IslandPath Analysis: Chlorobium phaeobacteroides BS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.93   STD DEV: 4.12
Chlorobium phaeobacteroides BS1, complete genome - 1..2736403
2469 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1490	 53.08	+1	1680116..1680895	+	259	189500490	-	Cphamn1_1556	-	thiazole biosynthesis family protein
1491	 51.63	0	1680892..1681962	+	356	189500491	-	Cphamn1_1557	-	biotin and thiamin synthesis associated
1492	 49.56	0	1682079..1682534	-	151	189500492	-	Cphamn1_1558	-	hypothetical protein
1493	 45.93	0	1682551..1683780	-	409	189500493	-	Cphamn1_1559	-	hypothetical protein
1494	 54.28	+1	1683946..1687110	-	1054	189500494	-	Cphamn1_1560	-	UvrD/REP helicase
1495	 54.54	+1	1687107..1689737	-	876	189500495	-	Cphamn1_1561	-	hypothetical protein
1496	 50.17	0	1690534..1691127	+	197	189500496	-	Cphamn1_1562	-	major paralogous domain
1497	 52.18	0	1691313..1692023	-	236	189500497	-	Cphamn1_1563	-	major paralogous domain
1498	 46.11	0	1692229..1692408	+	59	189500498	-	Cphamn1_1564	-	hypothetical protein
1499	 43.54	-1	1692416..1692709	-	97	189500499	-	Cphamn1_1565	-	hypothetical protein
1500	 51.67	0	1692842..1693441	-	199	189500500	-	Cphamn1_1566	-	Methyltransferase type 11
1501	 46.11	0	1693428..1694405	-	325	189500501	-	Cphamn1_1567	-	alpha/beta hydrolase fold
1502	 50.69	0	1694650..1695732	+	360	189500502	-	Cphamn1_1568	-	phosphoserine aminotransferase
1503	 50.43	0	1695745..1696908	+	387	189500503	-	Cphamn1_1569	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
1504	 45.98	0	1697042..1697713	+	223	189500504	-	Cphamn1_1570	-	HAD-superfamily hydrolase, subfamily IA, variant 3
1505	 39.27	-2	1697796..1698098	-	100	189500505	-	Cphamn1_1571	-	plasmid stabilization system
1506	 43.33	-1	1698095..1698304	-	69	189500506	-	Cphamn1_1572	-	addiction module component, TIGR02574 family
1507	 50.67	0	1699040..1699714	-	224	189500507	-	Cphamn1_1574	-	hypothetical protein
1508	 44.81	0	1699726..1699908	-	60	189500508	-	Cphamn1_1575	-	cytochrome oxidase maturation protein, cbb3-type
1509	 50.74	0	1700174..1702597	-	807	189500509	-	Cphamn1_1576	-	heavy metal translocating P-type ATPase
1510	 50.64	0	1702584..1702976	-	130	189500510	-	Cphamn1_1577	-	hypothetical protein
1511	 45.66	0	1703006..1703443	-	145	189500511	-	Cphamn1_1578	-	hypothetical protein
1512	 56.08	+1	1704260..1705666	-	468	189500512	-	Cphamn1_1579	-	transposase IS4 family protein
1513	 37.56	-2	1707440..1707652	-	70	189500513	-	Cphamn1_1581	-	hypothetical protein
1514	 46.47	0	1707853..1708956	-	367	189500514	-	Cphamn1_1582	-	polyferredoxin-like protein
1515	 45.32	0	1708969..1709427	-	152	189500515	-	Cphamn1_1583	-	cytochrome c class I
1516	 42.62	-1	1709420..1709602	-	60	189500516	-	Cphamn1_1584	-	hypothetical protein
1517	 50.74	0	1709599..1710276	-	225	189500517	-	Cphamn1_1585	-	cytochrome C oxidase mono-heme subunit/FixO
1518	 46.77	0	1710273..1711679	-	468	189500518	-	Cphamn1_1586	-	cytochrome c oxidase subunit I
1519	 40.89	-1	1712092..1712541	+	149	189500519	-	Cphamn1_1587	-	6-pyruvoyl tetrahydropterin synthase and hypothetical protein
1520	 45.68	0	1712501..1713172	+	223	189500520	-	Cphamn1_1588	-	GTP cyclohydrolase I
1521	 45.51	0	1713348..1714415	+	355	189500521	-	Cphamn1_1589	-	protein of unknown function UPF0118
1522	 50.10	0	1714907..1715389	-	160	189500522	-	Cphamn1_1590	-	hydrogenase maturation protease
