IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides BS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.93 STD DEV: 4.12
Chlorobium phaeobacteroides BS1, complete genome - 1..2736403
2469 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1010	 37.72	-2	1145138..1145365	+	75	189500010	-	Cphamn1_1058	-	addiction module component, TIGR02574 family
1011	 41.84	-1	1145362..1145643	+	93	189500011	-	Cphamn1_1059	-	plasmid stabilization system
1012	 51.38	0	1145688..1146086	+	132	189500012	-	Cphamn1_1060	-	nitrogenase-associated protein
1013	 45.72	0	1146548..1147645	+	365	189500013	-	Cphamn1_1062	-	DNA binding domain protein, excisionase family
1014	 41.34	-1	1147626..1148399	-	257	189500014	-	Cphamn1_1063	-	Type II site-specific deoxyribonuclease
1015	 48.45	0	1148703..1149284	-	193	189500015	-	Cphamn1_1064	-	pentapeptide repeat protein
1016	 50.84	0	1151299..1154406	+	1035	189500016	-	Cphamn1_1066	-	acriflavin resistance protein
1017	 51.87	0	1154557..1155732	+	391	189500017	-	Cphamn1_1067	-	efflux transporter, RND family, MFP subunit
1018	 53.12	+1	1155756..1158914	+	1052	189500018	-	Cphamn1_1068	-	transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
1019	 52.09	0	1158898..1160358	+	486	189500019	-	Cphamn1_1069	-	RND efflux system, outer membrane lipoprotein, NodT family
1020	 49.60	0	1160443..1160694	+	83	189500020	-	Cphamn1_1070	-	hypothetical protein
1021	 48.52	0	1160736..1161005	+	89	189500021	-	Cphamn1_1071	-	hypothetical protein
1022	 48.29	0	1161026..1163164	-	712	189500022	-	Cphamn1_1072	-	protein of unknown function DUF255
1023	 39.84	-2	1163294..1163416	+	40	189500023	-	Cphamn1_1073	-	hypothetical protein
1024	 46.51	0	1163466..1164338	+	290	189500024	-	Cphamn1_1074	-	peptide methionine sulfoxide reductase
1025	 44.58	-1	1164468..1164716	-	82	189500025	-	Cphamn1_1075	-	hypothetical protein
1026	 49.32	0	1164776..1165144	+	122	189500026	-	Cphamn1_1076	-	Dinitrogenase iron-molybdenum cofactor biosynthesis protein
1027	 59.41	+2	1165266..1165706	-	146	189500027	-	Cphamn1_1077	-	hypothetical protein
1028	 52.66	0	1168069..1168896	+	275	189500028	-	Cphamn1_1079	-	acid phosphatase (Class B)
1029	 56.84	+1	1168927..1169781	-	284	189500029	-	Cphamn1_1080	-	beta-lactamase domain protein
1030	 53.75	+1	1169862..1170434	-	190	189500030	-	Cphamn1_1081	-	surface antigen msp4 family protein
1031	 56.24	+1	1170690..1172060	+	456	189500031	-	Cphamn1_1082	-	transposase IS4 family protein
1032	 37.30	-2	1172355..1172606	+	83	189500032	-	Cphamn1_1083	-	protein of unknown function DUF86
1033	 54.32	+1	1172611..1173639	+	342	189500033	-	Cphamn1_1084	-	zinc-binding alcohol dehydrogenase family protein
1034	 45.40	0	1173659..1174006	-	115	189500034	-	Cphamn1_1085	-	hypothetical protein
1035	 51.40	0	1174097..1174633	-	178	189500035	-	Cphamn1_1086	-	hypothetical protein
1036	 50.32	0	1174842..1175471	-	209	189500036	-	Cphamn1_1087	-	glycosyl transferase family 2
1037	 49.05	0	1175489..1175908	-	139	189500037	-	Cphamn1_1088	-	protein of unknown function UPF0047
1038	 49.60	0	1175905..1176906	-	333	189500038	-	Cphamn1_1089	-	bacteriochlorophyll/chlorophyll synthetase
1039	 54.73	+1	1177120..1177362	+	80	189500039	-	Cphamn1_1090	-	hypothetical protein
1040	 47.31	0	1177448..1177633	-	61	189500040	-	Cphamn1_1091	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
1041	 44.97	0	1177801..1177989	-	62	189500041	-	Cphamn1_1092	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
1042	 48.29	0	1178136..1179098	-	320	189500042	-	Cphamn1_1093	-	PhoH family protein
1043	 46.46	0	1179119..1180108	-	329	189500043	-	Cphamn1_1094	-	ADP-L-glycero-D-manno-heptose-6-epimerase
1044	 42.79	-1	1180391..1180813	-	140	189500044	-	Cphamn1_1095	-	sigma-24 (FecI-like)
1045	 45.81	0	1181119..1182216	+	365	189500045	-	Cphamn1_1096	-	histidinol-phosphate aminotransferase
1046	 44.94	0	1182216..1182758	+	180	189500046	-	Cphamn1_1097	-	tRNA/rRNA methyltransferase (SpoU)
1047	 47.13	0	1182798..1183616	+	272	189500047	-	Cphamn1_1098	-	alpha/beta hydrolase fold
