IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides BS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.93 STD DEV: 4.12
Chlorobium phaeobacteroides BS1, complete genome - 1..2736403
2469 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1100	 49.82	0	1240947..1243178	+	743	189500100	-	Cphamn1_1151	-	hypothetical protein
1101	 58.21	+2	1243682..1244083	-	133	189500101	-	Cphamn1_1153	-	hypothetical protein
1102	 51.85	0	1244070..1244339	-	89	189500102	-	Cphamn1_1154	-	transcriptional regulator, AbrB family
1103	 32.29	-2	1244729..1244824	+	31	189500103	-	Cphamn1_1155	-	hypothetical protein
1104	 53.36	+1	1245054..1246451	-	465	189500104	-	Cphamn1_1156	-	hypothetical protein
1105	 37.58	-2	1247544..1248626	+	360	189500105	-	Cphamn1_1158	-	HNH endonuclease
1106	 47.23	0	1248630..1249658	+	342	189500106	-	Cphamn1_1159	-	hypothetical protein
1107	 41.27	-1	1250190..1250441	+	83	189500107	-	Cphamn1_1160	-	putative addiction module antidote protein, CopG/Arc/MetJ family
1108	 42.86	-1	1250434..1250748	+	104	189500108	-	Cphamn1_1161	-	plasmid stabilization system
1109	 51.58	0	1251046..1252185	+	379	189500109	-	Cphamn1_1163	-	glucose sorbosone dehydrogenase
1110	 48.04	0	1252539..1253177	-	212	189500110	-	Cphamn1_1165	-	hypothetical protein
1111	 53.76	+1	1253477..1254328	-	283	189500111	-	Cphamn1_1166	-	UspA domain protein
1112	 52.58	0	1254341..1255831	-	496	189500112	-	Cphamn1_1167	-	sulphate transporter
1113	 54.98	+1	1256475..1257167	-	230	189500113	-	Cphamn1_1168	-	peptidase membrane zinc metallopeptidase putative
1114	 50.88	0	1257409..1258713	+	434	189500114	-	Cphamn1_1169	-	protein of unknown function DUF107
1115	 49.40	0	1258713..1259459	+	248	189500115	-	Cphamn1_1170	-	band 7 protein
1116	 49.13	0	1259508..1259969	+	153	189500116	-	Cphamn1_1171	-	UspA domain protein
1117	 50.10	0	1259950..1260957	-	335	189500117	-	Cphamn1_1172	-	LAO/AO transport system ATPase
1118	 51.82	0	1260990..1264310	-	1106	189500118	-	Cphamn1_1173	-	methylmalonyl-CoA mutase, large subunit
1119	 50.59	0	1264334..1266118	-	594	189500119	-	Cphamn1_1174	-	acetyl-CoA carboxylase alpha subunit-like protein
1120	 46.17	0	1266135..1266539	-	134	189500120	-	Cphamn1_1175	-	methylmalonyl-CoA epimerase
1121	 51.85	0	1266536..1268431	-	631	189500121	-	Cphamn1_1176	-	AMP-dependent synthetase and ligase
1122	 46.89	0	1268616..1269404	-	262	189500122	-	Cphamn1_1177	-	dimethyladenosine transferase
1123	 50.91	0	1269477..1270460	+	327	189500123	-	Cphamn1_1178	-	Transketolase central region
1124	 52.68	0	1270548..1270883	+	111	189500124	-	Cphamn1_1179	-	hypothetical protein
1125	 52.52	0	1270892..1271506	+	204	189500125	-	Cphamn1_1180	-	recombination protein RecR
1126	 49.86	0	1271577..1272956	+	459	189500126	-	Cphamn1_1181	-	Carotene 7,8-desaturase
1127	 46.34	0	1273456..1274301	+	281	189500127	-	Cphamn1_1182	-	putative glycosyltransferase
1128	 53.54	+1	1274496..1275089	+	197	189500128	-	Cphamn1_1183	-	hypothetical protein
1129	 53.05	0	1276087..1277232	-	381	189500129	-	Cphamn1_1184	-	Cyclopropane-fatty-acyl-phospholipid synthase
1130	 55.52	+1	1277398..1278357	-	319	189500130	-	Cphamn1_1185	-	aldo/keto reductase
1131	 50.00	0	1278457..1280058	-	533	189500131	-	Cphamn1_1186	-	peptide chain release factor 3