1523	 48.84	0	1715720..1716409	-	229	189500523	-	Cphamn1_1591	-	Ni/Fe-hydrogenase, b-type cytochrome subunit
1524	 49.97	0	1716422..1718140	-	572	189500524	-	Cphamn1_1592	-	nickel-dependent hydrogenase large subunit
1525	 49.73	0	1718193..1719284	-	363	189500525	-	Cphamn1_1593	-	hydrogenase (NiFe) small subunit HydA
1526	 48.78	0	1719781..1721217	+	478	189500526	-	Cphamn1_1594	-	hypothetical protein
1527	 38.51	-2	1721221..1722264	-	347	189500527	-	Cphamn1_1595	-	protein of unknown function DUF21
1528	 39.44	-2	1722280..1722459	-	59	189500528	-	Cphamn1_1596	-	hypothetical protein
1529	 50.52	0	1722602..1724137	-	511	189500529	-	Cphamn1_1597	-	proton-translocating NADH-quinone oxidoreductase, chain N
1530	 51.10	0	1724157..1725794	-	545	189500530	-	Cphamn1_1598	-	proton-translocating NADH-quinone oxidoreductase, chain M
1531	 50.42	0	1725854..1728142	-	762	189500531	-	Cphamn1_1599	-	proton-translocating NADH-quinone oxidoreductase, chain L
1532	 45.28	0	1728194..1728511	-	105	189500532	-	Cphamn1_1600	-	NADH-ubiquinone oxidoreductase chain 4L
1533	 44.19	-1	1728519..1729043	-	174	189500533	-	Cphamn1_1601	-	NADH-ubiquinone/plastoquinone oxidoreductase chain 6
1534	 48.63	0	1729073..1729693	-	206	189500534	-	Cphamn1_1602	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
1535	 47.54	0	1729709..1730827	-	372	189500535	-	Cphamn1_1603	-	NADH dehydrogenase (quinone)
1536	 49.79	0	1730824..1732026	-	400	189500536	-	Cphamn1_1604	-	NADH dehydrogenase (quinone)
1537	 49.43	0	1732071..1732598	-	175	189500537	-	Cphamn1_1605	-	NADH (or F420H2) dehydrogenase, subunit C
1538	 49.21	0	1732622..1733194	-	190	189500538	-	Cphamn1_1606	-	NADH-quinone oxidoreductase, B subunit
1539	 48.25	0	1733221..1733649	-	142	189500539	-	Cphamn1_1607	-	NADH-ubiquinone/plastoquinone oxidoreductase chain 3
1540	 42.17	-1	1733857..1734105	-	82	189500540	-	Cphamn1_1608	-	hypothetical protein
1541	 49.74	0	1734095..1734679	-	194	189500541	-	Cphamn1_1609	-	TPR repeat-containing protein
1542	 43.76	-1	1735699..1736283	-	194	189500542	-	Cphamn1_1611	-	hypothetical protein
1543	 49.04	0	1736685..1737206	+	173	189500543	-	Cphamn1_1612	-	histidine triad (HIT) protein
1544	 51.39	0	1737502..1738437	+	311	189500544	-	Cphamn1_1613	-	Methyltransferase type 12
1545	 52.09	0	1738641..1740341	+	566	189500545	-	Cphamn1_1614	-	sodium/hydrogen exchanger
1546	 48.63	0	1740381..1741328	+	315	189500546	-	Cphamn1_1615	-	UspA domain protein
1547	 52.21	0	1741443..1744133	+	896	189500547	-	Cphamn1_1616	-	ATPase, P-type (transporting), HAD superfamily, subfamily IC
1548	 51.42	0	1744239..1745642	-	467	189500548	-	Cphamn1_1617	-	outer membrane efflux protein
1549	 52.69	0	1745705..1747042	-	445	189500549	-	Cphamn1_1618	-	AAA ATPase central domain protein
1550	 51.14	0	1747188..1747844	-	218	189500550	-	Cphamn1_1619	-	riboflavin synthase, alpha subunit
1551	 46.11	0	1747851..1748351	-	166	189500551	-	Cphamn1_1620	-	Redoxin domain protein
1552	 48.20	0	1748637..1749053	-	138	189500552	-	Cphamn1_1621	-	DoxX family protein
1553	 48.20	0	1749217..1750218	-	333	189500553	-	Cphamn1_1622	-	Outer membrane protein (porin)-like protein
1554	 51.61	0	1750663..1751778	-	371	189500554	-	Cphamn1_1623	-	riboflavin biosynthesis protein RibD
1555	 49.33	0	1751797..1752321	-	174	189500555	-	Cphamn1_1624	-	CMP/dCMP deaminase zinc-binding
