IslandPath Analysis: Chlorobium phaeobacteroides BS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.93   STD DEV: 4.12
Chlorobium phaeobacteroides BS1, complete genome - 1..2736403
2469 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2007	 46.62	0	2254433..2255230	-	265	189501007	-	Cphamn1_2087	-	Cobyrinic acid ac-diamide synthase
2008	 48.83	0	2255410..2256009	+	199	189501008	-	Cphamn1_2088	-	DNA-3-methyladenine glycosylase
2009	 51.63	0	2256082..2257464	+	460	189501009	-	Cphamn1_2089	-	magnesium transporter
2010	 52.87	0	2257529..2259202	+	557	189501010	-	Cphamn1_2090	-	Electron-transferring-flavoprotein dehydrogenase
2011	 51.94	0	2259204..2260283	+	359	189501011	-	Cphamn1_2091	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
2012	 52.00	0	2260720..2261394	+	224	189501012	-	Cphamn1_2092	-	phospholipase/Carboxylesterase
2013	 51.28	0	2261476..2265159	+	1227	189501013	-	Cphamn1_2093	-	methionine synthase
2014	 49.15	0	2265222..2265398	-	58	189501014	-	Cphamn1_2094	-	hypothetical protein
2015	 51.56	0	2265648..2267348	-	566	189501015	-	Cphamn1_2095	-	Peptidoglycan-binding domain 1 protein
2016	 47.72	0	2267588..2268268	-	226	189501016	-	Cphamn1_2096	-	hypothetical protein
2017	 46.89	0	2268668..2269633	+	321	189501017	-	Cphamn1_2097	-	hypothetical protein
2018	 48.67	0	2269735..2270412	-	225	189501018	-	Cphamn1_2098	-	protein of unknown function DUF975
2019	 49.13	0	2270499..2271074	+	191	189501019	-	Cphamn1_2099	-	Rhodanese domain protein
2020	 52.49	0	2271280..2271942	-	220	189501020	-	Cphamn1_2100	-	hypothetical protein
2021	 50.89	0	2272096..2272995	+	299	189501021	-	Cphamn1_2101	-	MscS Mechanosensitive ion channel
2022	 54.01	+1	2273180..2275186	+	668	189501022	-	Cphamn1_2102	-	transketolase
2023	 53.96	+1	2275208..2276002	+	264	189501023	-	Cphamn1_2103	-	6-phosphogluconolactonase
2024	 48.92	0	2276031..2277461	-	476	189501024	-	Cphamn1_2104	-	glucose-6-phosphate 1-dehydrogenase
2025	 49.95	0	2277458..2278372	-	304	189501025	-	Cphamn1_2105	-	6-phosphogluconate dehydrogenase, decarboxylating
2026	 46.91	0	2278383..2281364	-	993	189501026	-	Cphamn1_2106	-	multi-sensor hybrid histidine kinase
2027	 49.75	0	2281380..2282585	-	401	189501027	-	Cphamn1_2107	-	domain of unknown function DUF1745
2028	 48.29	0	2282835..2283977	-	380	189501028	-	Cphamn1_2108	-	Ion transport 2 domain protein
2029	 47.74	0	2284149..2284835	-	228	189501029	-	Cphamn1_2109	-	protein of unknown function DUF541
2030	 56.08	+1	2284894..2286300	+	468	189501030	-	Cphamn1_2110	-	transposase IS4 family protein
2031	 46.24	0	2287112..2287909	+	265	189501031	-	Cphamn1_2111	-	Enoyl-CoA hydratase/isomerase
2032	 46.46	0	2288005..2289444	+	479	189501032	-	Cphamn1_2112	-	hypothetical protein
2033	 47.74	0	2289432..2290493	+	353	189501033	-	Cphamn1_2113	-	hypothetical protein
2034	 58.33	+2	2290628..2290783	+	51	189501034	-	Cphamn1_2114	-	hypothetical protein
2035	 50.44	0	2291296..2292435	-	379	189501035	-	Cphamn1_2115	-	glycosyl transferase group 1
2036	 52.38	0	2292633..2293094	-	153	189501036	-	Cphamn1_2116	-	YbaK/prolyl-tRNA synthetase associated region
2037	 48.86	0	2293328..2293939	-	203	189501037	-	Cphamn1_2117	-	surface antigen msp4 family protein
