IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides BS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.93 STD DEV: 4.12
Chlorobium phaeobacteroides BS1, complete genome - 1..2736403
2469 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1920	 44.91	0	2148342..2149568	-	408	189500920	-	Cphamn1_1998	-	rod shape-determining protein RodA
1921	 47.77	0	2150102..2151022	+	306	189500921	-	Cphamn1_1999	-	GTP-binding protein Era
1922	 45.83	0	2151684..2153459	-	591	189500922	-	Cphamn1_2000	-	RNA binding S1 domain protein
1923	 50.55	0	2154432..2155523	+	363	189500923	-	Cphamn1_2002	-	GTP-binding protein YchF
1924	 52.84	0	2155850..2156659	-	269	189500924	-	Cphamn1_2003	-	glutamate racemase
1925	 49.41	0	2157173..2157682	-	169	189500925	-	Cphamn1_2004	-	hypothetical protein
1926	 48.92	0	2157777..2157962	+	61	189500926	-	Cphamn1_2005	-	hypothetical protein
1927	 49.09	0	2157969..2158793	-	274	189500927	-	Cphamn1_2006	-	short-chain dehydrogenase/reductase SDR
1928	 51.13	0	2158973..2160259	-	428	189500928	-	Cphamn1_2007	-	Ribulose-bisphosphate carboxylase
1929	 50.91	0	2160324..2161205	-	293	189500929	-	Cphamn1_2008	-	deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase
1930	 51.32	0	2161257..2163374	-	705	189500930	-	Cphamn1_2009	-	short-chain dehydrogenase/reductase SDR
1931	 46.71	0	2164203..2164658	+	151	189500931	-	Cphamn1_2010	-	regulatory protein RecX
1932	 50.14	0	2164827..2165546	-	239	189500932	-	Cphamn1_2011	-	uridylate kinase
1933	 49.13	0	2165611..2166477	-	288	189500933	-	Cphamn1_2012	-	translation elongation factor Ts
1934	 49.81	0	2166513..2167295	-	260	189500934	-	Cphamn1_2013	-	ribosomal protein S2
1935	 50.51	0	2167433..2167828	-	131	189500935	-	Cphamn1_2014	-	ribosomal protein S9
1936	 47.24	0	2167837..2168289	-	150	189500936	-	Cphamn1_2015	-	ribosomal protein L13
1937	 49.62	0	2168501..2169808	+	435	189500937	-	Cphamn1_2016	-	small GTP-binding protein
1938	 51.85	0	2169874..2170980	+	368	189500938	-	Cphamn1_2017	-	protein of unknown function DUF59
1939	 51.34	0	2171062..2171322	-	86	189500939	-	Cphamn1_2018	-	nitrogen-fixing NifU domain protein
1940	 51.76	0	2171421..2173715	-	764	189500940	-	Cphamn1_2019	-	cell divisionFtsK/SpoIIIE
1941	 50.74	0	2174157..2175368	-	403	189500941	-	Cphamn1_2020	-	glycine cleavage system T protein
1942	 46.67	0	2175750..2176004	+	84	189500942	-	Cphamn1_2021	-	hypothetical protein
1943	 49.25	0	2176050..2176514	-	154	189500943	-	Cphamn1_2022	-	hypothetical protein
1944	 46.99	0	2176697..2177260	-	187	189500944	-	Cphamn1_2023	-	TPR repeat-containing protein
1945	 46.35	0	2177491..2177682	-	63	189500945	-	Cphamn1_2024	-	hypothetical protein
1946	 47.57	0	2177701..2178339	-	212	189500946	-	Cphamn1_2025	-	protein of unknown function DUF477
1947	 54.02	+1	2178366..2179148	-	260	189500947	-	Cphamn1_2026	-	protein of unknown function DUF477
1948	 48.47	0	2179151..2179738	-	195	189500948	-	Cphamn1_2027	-	LemA family protein
1949	 54.35	+1	2179933..2180760	+	275	189500949	-	Cphamn1_2028	-	hypothetical protein
1950	 48.45	0	2180782..2182977	-	731	189500950	-	Cphamn1_2029	-	(p)ppGpp synthetase I, SpoT/RelA
1951	 51.81	0	2183588..2185660	-	690	189500951	-	Cphamn1_2030	-	excinuclease ABC, B subunit
