IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides BS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.93 STD DEV: 4.12
Chlorobium phaeobacteroides BS1, complete genome - 1..2736403
2469 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1810	 53.57	+1	2042245..2043099	+	284	189500810	-	Cphamn1_1882	-	apurinic endonuclease Apn1
1811	 52.69	0	2043613..2044485	-	290	189500811	-	Cphamn1_1883	-	protein of unknown function DUF214
1812	 48.17	0	2045170..2045742	-	190	189500812	-	Cphamn1_1884	-	hypothetical protein
1813	 49.24	0	2045904..2047412	+	502	189500813	-	Cphamn1_1885	-	amidophosphoribosyltransferase
1814	 47.75	0	2047515..2047958	-	147	189500814	-	Cphamn1_1886	-	transcriptional regulator, TraR/DksA family
1815	 50.97	0	2048400..2051642	-	1080	189500815	-	Cphamn1_1887	-	isoleucyl-tRNA synthetase
1816	 47.03	0	2051961..2052179	-	72	189500816	-	Cphamn1_1888	-	hypothetical protein
1817	 52.89	0	2052887..2053924	-	345	189500817	-	Cphamn1_1889	-	dTDP-glucose 4,6-dehydratase
1818	 36.96	-2	2054151..2054288	-	45	189500818	-	Cphamn1_1890	-	hypothetical protein
1819	 54.59	+1	2055475..2056335	-	286	189500819	-	Cphamn1_1891	-	dTDP-4-dehydrorhamnose reductase
1820	 49.34	0	2056712..2057317	-	201	189500820	-	Cphamn1_1892	-	dTDP-4-dehydrorhamnose 3,5-epimerase
1821	 39.78	-2	2057369..2057740	-	123	189500821	-	Cphamn1_1893	-	hypothetical protein
1822	 52.45	0	2057982..2058860	-	292	189500822	-	Cphamn1_1894	-	glucose-1-phosphate thymidylyltransferase
1823	 46.54	0	2059377..2059868	+	163	189500823	-	Cphamn1_1895	-	hypothetical protein
1824	 47.97	0	2059946..2060635	-	229	189500824	-	Cphamn1_1896	-	hypothetical protein
1825	 47.70	0	2060982..2061155	+	57	189500825	-	Cphamn1_1897	-	hypothetical protein
1826	 53.01	0	2061387..2062184	-	265	189500826	-	Cphamn1_1898	-	3'(2'),5'-bisphosphate nucleotidase
1827	 57.10	+1	2063287..2065137	-	616	189500827	-	Cphamn1_1899	-	glucosamine/fructose-6-phosphate aminotransferase, isomerizing
1828	 56.53	+1	2065664..2067094	-	476	189500828	-	Cphamn1_1900	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
1829	 47.36	0	2067673..2068863	+	396	189500829	-	Cphamn1_1901	-	AAA ATPase
1830	 56.12	+1	2068992..2070413	-	473	189500830	-	Cphamn1_1902	-	Phosphomannomutase
1831	 53.22	+1	2070587..2070757	-	56	189500831	-	Cphamn1_1903	-	hypothetical protein
1832	 42.31	-1	2071375..2071764	-	129	189500832	-	Cphamn1_1904	-	PilT protein domain protein
1833	 38.60	-2	2071754..2071981	-	75	189500833	-	Cphamn1_1905	-	hypothetical protein
1834	 45.05	0	2073193..2073465	+	90	189500834	-	Cphamn1_1907	-	hypothetical protein
1835	 39.12	-2	2073622..2074053	-	143	189500835	-	Cphamn1_1908	-	S23 ribosomal protein
1836	 54.80	+1	2074165..2074695	-	176	189500836	-	Cphamn1_1909	-	Adenylyl-sulfate kinase
1837	 53.17	+1	2075111..2075866	-	251	189500837	-	Cphamn1_1910	-	protein of unknown function DUF218
1838	 47.75	0	2075981..2077048	-	355	189500838	-	Cphamn1_1911	-	dTDP-glucose 4,6-dehydratase
1839	 38.41	-2	2077275..2077412	-	45	189500839	-	Cphamn1_1912	-	hypothetical protein
1840	 43.77	-1	2077681..2078274	-	197	189500840	-	Cphamn1_1913	-	dTDP-4-dehydrorhamnose 3,5-epimerase
1841	 49.83	0	2078329..2079225	-	298	189500841	-	Cphamn1_1914	-	glucose-1-phosphate thymidylyltransferase