2038	 52.38	0	2294239..2294847	-	202	189501038	-	Cphamn1_2118	-	outer surface protein, putative
2039	 55.01	+1	2295071..2295868	-	265	189501039	-	Cphamn1_2119	-	Patatin
2040	 34.11	-2	2295865..2295993	-	42	189501040	-	Cphamn1_2120	-	hypothetical protein
2041	 50.35	0	2296475..2297884	-	469	189501041	-	Cphamn1_2121	-	Aldehyde Dehydrogenase
2042	 49.71	0	2299058..2301487	+	809	189501042	-	Cphamn1_2123	-	peptidase S16 lon domain protein
2043	 53.10	+1	2301487..2302341	+	284	189501043	-	Cphamn1_2124	-	hypothetical protein
2044	 54.10	+1	2302436..2303239	-	267	189501044	-	Cphamn1_2125	-	tRNA/rRNA methyltransferase (SpoU)
2045	 49.81	0	2303236..2304036	-	266	189501045	-	Cphamn1_2126	-	hypothetical protein
2046	 51.76	0	2304158..2305405	+	415	189501046	-	Cphamn1_2127	-	peptidase U32
2047	 47.01	0	2305490..2305723	-	77	189501047	-	Cphamn1_2128	-	hypothetical protein
2048	 48.06	0	2305837..2306916	+	359	189501048	-	Cphamn1_2129	-	hydrogenase/sulfur reductase, beta subunit
2049	 48.61	0	2306970..2307794	+	274	189501049	-	Cphamn1_2130	-	oxidoreductase FAD/NAD(P)-binding domain protein
2050	 51.37	0	2307805..2308569	+	254	189501050	-	Cphamn1_2131	-	NADH ubiquinone oxidoreductase 20 kDa subunit
2051	 51.02	0	2308556..2309833	+	425	189501051	-	Cphamn1_2132	-	nickel-dependent hydrogenase large subunit
2052	 48.52	0	2310002..2310877	-	291	189501052	-	Cphamn1_2133	-	hypothetical protein
2053	 49.37	0	2310916..2311389	-	157	189501053	-	Cphamn1_2134	-	peptidylprolyl isomerase FKBP-type
2054	 47.51	0	2311622..2312305	+	227	189501054	-	Cphamn1_2135	-	surface antigen msp4 family protein
2055	 48.38	0	2312377..2313426	-	349	189501055	-	Cphamn1_2136	-	MscS Mechanosensitive ion channel
2056	 49.71	0	2313446..2314636	-	396	189501056	-	Cphamn1_2137	-	amine oxidase
2057	 54.51	+1	2314731..2315273	-	180	189501057	-	Cphamn1_2138	-	transferase hexapeptide repeat containing protein
2058	 43.14	-1	2315339..2315644	-	101	189501058	-	Cphamn1_2139	-	plasmid stabilization system
2059	 48.48	0	2315641..2315871	-	76	189501059	-	Cphamn1_2140	-	addiction module component, TIGR02574 family
2060	 39.39	-2	2316278..2316475	-	65	189501060	-	Cphamn1_2141	-	hypothetical protein
2061	 53.15	+1	2316623..2318020	+	465	189501061	-	Cphamn1_2142	-	hypothetical protein
2062	 38.58	-2	2318250..2318783	-	177	189501062	-	Cphamn1_2143	-	hypothetical protein
2063	 53.22	+1	2318883..2320280	+	465	189501063	-	Cphamn1_2144	-	hypothetical protein
2064	 41.53	-1	2320693..2321607	+	304	189501064	-	Cphamn1_2145	-	NAD-dependent epimerase/dehydratase
2065	 34.31	-2	2321628..2322443	+	271	189501065	-	Cphamn1_2146	-	glycosyl transferase family 2
2066	 39.06	-2	2322445..2323335	-	296	189501066	-	Cphamn1_2147	-	hypothetical protein
2067	 47.74	0	2323881..2324366	+	161	189501067	-	Cphamn1_2149	-	putative transposase
2068	 54.16	+1	2326816..2328606	-	596	189501068	-	Cphamn1_2152	-	hypothetical protein
2069	 56.08	+1	2329239..2330645	-	468	189501069	-	Cphamn1_2153	-	transposase IS4 family protein
2070	 51.08	0	2330933..2331907	+	324	189501070	-	Cphamn1_2154	-	Helix-turn-helix type 11 domain protein
2071	 43.46	-1	2331897..2332439	+	180	189501071	-	Cphamn1_2155	-	DNA-directed DNA polymerase
2072	 45.09	0	2332409..2333284	+	291	189501072	-	Cphamn1_2156	-	hypothetical protein