1132	 53.25	+1	1280293..1281939	+	548	189500132	-	Cphamn1_1187	-	phosphoglucomutase, alpha-D-glucose phosphate-specific
1133	 44.04	-1	1282162..1282731	+	189	189500133	-	Cphamn1_1188	-	Inorganic diphosphatase
1134	 52.39	0	1282822..1284222	+	466	189500134	-	Cphamn1_1189	-	fumarate hydratase, class II
1135	 48.99	0	1284398..1285291	+	297	189500135	-	Cphamn1_1190	-	protein of unknown function DUF344
1136	 51.21	0	1285700..1287892	+	730	189500136	-	Cphamn1_1191	-	anaerobic ribonucleoside-triphosphate reductase
1137	 48.05	0	1287889..1288656	+	255	189500137	-	Cphamn1_1192	-	anaerobic ribonucleoside-triphosphate reductase activating protein
1138	 51.29	0	1288716..1289567	-	283	189500138	-	Cphamn1_1193	-	modD protein
1139	 52.41	0	1290365..1290883	+	172	189500139	-	Cphamn1_1194	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family
1140	 47.32	0	1291053..1292939	+	628	189500140	-	Cphamn1_1195	-	heat shock protein Hsp90
1141	 49.65	0	1292993..1293850	+	285	189500141	-	Cphamn1_1196	-	protein of unknown function DUF125 transmembrane
1142	 50.28	0	1293847..1295439	-	530	189500142	-	Cphamn1_1197	-	hypothetical protein
1143	 45.73	0	1295629..1296096	+	155	189500143	-	Cphamn1_1198	-	UspA domain protein
1144	 46.89	0	1296141..1296413	+	90	189500144	-	Cphamn1_1199	-	sodium pump decarboxylase, gamma subunit
1145	 50.55	0	1296485..1298314	+	609	189500145	-	Cphamn1_1200	-	biotin/lipoyl attachment domain-containing protein
1146	 48.61	0	1298458..1300008	+	516	189500146	-	Cphamn1_1201	-	sodium ion-translocating decarboxylase, beta subunit
1147	 46.75	0	1300067..1301266	-	399	189500147	-	Cphamn1_1202	-	internalin-related protein
1148	 49.59	0	1301560..1303983	+	807	189500148	-	Cphamn1_1203	-	Kojibiose phosphorylase
1149	 50.14	0	1303943..1305031	+	362	189500149	-	Cphamn1_1204	-	glycosyl transferase group 1
1150	 48.79	0	1308806..1309135	+	109	189500150	-	Cphamn1_1206	-	thioredoxin
1151	 48.50	0	1309235..1310170	+	311	189500151	-	Cphamn1_1207	-	thioredoxin reductase
1152	 38.60	-2	1311817..1311930	+	37	189500152	-	Cphamn1_1209	-	hypothetical protein
1153	 45.66	0	1311970..1312188	+	72	189500153	-	Cphamn1_1210	-	hypothetical protein
1154	 47.27	0	1312649..1313545	-	298	189500154	-	Cphamn1_1211	-	hypothetical protein
1155	 45.26	0	1314286..1314654	+	122	189500155	-	Cphamn1_1212	-	hypothetical protein
1156	 49.16	0	1314644..1315294	-	216	189500156	-	Cphamn1_1213	-	tRNA guanosine-2'-O-methyltransferase
1157	 48.22	0	1315437..1318223	+	928	189500157	-	Cphamn1_1214	-	hypothetical protein
1158	 46.48	0	1318375..1319454	+	359	189500158	-	Cphamn1_1215	-	metallophosphoesterase
1159	 46.53	0	1319761..1320669	+	302	189500159	-	Cphamn1_1216	-	hypothetical protein
1160	 50.07	0	1320822..1323599	+	925	189500160	-	Cphamn1_1217	-	surface antigen (D15)
1161	 45.36	0	1323743..1324840	+	365	189500161	-	Cphamn1_1218	-	putative adenylate/guanylate cyclase
1162	 44.89	0	1324847..1326040	-	397	189500162	-	Cphamn1_1219	-	metal dependent phosphohydrolase
1163	 41.54	-1	1326118..1326312	-	64	189500163	-	Cphamn1_1220	-	hypothetical protein
1164	 54.30	+1	1326360..1327184	+	274	189500164	-	Cphamn1_1221	-	phosphoesterase PA-phosphatase related
1165	 50.53	0	1327260..1327922	-	220	189500165	-	Cphamn1_1222	-	HAD-superfamily hydrolase, subfamily IA, variant 1
1166	 48.48	0	1327919..1328578	-	219	189500166	-	Cphamn1_1223	-	Methyltransferase type 12
