IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides BS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.93 STD DEV: 4.12
Chlorobium phaeobacteroides BS1, complete genome - 1..2736403
2469 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1217	 49.16	0	1384400..1387489	-	1029	189500217	-	Cphamn1_1274	-	preprotein translocase, SecA subunit
1218	 48.40	0	1387853..1388914	+	353	189500218	-	Cphamn1_1275	-	phosphoesterase RecJ domain protein
1219	 50.35	0	1390529..1391233	+	234	189500219	-	Cphamn1_1277	-	hypothetical protein
1220	 46.60	0	1391215..1392066	+	283	189500220	-	Cphamn1_1278	-	hypothetical protein
1221	 51.13	0	1392063..1393388	-	441	189500221	-	Cphamn1_1279	-	sodium:dicarboxylate symporter
1222	 51.12	0	1394122..1395459	+	445	189500222	-	Cphamn1_1280	-	nucleotide sugar dehydrogenase
1223	 53.65	+1	1395463..1396284	-	273	189500223	-	Cphamn1_1281	-	phosphomethylpyrimidine kinase
1224	 52.01	0	1396272..1396892	-	206	189500224	-	Cphamn1_1282	-	thiamine-phosphate pyrophosphorylase
1225	 51.02	0	1396889..1397527	-	212	189500225	-	Cphamn1_1283	-	Thiamine-phosphate diphosphorylase
1226	 42.42	-1	1397524..1397622	-	32	189500226	-	Cphamn1_1284	-	hypothetical protein
1227	 52.23	0	1397800..1398270	+	156	189500227	-	Cphamn1_1285	-	Endoribonuclease L-PSP
1228	 37.87	-2	1398254..1398760	-	168	189500228	-	Cphamn1_1286	-	protein of unknown function DUF192
1229	 48.07	0	1399293..1400900	+	535	189500229	-	Cphamn1_1287	-	carboxyl-terminal protease
1230	 47.66	0	1400966..1401628	+	220	189500230	-	Cphamn1_1288	-	cyclase/dehydrase
1231	 46.12	0	1401707..1402324	+	205	189500231	-	Cphamn1_1289	-	hypothetical protein
1232	 50.66	0	1402415..1403395	-	326	189500232	-	Cphamn1_1290	-	rfaE bifunctional protein
1233	 47.63	0	1403707..1405056	+	449	189500233	-	Cphamn1_1291	-	signal recognition particle protein
1234	 52.35	0	1405093..1405497	+	134	189500234	-	Cphamn1_1292	-	ribosomal protein S16
1235	 46.67	0	1405506..1406015	+	169	189500235	-	Cphamn1_1293	-	16S rRNA processing protein RimM
1236	 46.92	0	1406148..1406861	+	237	189500236	-	Cphamn1_1294	-	tRNA (guanine-N1)-methyltransferase
1237	 44.54	-1	1406886..1407251	+	121	189500237	-	Cphamn1_1295	-	ribosomal protein L19
1238	 50.52	0	1407603..1408271	+	222	189500238	-	Cphamn1_1296	-	HhH-GPD family protein
1239	 53.33	+1	1409931..1410065	+	44	189500239	-	Cphamn1_1298	-	hypothetical protein
1240	 47.10	0	1410093..1411922	-	609	189500240	-	Cphamn1_1299	-	AMP-dependent synthetase and ligase
1241	 46.02	0	1412330..1413070	-	246	189500241	-	Cphamn1_1300	-	Cobyrinic acid ac-diamide synthase
1242	 47.61	0	1413067..1414635	-	522	189500242	-	Cphamn1_1301	-	CHAD domain containing protein
1243	 49.39	0	1414920..1415909	+	329	189500243	-	Cphamn1_1302	-	basic membrane lipoprotein
1244	 47.41	0	1416044..1417045	+	333	189500244	-	Cphamn1_1303	-	NAD-dependent epimerase/dehydratase
1245	 47.77	0	1417057..1419009	+	650	189500245	-	Cphamn1_1304	-	putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase
1246	 49.50	0	1419002..1419700	+	232	189500246	-	Cphamn1_1305	-	DNA polymerase III, epsilon subunit
1247	 50.13	0	1420158..1420943	-	261	189500247	-	Cphamn1_1306	-	Methyltransferase type 11
1248	 44.10	-1	1421044..1421238	-	64	189500248	-	Cphamn1_1307	-	hypothetical protein