1842	 42.30	-1	2080569..2081561	-	330	189500842	-	Cphamn1_1916	-	NAD-dependent epimerase/dehydratase
1843	 45.26	0	2081594..2082658	-	354	189500843	-	Cphamn1_1917	-	dTDP-glucose 4,6-dehydratase
1844	 45.58	0	2082658..2083245	-	195	189500844	-	Cphamn1_1918	-	dTDP-4-dehydrorhamnose 3,5-epimerase
1845	 55.30	+1	2083303..2084199	-	298	189500845	-	Cphamn1_1919	-	glucose-1-phosphate thymidylyltransferase
1846	 56.98	+1	2084513..2086009	-	498	189500846	-	Cphamn1_1921	-	transposase, IS5 family, putative
1847	 52.67	0	2086131..2087102	-	323	189500847	-	Cphamn1_1922	-	transposase IS204/IS1001/IS1096/IS1165 family protein
1848	 33.45	-2	2087195..2088016	-	273	189500848	-	Cphamn1_1923	-	glycosyl transferase family 2
1849	 30.63	-2	2088182..2089033	-	283	189500849	-	Cphamn1_1924	-	glycosyl transferase family 11
1850	 31.56	-2	2089038..2089826	-	262	189500850	-	Cphamn1_1925	-	glycosyl transferase family 2
1851	 53.36	+1	2090661..2092058	-	465	189500851	-	Cphamn1_1926	-	hypothetical protein
1852	 35.29	-2	2092169..2093035	-	288	189500852	-	Cphamn1_1927	-	cobalamin B12-binding domain protein
1853	 32.53	-2	2093274..2094521	-	415	189500853	-	Cphamn1_1928	-	O-antigen polymerase
1854	 30.98	-2	2094543..2095817	-	424	189500854	-	Cphamn1_1929	-	polysaccharide biosynthesis protein
1855	 39.57	-2	2095848..2097017	-	389	189500855	-	Cphamn1_1930	-	DegT/DnrJ/EryC1/StrS aminotransferase
1856	 45.62	0	2097014..2097949	-	311	189500856	-	Cphamn1_1931	-	NAD-dependent epimerase/dehydratase
1857	 43.50	-1	2097993..2099054	-	353	189500857	-	Cphamn1_1932	-	GDP-mannose 4,6-dehydratase
1858	 45.34	0	2099114..2099521	-	135	189500858	-	Cphamn1_1933	-	polysaccharide biosynthesis protein
1859	 44.57	-1	2099724..2099981	-	85	189500859	-	Cphamn1_1934	-	S23 ribosomal protein
1860	 40.89	-1	2100444..2100668	-	74	189500860	-	Cphamn1_1936	-	YcfA family protein
1861	 42.22	-1	2100668..2100892	-	74	189500861	-	Cphamn1_1937	-	hypothetical protein
1862	 39.88	-2	2100972..2101139	-	55	189500862	-	Cphamn1_1938	-	hypothetical protein
1863	 40.13	-2	2101316..2101624	-	102	189500863	-	Cphamn1_1939	-	hypothetical protein
1864	 42.01	-1	2102085..2102453	-	122	189500864	-	Cphamn1_1940	-	S23 ribosomal protein
1865	 37.80	-2	2102915..2103205	-	96	189500865	-	Cphamn1_1941	-	hypothetical protein
1866	 41.10	-1	2103202..2103420	-	72	189500866	-	Cphamn1_1942	-	hypothetical protein
1867	 40.39	-2	2103871..2104125	-	84	189500867	-	Cphamn1_1944	-	Excinuclease ABC C subunit domain protein
1868	 46.95	0	2104529..2104741	-	70	189500868	-	Cphamn1_1945	-	protein of unknown function UPF0150
1869	 39.85	-2	2104731..2104991	-	86	189500869	-	Cphamn1_1946	-	hypothetical protein
1870	 40.18	-2	2105200..2105535	-	111	189500870	-	Cphamn1_1947	-	protein of unknown function DUF86
1871	 37.11	-2	2105528..2105818	-	96	189500871	-	Cphamn1_1948	-	DNA polymerase beta domain protein region
1872	 42.55	-1	2105987..2106355	-	122	189500872	-	Cphamn1_1949	-	S23 ribosomal protein
1873	 40.44	-2	2106826..2107050	-	74	189500873	-	Cphamn1_1950	-	hypothetical protein
1874	 40.44	-2	2107253..2107477	-	74	189500874	-	Cphamn1_1951	-	YcfA family protein
1875	 42.22	-1	2107477..2107701	-	74	189500875	-	Cphamn1_1952	-	hypothetical protein