1952	 49.43	0	2186242..2189199	+	985	189500952	-	Cphamn1_2031	-	peptidase M16 domain protein
1953	 48.46	0	2189321..2190232	+	303	189500953	-	Cphamn1_2032	-	band 7 protein
1954	 50.23	0	2190425..2191507	+	360	189500954	-	Cphamn1_2033	-	permease YjgP/YjgQ family protein
1955	 53.78	+1	2191511..2192317	+	268	189500955	-	Cphamn1_2034	-	protein of unknown function DUF62
1956	 50.11	0	2192340..2193239	-	299	189500956	-	Cphamn1_2035	-	RNA polymerase, sigma 70 subunit, RpoD family
1957	 51.51	0	2193396..2196152	-	918	189500957	-	Cphamn1_2036	-	valyl-tRNA synthetase
1958	 49.34	0	2196196..2196882	-	228	189500958	-	Cphamn1_2037	-	ATP-dependent Clp protease, proteolytic subunit ClpP
1959	 50.83	0	2197303..2197965	+	220	189500959	-	Cphamn1_2038	-	thymidylate synthase, flavin-dependent
1960	 52.63	0	2197914..2198789	-	291	189500960	-	Cphamn1_2039	-	acetyl-CoA carboxylase, carboxyl transferase, beta subunit
1961	 51.68	0	2199083..2201812	+	909	189500961	-	Cphamn1_2040	-	surface antigen (D15)
1962	 51.01	0	2202113..2202904	+	263	189500962	-	Cphamn1_2041	-	stationary-phase survival protein SurE
1963	 50.41	0	2202908..2204599	+	563	189500963	-	Cphamn1_2042	-	hypothetical protein
1964	 54.04	+1	2204618..2206723	-	701	189500964	-	Cphamn1_2043	-	thiol-disulfide interchange protein-like protein
1965	 52.20	0	2206849..2207643	-	264	189500965	-	Cphamn1_2044	-	cytochrome c assembly protein
1966	 51.75	0	2207850..2209076	-	408	189500966	-	Cphamn1_2045	-	hypothetical protein
1967	 48.87	0	2209069..2209422	-	117	189500967	-	Cphamn1_2046	-	transcriptional regulator, fis family
1968	 47.56	0	2209810..2210547	-	245	189500968	-	Cphamn1_2047	-	hypothetical protein
1969	 50.18	0	2210554..2211117	-	187	189500969	-	Cphamn1_2048	-	glutamine amidotransferase of anthranilate synthase
1970	 51.36	0	2211293..2212546	-	417	189500970	-	Cphamn1_2049	-	hypothetical protein
1971	 48.67	0	2212685..2213584	-	299	189500971	-	Cphamn1_2050	-	diacylglycerol kinase catalytic region
1972	 48.41	0	2213581..2214051	-	156	189500972	-	Cphamn1_2051	-	protein tyrosine phosphatase
1973	 44.22	-1	2214369..2215580	+	403	189500973	-	Cphamn1_2052	-	hypothetical protein
1974	 46.72	0	2215722..2216954	+	410	189500974	-	Cphamn1_2053	-	regulatory protein LuxR
1975	 45.67	0	2217136..2218359	+	407	189500975	-	Cphamn1_2054	-	hypothetical protein
1976	 46.09	0	2218417..2219655	+	412	189500976	-	Cphamn1_2055	-	hypothetical protein
1977	 53.13	+1	2219728..2221101	-	457	189500977	-	Cphamn1_2056	-	Aldehyde Dehydrogenase
1978	 47.09	0	2221134..2221322	-	62	189500978	-	Cphamn1_2057	-	hypothetical protein
1979	 51.35	0	2221341..2222300	-	319	189500979	-	Cphamn1_2058	-	ribosome small subunit-dependent GTPase A
1980	 52.18	0	2222325..2224484	-	719	189500980	-	Cphamn1_2059	-	ATP-dependent DNA helicase RecG
1981	 46.49	0	2224595..2224822	+	75	189500981	-	Cphamn1_2060	-	ribosomal protein L31
1982	 48.48	0	2224868..2225428	+	186	189500982	-	Cphamn1_2061	-	ribosome recycling factor
1983	 50.59	0	2225415..2226683	-	422	189500983	-	Cphamn1_2062	-	chlorophyllide reductase subunit Y
1984	 48.19	0	2226683..2227180	-	165	189500984	-	Cphamn1_2063	-	hypothetical protein
1985	 50.17	0	2227320..2228531	+	403	189500985	-	Cphamn1_2064	-	exodeoxyribonuclease VII, large subunit