1167	 52.06	0	1328635..1330092	-	485	189500167	-	Cphamn1_1224	-	hypothetical protein
1168	 48.00	0	1330575..1331426	+	283	189500168	-	Cphamn1_1225	-	phospholipid/glycerol acyltransferase
1169	 50.45	0	1331414..1332073	+	219	189500169	-	Cphamn1_1226	-	hypothetical protein
1170	 46.03	0	1332141..1332392	+	83	189500170	-	Cphamn1_1227	-	hypothetical protein
1171	 50.91	0	1332565..1333668	+	367	189500171	-	Cphamn1_1228	-	hypothetical protein
1172	 49.88	0	1333844..1334659	+	271	189500172	-	Cphamn1_1229	-	phosphate binding protein
1173	 46.94	0	1334784..1336010	+	408	189500173	-	Cphamn1_1230	-	ABC-type phosphate transport system periplasmic component-like protein
1174	 47.87	0	1336164..1337009	+	281	189500174	-	Cphamn1_1231	-	phosphate ABC transporter, ATPase subunit
1175	 50.04	0	1337033..1338421	+	462	189500175	-	Cphamn1_1232	-	phosphate ABC transporter, inner membrane subunit PstC
1176	 49.20	0	1338414..1339724	+	436	189500176	-	Cphamn1_1233	-	phosphate ABC transporter, inner membrane subunit PstA
1177	 50.17	0	1339858..1341021	+	387	189500177	-	Cphamn1_1234	-	phosphate ABC transporter, inner membrane subunit PstC
1178	 48.85	0	1341046..1342392	+	448	189500178	-	Cphamn1_1235	-	phosphate ABC transporter, inner membrane subunit PstA
1179	 44.83	0	1342398..1343258	+	286	189500179	-	Cphamn1_1236	-	phosphate ABC transporter, ATPase subunit
1180	 44.98	0	1343291..1343977	+	228	189500180	-	Cphamn1_1237	-	phosphate uptake regulator, PhoU
1181	 47.22	0	1344227..1344982	+	251	189500181	-	Cphamn1_1238	-	phosphate uptake regulator, PhoU
1182	 44.85	0	1345133..1345540	+	135	189500182	-	Cphamn1_1239	-	hypothetical protein
1183	 47.39	0	1345527..1346828	+	433	189500183	-	Cphamn1_1240	-	hypothetical protein
1184	 53.35	+1	1346825..1348063	+	412	189500184	-	Cphamn1_1241	-	pentapeptide repeat protein
1185	 49.88	0	1348179..1349042	+	287	189500185	-	Cphamn1_1242	-	glycosyl transferase family 2
1186	 50.38	0	1349295..1349558	+	87	189500186	-	Cphamn1_1243	-	hypothetical protein
1187	 52.39	0	1349607..1350881	+	424	189500187	-	Cphamn1_1244	-	hypothetical protein
1188	 51.21	0	1351319..1351648	+	109	189500188	-	Cphamn1_1245	-	hypothetical protein
1189	 43.42	-1	1351658..1352539	+	293	189500189	-	Cphamn1_1246	-	DNA methylase N-4/N-6 domain protein
1190	 44.05	-1	1352499..1353254	+	251	189500190	-	Cphamn1_1247	-	conserved hypothetical cytosolic protein
1191	 58.89	+2	1354561..1354740	+	59	189500191	-	Cphamn1_1248	-	hypothetical protein
1192	 39.70	-2	1354785..1355318	+	177	189500192	-	Cphamn1_1249	-	hypothetical protein
1193	 46.38	0	1355547..1358099	+	850	189500193	-	Cphamn1_1250	-	CRISPR-associated protein, Csm1 family
1194	 50.97	0	1358117..1358734	-	205	189500194	-	Cphamn1_1251	-	transposase
1195	 49.58	0	1358776..1359249	-	157	189500195	-	Cphamn1_1252	-	transposase
1196	 38.50	-2	1359334..1359759	+	141	189500196	-	Cphamn1_1253	-	CRISPR-associated protein, Csm2 family
1197	 41.77	-1	1359762..1360496	+	244	189500197	-	Cphamn1_1254	-	CRISPR-associated RAMP protein, Csm3 family
1198	 50.34	0	1360507..1361523	+	338	189500198	-	Cphamn1_1255	-	CRISPR-associated RAMP protein, Csm4 family
1199	 48.12	0	1361532..1362674	+	380	189500199	-	Cphamn1_1256	-	CRISPR-associated RAMP protein, Csm5 family
48.93	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.