1249	 53.36	+1	1421571..1422863	+	430	189500249	-	Cphamn1_1308	-	Rhodanese domain protein
1250	 52.34	0	1422864..1423868	+	334	189500250	-	Cphamn1_1309	-	methyltransferase
1251	 48.29	0	1424010..1424945	+	311	189500251	-	Cphamn1_1310	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
1252	 47.02	0	1425075..1425359	+	94	189500252	-	Cphamn1_1311	-	hypothetical protein
1253	 51.28	0	1425728..1426078	+	116	189500253	-	Cphamn1_1312	-	hypothetical protein
1254	 49.12	0	1426207..1426605	-	132	189500254	-	Cphamn1_1313	-	death-on-curing family protein
1255	 50.45	0	1426602..1426823	-	73	189500255	-	Cphamn1_1314	-	transcriptional regulator/antitoxin, MazE
1256	 43.59	-1	1427144..1427455	-	103	189500256	-	Cphamn1_1315	-	hypothetical protein
1257	 41.06	-1	1427452..1427658	-	68	189500257	-	Cphamn1_1316	-	addiction module component, TIGR02574 family
1258	 54.27	+1	1428020..1429342	-	440	189500258	-	Cphamn1_1317	-	dihydroorotase, multifunctional complex type
1259	 52.64	0	1429368..1430087	-	239	189500259	-	Cphamn1_1318	-	fumarylacetoacetate (FAA) hydrolase
1260	 40.80	-1	1430084..1430284	-	66	189500260	-	Cphamn1_1319	-	hypothetical protein
1261	 53.33	+1	1430459..1431043	+	194	189500261	-	Cphamn1_1320	-	5-formyltetrahydrofolate cyclo-ligase
1262	 46.20	0	1431069..1433198	+	709	189500262	-	Cphamn1_1321	-	Polyphosphate kinase
1263	 49.65	0	1433206..1433634	+	142	189500263	-	Cphamn1_1322	-	sugar-phosphate isomerase, RpiB/LacA/LacB family
1264	 49.42	0	1433771..1434454	+	227	189500264	-	Cphamn1_1323	-	putative signal transduction protein with CBS domains
1265	 52.72	0	1434512..1435744	+	410	189500265	-	Cphamn1_1324	-	amidohydrolase
1266	 46.93	0	1435857..1436981	-	374	189500266	-	Cphamn1_1325	-	fructose-1,6-bisphosphate aldolase, class II
1267	 47.60	0	1437031..1439055	+	674	189500267	-	Cphamn1_1326	-	carboxyl-terminal protease
1268	 48.54	0	1439143..1440543	-	466	189500268	-	Cphamn1_1327	-	argininosuccinate lyase
1269	 50.44	0	1440747..1442207	-	486	189500269	-	Cphamn1_1328	-	hypothetical protein
1270	 48.88	0	1442185..1443252	-	355	189500270	-	Cphamn1_1329	-	hypothetical protein
1271	 49.06	0	1443242..1444735	-	497	189500271	-	Cphamn1_1330	-	hypothetical protein
1272	 48.98	0	1444914..1445840	-	308	189500272	-	Cphamn1_1331	-	hypothetical protein
1273	 52.19	0	1446307..1447515	-	402	189500273	-	Cphamn1_1332	-	Argininosuccinate synthase
1274	 47.43	0	1447528..1447974	-	148	189500274	-	Cphamn1_1333	-	arginine repressor, ArgR
1275	 48.91	0	1447995..1449002	-	335	189500275	-	Cphamn1_1334	-	ornithine carbamoyltransferase
1276	 50.65	0	1449024..1449941	-	305	189500276	-	Cphamn1_1335	-	acetylglutamate kinase
1277	 50.12	0	1449970..1451250	-	426	189500277	-	Cphamn1_1336	-	arginine biosynthesis bifunctional protein ArgJ
1278	 46.61	0	1451539..1452555	-	338	189500278	-	Cphamn1_1337	-	N-acetyl-gamma-glutamyl-phosphate reductase
1279	 52.09	0	1452797..1453729	+	310	189500279	-	Cphamn1_1338	-	phosphate-binding protein, putative
1280	 45.39	0	1453777..1455087	+	436	189500280	-	Cphamn1_1339	-	diguanylate cyclase
1281	 45.02	0	1455125..1456390	+	421	189500281	-	Cphamn1_1340	-	protein of unknown function DUF214
1282	 48.33	0	1456708..1457967	+	419	189500282	-	Cphamn1_1341	-	protein of unknown function DUF214