1986	 49.93	0	2228506..2229252	-	248	189500986	-	Cphamn1_2065	-	3-deoxy-D-manno-octulosonate cytidylyltransferase
1987	 48.69	0	2229310..2229615	-	101	189500987	-	Cphamn1_2066	-	protein of unknown function DUF167
1988	 44.79	-1	2229628..2229915	-	95	189500988	-	Cphamn1_2067	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
1989	 50.55	0	2230071..2231423	-	450	189500989	-	Cphamn1_2068	-	citrate synthase I
1990	 50.70	0	2231616..2233124	-	502	189500990	-	Cphamn1_2069	-	amino acid carrier protein
1991	 51.00	0	2233478..2234530	-	350	189500991	-	Cphamn1_2070	-	OmpA/MotB domain protein
1992	 51.48	0	2234559..2235302	-	247	189500992	-	Cphamn1_2071	-	hypothetical protein
1993	 44.50	-1	2238259..2238903	+	214	189500993	-	Cphamn1_2073	-	Tetratricopeptide TPR_2 repeat protein
1994	 50.00	0	2238983..2240398	+	471	189500994	-	Cphamn1_2074	-	isochorismate synthase
1995	 52.35	0	2240512..2242257	+	581	189500995	-	Cphamn1_2075	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
1996	 53.28	+1	2242254..2243060	+	268	189500996	-	Cphamn1_2076	-	alpha/beta hydrolase fold
1997	 54.14	+1	2243096..2243917	+	273	189500997	-	Cphamn1_2077	-	naphthoate synthase
1998	 56.83	+1	2243914..2245011	+	365	189500998	-	Cphamn1_2078	-	Mandelate racemase/muconate lactonizing protein
1999	 55.62	+1	2244999..2246447	+	482	189500999	-	Cphamn1_2079	-	O-succinylbenzoate-CoA ligase
2000	 46.99	0	2246626..2247987	+	453	189501000	-	Cphamn1_2080	-	protein of unknown function DUF849
2001	 51.52	0	2248162..2250102	+	646	189501001	-	Cphamn1_2081	-	Glutathione synthase
2002	 56.92	+1	2250130..2251206	-	358	189501002	-	Cphamn1_2082	-	NADH:flavin oxidoreductase/NADH oxidase
2003	 51.90	0	2251469..2251969	-	166	189501003	-	Cphamn1_2083	-	hypothetical protein
2004	 52.88	0	2251971..2252717	-	248	189501004	-	Cphamn1_2084	-	Dihydrodipicolinate reductase
2005	 51.36	0	2252814..2253401	-	195	189501005	-	Cphamn1_2085	-	hypothetical protein
2006	 47.55	0	2253521..2254399	-	292	189501006	-	Cphamn1_2086	-	parB-like partition protein
2007	 46.62	0	2254433..2255230	-	265	189501007	-	Cphamn1_2087	-	Cobyrinic acid ac-diamide synthase
2008	 48.83	0	2255410..2256009	+	199	189501008	-	Cphamn1_2088	-	DNA-3-methyladenine glycosylase
2009	 51.63	0	2256082..2257464	+	460	189501009	-	Cphamn1_2089	-	magnesium transporter
2010	 52.87	0	2257529..2259202	+	557	189501010	-	Cphamn1_2090	-	Electron-transferring-flavoprotein dehydrogenase
2011	 51.94	0	2259204..2260283	+	359	189501011	-	Cphamn1_2091	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
2012	 52.00	0	2260720..2261394	+	224	189501012	-	Cphamn1_2092	-	phospholipase/Carboxylesterase
2013	 51.28	0	2261476..2265159	+	1227	189501013	-	Cphamn1_2093	-	methionine synthase
2014	 49.15	0	2265222..2265398	-	58	189501014	-	Cphamn1_2094	-	hypothetical protein
2015	 51.56	0	2265648..2267348	-	566	189501015	-	Cphamn1_2095	-	Peptidoglycan-binding domain 1 protein
2016	 47.72	0	2267588..2268268	-	226	189501016	-	Cphamn1_2096	-	hypothetical protein
2017	 46.89	0	2268668..2269633	+	321	189501017	-	Cphamn1_2097	-	hypothetical protein
2018	 48.67	0	2269735..2270412	-	225	189501018	-	Cphamn1_2098	-	protein of unknown function DUF975
2019	 49.13	0	2270499..2271074	+	191	189501019	-	Cphamn1_2099	-	Rhodanese domain protein
48.93	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.