0240	-	trehalose synthase
221	 50.75	0	233402..236077	+	891	189499221	-	Cphamn1_0241	-	ATPase, P-type (transporting), HAD superfamily, subfamily IC
222	 53.88	+1	236074..236730	+	218	189499222	-	Cphamn1_0242	-	esterase/lipase, putative
223	 45.50	0	236777..236965	-	62	189499223	-	Cphamn1_0243	-	hypothetical protein
224	 41.41	-1	237452..237847	+	131	189499224	-	Cphamn1_0244	-	DNA polymerase beta domain protein region
225	 40.61	-2	237840..238265	+	141	189499225	-	Cphamn1_0245	-	protein of unknown function DUF86
226	 51.09	0	238272..239093	-	273	189499226	-	Cphamn1_0246	-	MazG family protein
227	 53.57	+1	239220..239891	+	223	189499227	-	Cphamn1_0247	-	short-chain dehydrogenase/reductase SDR
228	 56.75	+1	239908..241329	+	473	189499228	-	Cphamn1_0248	-	tRNA modification GTPase TrmE
229	 54.47	+1	241682..243214	+	510	189499229	-	Cphamn1_0249	-	hypothetical protein
230	 50.27	0	243267..243638	+	123	189499230	-	Cphamn1_0250	-	holo-acyl-carrier-protein synthase
231	 47.69	0	243728..243922	+	64	189499231	-	Cphamn1_0251	-	hypothetical protein
232	 46.78	0	243996..244508	-	170	189499232	-	Cphamn1_0252	-	rare lipoprotein A
233	 48.25	0	244891..246090	+	399	189499233	-	Cphamn1_0253	-	arsenite-activated ATPase ArsA
234	 43.75	-1	246231..246518	+	95	189499234	-	Cphamn1_0254	-	hypothetical protein
235	 44.44	-1	246538..246771	-	77	189499235	-	Cphamn1_0255	-	hypothetical protein
236	 48.68	0	246928..248256	-	442	189499236	-	Cphamn1_0256	-	pentapeptide repeat protein
237	 49.76	0	248328..249149	-	273	189499237	-	Cphamn1_0257	-	protein of unknown function DUF6 transmembrane
238	 50.28	0	249364..250065	+	233	189499238	-	Cphamn1_0258	-	NAD-dependent epimerase/dehydratase
239	 50.99	0	250181..253198	-	1005	189499239	-	Cphamn1_0259	-	Radical SAM domain protein
240	 45.49	0	253313..253567	-	84	189499240	-	Cphamn1_0260	-	bacteriochlorophyll C binding protein
241	 51.03	0	253671..255077	-	468	189499241	-	Cphamn1_0261	-	Na+/solute symporter
242	 50.77	0	255099..256262	-	387	189499242	-	Cphamn1_0262	-	hypothetical protein
243	 46.41	0	256413..257345	-	310	189499243	-	Cphamn1_0263	-	Nucleotidyl transferase
244	 44.08	-1	257342..258346	-	334	189499244	-	Cphamn1_0264	-	aminoglycoside phosphotransferase
245	 44.59	-1	258474..258704	-	76	189499245	-	Cphamn1_0265	-	chlorosome envelope protein B
246	 37.61	-2	258888..259004	-	38	189499246	-	Cphamn1_0266	-	hypothetical protein
247	 46.24	0	259009..260418	-	469	189499247	-	Cphamn1_0267	-	Radical SAM domain protein
248	 44.73	-1	260797..261270	+	157	189499248	-	Cphamn1_0268	-	2-vinyl bacteriochlorophyllide hydratase
249	 46.85	0	261306..261527	+	73	189499249	-	Cphamn1_0269	-	hypothetical protein
250	 50.16	0	261683..262900	+	405	189499250	-	Cphamn1_0270	-	hypothetical protein
251	 45.05	0	263018..263239	-	73	189499251	-	Cphamn1_0271	-	hypothetical protein
252	 46.64	0	263451..264983	+	510	189499252	-	Cphamn1_0272	-	hypothetical protein
253	 39.90	-2	264998..265621	-	207	189499253	-	Cphamn1_0273	-	hypothetical protein
254	 46.98	0	265858..266634	+	258	189499254	-	Cphamn1_0274	-	short-chain dehydrogenase/reductase SDR
255	 47.35	0	266746..267387	+	213	189499255	-	Cphamn1_0275	-	Isoprenylcysteine carboxyl methyltransferase
256	 46.30	0	267461..268339	+	292	189499256	-	Cphamn1_0276	-	alpha/beta hydrolase fold
257	 42.11	-1	268336..268677	+	113	189499257	-	Cphamn1_0277	-	protein of unknown function DUF156
258	 52.49	0	268720..270045	+	441	189499258	-	Cphamn1_0278	-	outer membrane efflux protein
259	 50.13	0	270075..270455	+	126	189499259	-	Cphamn1_0279	-	hypothetical protein
260	 51.17	0	270469..273681	+	1070	189499260	-	Cphamn1_0280	-	acriflavin resistance protein
261	 49.67	0	273712..274017	+	101	189499261	-	Cphamn1_0281	-	hypothetical protein
48.93	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.