IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides BS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.93 STD DEV: 4.12
Chlorobium phaeobacteroides BS1, complete genome - 1..2736403
2469 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1327	 57.33	+2	1506057..1506281	+	74	189500327	-	Cphamn1_1388	-	hypothetical protein
1328	 48.63	0	1506285..1506467	-	60	189500328	-	Cphamn1_1389	-	hypothetical protein
1329	 45.40	0	1506530..1506703	-	57	189500329	-	Cphamn1_1390	-	hypothetical protein
1330	 46.12	0	1506753..1507010	-	85	189500330	-	Cphamn1_1391	-	transcriptional regulator, ArsR family
1331	 45.19	0	1507155..1507424	-	89	189500331	-	Cphamn1_1392	-	RNP-1 like RNA-binding protein
1332	 44.02	-1	1507744..1509231	+	495	189500332	-	Cphamn1_1393	-	hypothetical protein
1333	 56.39	+1	1509226..1509984	-	252	189500333	-	Cphamn1_1394	-	short-chain dehydrogenase/reductase SDR
1334	 53.79	+1	1510082..1510516	-	144	189500334	-	Cphamn1_1395	-	hypothetical protein
1335	 53.79	+1	1510575..1511918	-	447	189500335	-	Cphamn1_1396	-	Radical SAM domain protein
1336	 54.80	+1	1511919..1512938	-	339	189500336	-	Cphamn1_1397	-	hypothetical protein
1337	 52.27	0	1513158..1514852	-	564	189500337	-	Cphamn1_1398	-	AMP-dependent synthetase and ligase
1338	 48.71	0	1514985..1516337	-	450	189500338	-	Cphamn1_1399	-	Xanthine/uracil/vitamin C permease
1339	 46.82	0	1516478..1517404	-	308	189500339	-	Cphamn1_1400	-	Cache type 2 domain protein
1340	 46.98	0	1517539..1517919	-	126	189500340	-	Cphamn1_1401	-	PilT protein domain protein
1341	 43.96	-1	1517916..1518122	-	68	189500341	-	Cphamn1_1402	-	transcriptional regulator, AbrB family
1342	 49.76	0	1518504..1519136	+	210	189500342	-	Cphamn1_1403	-	hypothetical protein
1343	 47.97	0	1519465..1520769	+	434	189500343	-	Cphamn1_1404	-	radical SAM domain protein
1344	 44.80	-1	1521044..1521985	+	313	189500344	-	Cphamn1_1405	-	8-oxoguanine DNA glycosylase domain protein
1345	 53.48	+1	1522008..1522841	+	277	189500345	-	Cphamn1_1406	-	peptidase M48 Ste24p
1346	 53.15	+1	1523093..1523980	+	295	189500346	-	Cphamn1_1407	-	NmrA family protein
1347	 54.02	+1	1524906..1527452	+	848	189500347	-	Cphamn1_1408	-	aminopeptidase N
1348	 53.61	+1	1527516..1528373	+	285	189500348	-	Cphamn1_1409	-	hypothetical protein
1349	 49.43	0	1528669..1529196	+	175	189500349	-	Cphamn1_1410	-	Flavodoxin-like protein
1350	 54.77	+1	1529301..1530233	-	310	189500350	-	Cphamn1_1411	-	HpcH/HpaI aldolase
1351	 43.07	-1	1530727..1531188	-	153	189500351	-	Cphamn1_1412	-	DNA mismatch endonuclease Vsr
1352	 45.61	0	1531283..1532545	-	420	189500352	-	Cphamn1_1413	-	DNA-cytosine methyltransferase
1353	 45.81	0	1532651..1534558	-	635	189500353	-	Cphamn1_1414	-	hypothetical protein
1354	 46.11	0	1534573..1538220	-	1215	189500354	-	Cphamn1_1415	-	helicase domain protein
1355	 47.96	0	1538213..1539949	-	578	189500355	-	Cphamn1_1416	-	NERD domain protein
1356	 43.56	-1	1539937..1541559	-	540	189500356	-	Cphamn1_1417	-	hypothetical protein
1357	 42.52	-1	1541562..1542530	-	322	189500357	-	Cphamn1_1418	-	hypothetical protein
1358	 54.32	+1	1542990..1543937	-	315	189500358	-	Cphamn1_1419	-	protein of unknown function DUF477