1556	 46.69	0	1752411..1754057	+	548	189500556	-	Cphamn1_1625	-	protein of unknown function DUF814
1557	 43.33	-1	1754073..1754432	+	119	189500557	-	Cphamn1_1626	-	thioesterase superfamily protein
1558	 47.59	0	1754441..1755766	-	441	189500558	-	Cphamn1_1627	-	permease YjgP/YjgQ family protein
1559	 51.13	0	1756027..1756380	-	117	189500559	-	Cphamn1_1628	-	preprotein translocase, SecG subunit
1560	 47.43	0	1756632..1757234	+	200	189500560	-	Cphamn1_1629	-	Imidazoleglycerol-phosphate dehydratase
1561	 46.98	0	1757499..1759073	-	524	189500561	-	Cphamn1_1630	-	RNA binding metal dependent phosphohydrolase
1562	 43.56	-1	1759388..1759651	-	87	189500562	-	Cphamn1_1631	-	hypothetical protein
1563	 45.02	0	1759659..1759949	-	96	189500563	-	Cphamn1_1632	-	hypothetical protein
1564	 48.52	0	1759961..1762363	-	800	189500564	-	Cphamn1_1633	-	phenylalanyl-tRNA synthetase, beta subunit
1565	 51.39	0	1763317..1764612	-	431	189500565	-	Cphamn1_1634	-	outer membrane efflux protein
1566	 51.25	0	1764814..1767978	-	1054	189500566	-	Cphamn1_1635	-	acriflavin resistance protein
1567	 49.40	0	1768093..1769256	-	387	189500567	-	Cphamn1_1636	-	efflux transporter, RND family, MFP subunit
1568	 45.70	0	1769269..1769745	-	158	189500568	-	Cphamn1_1637	-	transcriptional regulator, MarR family
1569	 49.40	0	1769867..1770283	-	138	189500569	-	Cphamn1_1638	-	NUDIX hydrolase
1570	 46.22	0	1770501..1771478	+	325	189500570	-	Cphamn1_1639	-	Nucleotidyl transferase
1571	 51.31	0	1771705..1772922	+	405	189500571	-	Cphamn1_1640	-	Methionine adenosyltransferase
1572	 51.73	0	1772990..1774408	+	472	189500572	-	Cphamn1_1641	-	adenosylhomocysteinase
1573	 50.00	0	1774741..1775394	+	217	189500573	-	Cphamn1_1642	-	Phosphoribosylanthranilate isomerase
1574	 48.38	0	1775389..1776285	-	298	189500574	-	Cphamn1_1643	-	alpha/beta hydrolase fold
1575	 47.82	0	1776557..1776991	+	144	189500575	-	Cphamn1_1644	-	protein tyrosine phosphatase
1576	 52.10	0	1777782..1778282	-	166	189500576	-	Cphamn1_1646	-	Rubrerythrin
1577	 49.25	0	1778358..1779161	-	267	189500577	-	Cphamn1_1647	-	putative adenylate/guanylate cyclase
1578	 49.63	0	1779396..1779929	+	177	189500578	-	Cphamn1_1648	-	transcriptional regulator, MarR family
1579	 51.14	0	1779886..1781199	+	437	189500579	-	Cphamn1_1649	-	lysine 2,3-aminomutase YodO family protein
1580	 50.21	0	1781209..1782660	+	483	189500580	-	Cphamn1_1650	-	SSS sodium solute transporter superfamily
1581	 49.82	0	1782666..1783502	+	278	189500581	-	Cphamn1_1651	-	GCN5-related N-acetyltransferase
1582	 51.31	0	1783656..1784834	+	392	189500582	-	Cphamn1_1652	-	sodium/hydrogen exchanger
1583	 46.67	0	1784915..1785154	-	79	189500583	-	Cphamn1_1653	-	hypothetical protein
1584	 41.19	-1	1785467..1785784	+	105	189500584	-	Cphamn1_1654	-	hypothetical protein
1585	 46.78	0	1785806..1787158	-	450	189500585	-	Cphamn1_1655	-	multi antimicrobial extrusion protein MatE
1586	 48.72	0	1787407..1787640	+	77	189500586	-	Cphamn1_1656	-	hypothetical protein
1587	 43.07	-1	1787585..1788046	-	153	189500587	-	Cphamn1_1657	-	DoxX family protein
1588	 46.51	0	1788051..1788809	-	252	189500588	-	Cphamn1_1658	-	Rhodanese domain protein
1589	 49.10	0	1789042..1789485	+	147	189500589	-	Cphamn1_1659	-	hypothetical protein
48.93	MEAN

4.12	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.