2073	 56.08	+1	2333372..2334778	+	468	189501073	-	Cphamn1_2157	-	transposase IS4 family protein
2074	 45.55	0	2335040..2336824	+	594	189501074	-	Cphamn1_2158	-	CRISPR-associated helicase Cas3
2075	 43.77	-1	2336845..2338434	+	529	189501075	-	Cphamn1_2159	-	CRISPR-associated protein, Cse1 family
2076	 46.07	0	2338438..2338971	+	177	189501076	-	Cphamn1_2160	-	CRISPR-associated protein, Cse2 family
2077	 46.57	0	2338968..2339594	+	208	189501077	-	Cphamn1_2161	-	CRISPR-associated protein, Cse3 family
2078	 47.93	0	2339607..2340743	+	378	189501078	-	Cphamn1_2162	-	CRISPR-associated protein, Cse4 family
2079	 46.58	0	2340740..2341441	+	233	189501079	-	Cphamn1_2163	-	CRISPR-associated protein Cas5 family
2080	 43.26	-1	2341431..2342306	+	291	189501080	-	Cphamn1_2164	-	CRISPR-associated protein Cas1
2081	 41.82	-1	2342309..2342626	+	105	189501081	-	Cphamn1_2165	-	CRISPR-associated protein Cas2
2082	 44.03	-1	2346068..2347021	-	317	189501082	-	Cphamn1_2166	-	HipA domain protein
2083	 48.77	0	2347025..2347348	-	107	189501083	-	Cphamn1_2167	-	HipA N-terminal domain protein
2084	 44.93	0	2347352..2347558	-	68	189501084	-	Cphamn1_2168	-	transcriptional regulator, XRE family
2085	 41.75	-1	2347573..2347869	-	98	189501085	-	Cphamn1_2169	-	hypothetical protein
2086	 53.33	+1	2348614..2349348	+	244	189501086	-	Cphamn1_2170	-	ABC transporter-related protein
2087	 49.93	0	2349531..2351060	+	509	189501087	-	Cphamn1_2171	-	Radical SAM domain protein
2088	 50.78	0	2351069..2352478	+	469	189501088	-	Cphamn1_2172	-	metal dependent phosphohydrolase
2089	 49.43	0	2352552..2352899	+	115	189501089	-	Cphamn1_2173	-	hypothetical protein
2090	 51.15	0	2352919..2353704	+	261	189501090	-	Cphamn1_2174	-	alpha/beta hydrolase fold
2091	 51.83	0	2353719..2355026	-	435	189501091	-	Cphamn1_2175	-	3-phosphoshikimate 1-carboxyvinyltransferase
2092	 42.93	-1	2355272..2355469	-	65	189501092	-	Cphamn1_2176	-	ribosomal protein S21
2093	 44.08	-1	2355500..2356141	-	213	189501093	-	Cphamn1_2177	-	hypothetical protein
2094	 50.18	0	2356408..2357808	-	466	189501094	-	Cphamn1_2178	-	Cysteine synthase
2095	 45.98	0	2357862..2358035	+	57	189501095	-	Cphamn1_2179	-	hypothetical protein
2096	 52.24	0	2358088..2359203	+	371	189501096	-	Cphamn1_2180	-	alanine racemase
2097	 49.39	0	2359207..2359698	+	163	189501097	-	Cphamn1_2181	-	ComEA-related protein
2098	 52.97	0	2359699..2360574	+	291	189501098	-	Cphamn1_2182	-	hypothetical protein
2099	 50.86	0	2360569..2361618	-	349	189501099	-	Cphamn1_2183	-	aspartate-semialdehyde dehydrogenase
2100	 51.97	0	2361749..2362789	-	346	189501100	-	Cphamn1_2184	-	TIM-barrel protein, nifR3 family
2101	 52.04	0	2362798..2363850	-	350	189501101	-	Cphamn1_2185	-	recA protein
2102	 50.50	0	2364020..2365015	-	331	189501102	-	Cphamn1_2186	-	NAD-dependent epimerase/dehydratase
2103	 53.15	+1	2365291..2366688	-	465	189501103	-	Cphamn1_2187	-	hypothetical protein
2104	 47.29	0	2366909..2368183	+	424	189501104	-	Cphamn1_2188	-	peptidase M16 domain protein
2105	 44.86	0	2368844..2370127	+	427	189501105	-	Cphamn1_2189	-	trigger factor
2106	 50.40	0	2370199..2371077	-	292	189501106	-	Cphamn1_2190	-	nicotinate-nucleotide pyrophosphorylase
48.93	MEAN

4.12	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.