1359	 54.01	+1	1543934..1544581	-	215	189500359	-	Cphamn1_1420	-	protein of unknown function DUF477
1360	 50.97	0	1544652..1545728	-	358	189500360	-	Cphamn1_1421	-	lysine 2,3-aminomutase YodO family protein
1361	 56.69	+1	1545918..1546799	+	293	189500361	-	Cphamn1_1422	-	NmrA family protein
1362	 54.40	+1	1546950..1547927	-	325	189500362	-	Cphamn1_1423	-	protein of unknown function DUF1568
1363	 43.52	-1	1548158..1548736	-	192	189500363	-	Cphamn1_1424	-	hypothetical protein
1364	 49.37	0	1548844..1549716	+	290	189500364	-	Cphamn1_1425	-	NAD-dependent epimerase/dehydratase
1365	 50.56	0	1549700..1550059	-	119	189500365	-	Cphamn1_1426	-	hypothetical protein
1366	 46.37	0	1550188..1551276	+	362	189500366	-	Cphamn1_1427	-	radical SAM enzyme, Cfr family
1367	 42.45	-1	1551297..1552031	+	244	189500367	-	Cphamn1_1428	-	hypothetical protein
1368	 47.34	0	1552052..1552708	+	218	189500368	-	Cphamn1_1429	-	Nucleoside-triphosphate--adenylate kinase
1369	 49.86	0	1552773..1555211	+	812	189500369	-	Cphamn1_1430	-	primosomal protein N'
1370	 56.51	+1	1555465..1556961	-	498	189500370	-	Cphamn1_1432	-	transposase, IS5 family, putative
1371	 45.71	0	1557283..1557783	+	166	189500371	-	Cphamn1_1433	-	DoxX family protein
1372	 45.99	0	1557994..1558815	+	273	189500372	-	Cphamn1_1434	-	hypothetical protein
1373	 44.33	-1	1558941..1559549	-	202	189500373	-	Cphamn1_1435	-	outer surface protein, putative
1374	 48.25	0	1559714..1560169	-	151	189500374	-	Cphamn1_1436	-	3-dehydroquinate dehydratase, type II
1375	 49.39	0	1560169..1560828	-	219	189500375	-	Cphamn1_1437	-	protein of unknown function UPF0005
1376	 48.07	0	1561216..1562688	-	490	189500376	-	Cphamn1_1438	-	heat shock protein HslVU, ATPase subunit HslU
1377	 51.00	0	1562773..1563321	-	182	189500377	-	Cphamn1_1439	-	20S proteasome A and B subunits
1378	 45.55	0	1563403..1564851	-	482	189500378	-	Cphamn1_1440	-	RNA polymerase, sigma 54 subunit, RpoN
1379	 46.56	0	1564838..1565389	-	183	189500379	-	Cphamn1_1441	-	hypothetical protein
1380	 48.38	0	1565679..1566575	+	298	189500380	-	Cphamn1_1442	-	Methenyltetrahydrofolate cyclohydrolase
1381	 51.43	0	1566581..1567945	+	454	189500381	-	Cphamn1_1443	-	DNA repair protein RadA
1382	 49.71	0	1568037..1568378	+	113	189500382	-	Cphamn1_1444	-	membrane protein of unknown function
1383	 48.80	0	1568412..1569368	+	318	189500383	-	Cphamn1_1445	-	Alcohol dehydrogenase GroES domain protein
1384	 50.29	0	1569373..1570917	+	514	189500384	-	Cphamn1_1446	-	ABC transporter-related protein
1385	 51.43	0	1570930..1571946	+	338	189500385	-	Cphamn1_1447	-	inner-membrane translocator
1386	 50.27	0	1571948..1573831	-	627	189500386	-	Cphamn1_1448	-	Chloride channel core
1387	 31.92	-2	1573855..1574067	+	70	189500387	-	Cphamn1_1449	-	hypothetical protein
1388	 45.64	0	1574132..1574326	+	64	189500388	-	Cphamn1_1450	-	hypothetical protein
1389	 42.86	-1	1574401..1574568	+	55	189500389	-	Cphamn1_1451	-	hypothetical protein
1390	 46.67	0	1574578..1575312	-	244	189500390	-	Cphamn1_1452	-	PASTA domain containing protein
1391	 56.08	+1	1575421..1576827	+	468	189500391	-	Cphamn1_1453	-	transposase IS4 family protein
1392	 45.85	0	1577135..1578109	-	324	189500392	-	Cphamn1_1454	-	Polyprenyl synthetase