1876	 39.88	-2	2107781..2107948	-	55	189500876	-	Cphamn1_1953	-	hypothetical protein
1877	 40.13	-2	2108125..2108433	-	102	189500877	-	Cphamn1_1954	-	hypothetical protein
1878	 37.80	-2	2108698..2108988	-	96	189500878	-	Cphamn1_1955	-	hypothetical protein
1879	 41.10	-1	2108985..2109203	-	72	189500879	-	Cphamn1_1956	-	hypothetical protein
1880	 47.42	0	2109504..2109716	-	70	189500880	-	Cphamn1_1957	-	protein of unknown function UPF0150
1881	 40.18	-2	2110066..2110401	-	111	189500881	-	Cphamn1_1958	-	protein of unknown function DUF86
1882	 37.11	-2	2110394..2110684	-	96	189500882	-	Cphamn1_1959	-	DNA polymerase beta domain protein region
1883	 42.82	-1	2110853..2111221	-	122	189500883	-	Cphamn1_1960	-	S23 ribosomal protein
1884	 43.94	-1	2111624..2112019	-	131	189500884	-	Cphamn1_1961	-	PilT protein domain protein
1885	 43.82	-1	2112016..2112282	-	88	189500885	-	Cphamn1_1962	-	hypothetical protein
1886	 40.44	-2	2112490..2112714	-	74	189500886	-	Cphamn1_1963	-	hypothetical protein
1887	 51.64	0	2112961..2113386	-	141	189500887	-	Cphamn1_1964	-	PilT protein domain protein
1888	 52.92	0	2113383..2113622	-	79	189500888	-	Cphamn1_1965	-	hypothetical protein
1889	 39.74	-2	2114007..2114162	-	51	189500889	-	Cphamn1_1966	-	hypothetical protein
1890	 53.10	+1	2114442..2115842	+	466	189500890	-	Cphamn1_1968	-	hypothetical protein
1891	 42.79	-1	2116376..2116576	-	66	189500891	-	Cphamn1_1969	-	hypothetical protein
1892	 35.42	-2	2116573..2116812	-	79	189500892	-	Cphamn1_1970	-	hypothetical protein
1893	 54.01	+1	2117131..2117541	-	136	189500893	-	Cphamn1_1971	-	protein of unknown function DUF86
1894	 54.04	+1	2117526..2117921	-	131	189500894	-	Cphamn1_1972	-	DNA polymerase beta domain protein region
1895	 39.57	-2	2118199..2118567	-	122	189500895	-	Cphamn1_1973	-	S23 ribosomal protein
1896	 54.15	+1	2118853..2120034	-	393	189500896	-	Cphamn1_1974	-	glycosyl transferase family 4
1897	 55.93	+1	2120445..2120975	-	176	189500897	-	Cphamn1_1975	-	putative glycosyl transferase, family 4
1898	 56.03	+1	2121033..2122376	-	447	189500898	-	Cphamn1_1976	-	hypothetical protein
1899	 53.69	+1	2122444..2124855	-	803	189500899	-	Cphamn1_1977	-	capsular exopolysaccharide family
1900	 46.23	0	2125707..2126489	-	260	189500900	-	Cphamn1_1978	-	hypothetical protein
1901	 33.95	-2	2126548..2126709	+	53	189500901	-	Cphamn1_1979	-	hypothetical protein
1902	 59.31	+2	2126901..2127104	-	67	189500902	-	Cphamn1_1980	-	hypothetical protein
1903	 54.76	+1	2127163..2127498	+	111	189500903	-	Cphamn1_1981	-	alpha-2-HS-glycoprotein
1904	 54.68	+1	2127883..2131404	+	1173	189500904	-	Cphamn1_1982	-	alpha amylase catalytic region
1905	 54.81	+1	2131507..2131776	-	89	189500905	-	Cphamn1_1983	-	hypothetical protein
1906	 38.94	-2	2132444..2132746	-	100	189500906	-	Cphamn1_1984	-	Excinuclease ABC C subunit domain protein
1907	 55.69	+1	2133089..2133334	-	81	189500907	-	Cphamn1_1985	-	hypothetical protein
1908	 52.62	0	2133418..2134713	-	431	189500908	-	Cphamn1_1986	-	Cytochrome b/b6 domain
1909	 49.73	0	2134748..2135296	-	182	189500909	-	Cphamn1_1987	-	Plastoquinol--plastocyanin reductase
48.93	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.