1283	 44.24	-1	1458057..1458221	-	54	189500283	-	Cphamn1_1342	-	Rubredoxin-type Fe(Cys)4 protein
1284	 47.19	0	1458350..1458811	-	153	189500284	-	Cphamn1_1343	-	GCN5-related N-acetyltransferase
1285	 44.03	-1	1459194..1459679	+	161	189500285	-	Cphamn1_1344	-	Lipocalin family protein
1286	 48.20	0	1459686..1460324	+	212	189500286	-	Cphamn1_1345	-	protein of unknown function UPF0016
1287	 49.50	0	1460297..1462876	-	859	189500287	-	Cphamn1_1346	-	hypothetical protein
1288	 47.23	0	1463365..1464033	+	222	189500288	-	Cphamn1_1347	-	ABC transporter-related protein
1289	 48.05	0	1464030..1464824	+	264	189500289	-	Cphamn1_1348	-	hypothetical protein
1290	 48.76	0	1465049..1465897	-	282	189500290	-	Cphamn1_1349	-	prolipoprotein diacylglyceryl transferase
1291	 49.12	0	1466106..1467302	+	398	189500291	-	Cphamn1_1350	-	ATP-grasp domain protein
1292	 49.75	0	1467363..1469195	+	610	189500292	-	Cphamn1_1351	-	ATP-citrate lyase/succinyl-CoA ligase
1293	 54.36	+1	1469943..1470641	+	232	189500293	-	Cphamn1_1353	-	hypothetical protein
1294	 50.87	0	1471137..1472624	+	495	189500294	-	Cphamn1_1354	-	RNA-directed DNA polymerase
1295	 51.33	0	1472635..1472973	+	112	189500295	-	Cphamn1_1355	-	integrase, catalytic region
1296	 48.60	0	1473067..1473531	+	154	189500296	-	Cphamn1_1356	-	hypothetical protein
1297	 47.58	0	1473554..1474360	-	268	189500297	-	Cphamn1_1357	-	Acetolactate decarboxylase
1298	 53.36	+1	1474706..1476103	-	465	189500298	-	Cphamn1_1358	-	hypothetical protein
1299	 45.51	0	1476341..1477120	+	259	189500299	-	Cphamn1_1359	-	putative PAS/PAC sensor protein
1300	 38.94	-2	1477284..1477622	+	112	189500300	-	Cphamn1_1360	-	hypothetical protein
1301	 46.33	0	1477879..1478601	-	240	189500301	-	Cphamn1_1361	-	transposase IS4 family protein
1302	 37.50	-2	1478758..1478997	-	79	189500302	-	Cphamn1_1362	-	hypothetical protein
1303	 56.36	+1	1479349..1480872	+	507	189500303	-	Cphamn1_1363	-	Integrase catalytic region
1304	 53.52	+1	1480865..1481602	+	245	189500304	-	Cphamn1_1364	-	IstB domain protein ATP-binding protein
1305	 38.89	-2	1481817..1481960	+	47	189500305	-	Cphamn1_1365	-	hypothetical protein
1306	 46.70	0	1482251..1482826	+	191	189500306	-	Cphamn1_1366	-	RNA polymerase, sigma-24 subunit, ECF subfamily
1307	 51.22	0	1482798..1483289	+	163	189500307	-	Cphamn1_1367	-	putative transmembrane anti-sigma factor
1308	 46.58	0	1483437..1483904	+	155	189500308	-	Cphamn1_1368	-	hypothetical protein
1309	 43.48	-1	1483972..1484592	-	206	189500309	-	Cphamn1_1369	-	Carbonate dehydratase
1310	 50.52	0	1484977..1485843	+	288	189500310	-	Cphamn1_1370	-	lipoic acid synthetase
1311	 45.63	0	1485870..1486430	+	186	189500311	-	Cphamn1_1371	-	hypothetical protein
1312	 50.14	0	1486560..1487267	+	235	189500312	-	Cphamn1_1372	-	NAD-dependent epimerase/dehydratase
1313	 48.14	0	1487543..1488400	-	285	189500313	-	Cphamn1_1373	-	short-chain dehydrogenase/reductase SDR
1314	 47.94	0	1488552..1489619	-	355	189500314	-	Cphamn1_1374	-	ferredoxin
1315	 58.59	+2	1489729..1489926	-	65	189500315	-	Cphamn1_1375	-	hypothetical protein
1316	 51.44	0	1490275..1493979	+	1234	189500316	-	Cphamn1_1376	-	5-oxoprolinase (ATP-hydrolyzing)
48.93	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.