1393	 45.15	0	1579456..1580445	-	329	189500393	-	Cphamn1_1456	-	transposase IS4 family protein
1394	 45.78	0	1580445..1580942	-	165	189500394	-	Cphamn1_1457	-	hypothetical protein
1395	 50.51	0	1581691..1581987	-	98	189500395	-	Cphamn1_1458	-	NADP oxidoreductase, coenzyme F420-dependent
1396	 45.67	0	1583166..1584032	+	288	189500396	-	Cphamn1_1459	-	Sec-independent protein translocase, TatC subunit
1397	 48.62	0	1584021..1584674	-	217	189500397	-	Cphamn1_1460	-	dephospho-CoA kinase
1398	 47.49	0	1584667..1585005	-	112	189500398	-	Cphamn1_1461	-	hypothetical protein
1399	 49.83	0	1585197..1585802	+	201	189500399	-	Cphamn1_1462	-	Superoxide dismutase
1400	 49.58	0	1586010..1586834	-	274	189500400	-	Cphamn1_1463	-	hypothetical protein
1401	 49.37	0	1587007..1588191	+	394	189500401	-	Cphamn1_1464	-	hypothetical protein
1402	 52.25	0	1588069..1588623	-	184	189500402	-	Cphamn1_1465	-	hypothetical protein
1403	 48.53	0	1588929..1589507	-	192	189500403	-	Cphamn1_1466	-	hypothetical protein
1404	 48.33	0	1589566..1590372	-	268	189500404	-	Cphamn1_1467	-	thioredoxin
1405	 39.33	-2	1590424..1590573	-	49	189500405	-	Cphamn1_1468	-	hypothetical protein
1406	 40.70	-1	1591325..1591840	+	171	189500406	-	Cphamn1_1469	-	hypothetical protein
1407	 45.10	0	1591887..1592090	+	67	189500407	-	Cphamn1_1470	-	hypothetical protein
1408	 48.46	0	1592106..1592462	+	118	189500408	-	Cphamn1_1471	-	hypothetical protein
1409	 51.29	0	1592499..1594637	+	712	189500409	-	Cphamn1_1472	-	hypothetical protein
1410	 50.77	0	1594703..1595350	+	215	189500410	-	Cphamn1_1473	-	hypothetical protein
1411	 45.13	0	1595489..1596073	+	194	189500411	-	Cphamn1_1474	-	hypothetical protein
1412	 46.03	0	1596287..1597255	+	322	189500412	-	Cphamn1_1475	-	hypothetical protein
1413	 53.38	+1	1597237..1598478	-	413	189500413	-	Cphamn1_1476	-	HI0933 family protein
1414	 52.00	0	1598756..1599928	-	390	189500414	-	Cphamn1_1477	-	efflux transporter, RND family, MFP subunit
1415	 51.78	0	1600136..1602499	-	787	189500415	-	Cphamn1_1478	-	protein of unknown function DUF214
1416	 50.07	0	1602507..1603241	-	244	189500416	-	Cphamn1_1479	-	ABC transporter-related protein
1417	 44.64	-1	1603427..1603762	+	111	189500417	-	Cphamn1_1480	-	hypothetical protein
1418	 52.05	0	1603759..1605243	+	494	189500418	-	Cphamn1_1481	-	pyridine nucleotide-disulphide oxidoreductase dimerisation region
1419	 47.13	0	1605317..1605787	+	156	189500419	-	Cphamn1_1482	-	nuclear protein SET
1420	 45.48	0	1605809..1606228	-	139	189500420	-	Cphamn1_1483	-	hypothetical protein
1421	 45.65	0	1606378..1606653	-	91	189500421	-	Cphamn1_1484	-	hypothetical protein
1422	 51.96	0	1606667..1607890	-	407	189500422	-	Cphamn1_1485	-	iron-containing alcohol dehydrogenase
1423	 49.55	0	1607907..1609028	-	373	189500423	-	Cphamn1_1486	-	KWG Leptospira repeat protein
1424	 51.90	0	1609033..1609506	-	157	189500424	-	Cphamn1_1487	-	protein of unknown function DUF134
1425	 45.77	0	1609805..1610785	-	326	189500425	-	Cphamn1_1488	-	C4-dicarboxylate transporter/malic acid transport protein
1426	 45.05	0	1610857..1611402	-	181	189500426	-	Cphamn1_1489	-	OsmC family protein
48.93	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.