1048	 48.42	0	1183613..1184182	-	189	189500048	-	Cphamn1_1099	-	Aminoacyl-tRNA hydrolase
1049	 55.10	+1	1184342..1184851	-	169	189500049	-	Cphamn1_1100	-	hypothetical protein
1050	 52.57	0	1184964..1187042	-	692	189500050	-	Cphamn1_1101	-	V-type H(+)-translocating pyrophosphatase
1051	 47.56	0	1187275..1188300	-	341	189500051	-	Cphamn1_1102	-	Endonuclease/exonuclease/phosphatase
1052	 48.12	0	1188602..1189000	+	132	189500052	-	Cphamn1_1103	-	hypothetical protein
1053	 44.99	0	1189022..1189450	-	142	189500053	-	Cphamn1_1104	-	protein of unknown function DUF6 transmembrane
1054	 46.13	0	1189549..1190259	+	236	189500054	-	Cphamn1_1105	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1055	 47.89	0	1190286..1190924	+	212	189500055	-	Cphamn1_1106	-	SNARE associated Golgi protein
1056	 50.66	0	1191219..1192130	+	303	189500056	-	Cphamn1_1107	-	Transketolase domain protein
1057	 48.13	0	1192139..1192672	+	177	189500057	-	Cphamn1_1108	-	Protein of unknown function methylase putative
1058	 46.79	0	1192813..1193310	+	165	189500058	-	Cphamn1_1109	-	pantetheine-phosphate adenylyltransferase
1059	 49.71	0	1193333..1194541	+	402	189500059	-	Cphamn1_1110	-	aminotransferase class I and II
1060	 48.28	0	1194642..1195424	+	260	189500060	-	Cphamn1_1111	-	phospholipid/glycerol acyltransferase
1061	 46.79	0	1195518..1196483	+	321	189500061	-	Cphamn1_1112	-	PSP1 domain protein
1062	 48.20	0	1196514..1198625	+	703	189500062	-	Cphamn1_1113	-	methionyl-tRNA synthetase
1063	 49.03	0	1198888..1200129	+	413	189500063	-	Cphamn1_1114	-	hypothetical protein
1064	 48.35	0	1200428..1201546	-	372	189500064	-	Cphamn1_1115	-	Cyclopropane-fatty-acyl-phospholipid synthase
1065	 49.68	0	1201642..1202418	-	258	189500065	-	Cphamn1_1116	-	fatty acid hydroxylase
1066	 41.19	-1	1202611..1203183	-	190	189500066	-	Cphamn1_1117	-	anti-sigma-factor antagonist
1067	 49.02	0	1203295..1204263	-	322	189500067	-	Cphamn1_1118	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1068	 50.30	0	1204263..1204934	-	223	189500068	-	Cphamn1_1119	-	maf protein
1069	 52.15	0	1204916..1206679	-	587	189500069	-	Cphamn1_1120	-	Na+/solute symporter
1070	 47.81	0	1206706..1207617	-	303	189500070	-	Cphamn1_1121	-	PfkB domain protein
1071	 50.58	0	1207657..1209546	-	629	189500071	-	Cphamn1_1122	-	alpha-amylase family protein
1072	 53.13	+1	1209691..1210392	+	233	189500072	-	Cphamn1_1123	-	tRNA pseudouridine synthase A
1073	 49.36	0	1210571..1212361	+	596	189500073	-	Cphamn1_1124	-	Lytic transglycosylase catalytic
1074	 47.28	0	1212585..1213781	+	398	189500074	-	Cphamn1_1125	-	arsenite-activated ATPase ArsA
1075	 50.66	0	1213935..1215002	+	355	189500075	-	Cphamn1_1126	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1076	 45.59	0	1215061..1215264	+	67	189500076	-	Cphamn1_1127	-	hypothetical protein
1077	 47.18	0	1215287..1216420	+	377	189500077	-	Cphamn1_1128	-	hypothetical protein
1078	 48.54	0	1216460..1216630	+	56	189500078	-	Cphamn1_1129	-	hypothetical protein
1079	 53.12	+1	1216695..1217366	-	223	189500079	-	Cphamn1_1130	-	ABC transporter-related protein
1080	 47.23	0	1217363..1218103	-	246	189500080	-	Cphamn1_1131	-	cobalt ABC transporter, inner membrane subunit CbiQ
1081	 52.13	0	1218093..1218539	-	148	189500081	-	Cphamn1_1132	-	hypothetical protein
1082	 51.93	0	1218536..1219132	-	198	189500082	-	Cphamn1_1133	-	cobalamin (vitamin B12) biosynthesis CbiM protein
1083	 53.36	+1	1219132..1219935	-	267	189500083	-	Cphamn1_1134	-	hypothetical protein
1084	 47.47	0	1219970..1220365	-	131	189500084	-	Cphamn1_1135	-	putative transcriptional regulator, CopG family
1085	 49.39	0	1220599..1221258	-	219	189500085	-	Cphamn1_1136	-	hypothetical protein
1086	 46.78	0	1221347..1221688	-	113	189500086	-	Cphamn1_1137	-	nitrogen regulatory protein P-II
1087	 50.94	0	1221711..1223039	-	442	189500087	-	Cphamn1_1138	-	ammonium transporter
1088	 48.20	0	1223431..1223874	+	147	189500088	-	Cphamn1_1139	-	putative anti-sigma regulatory factor, serine/threonine protein kinase
1089	 52.49	0	1224375..1226018	+	547	189500089	-	Cphamn1_1140	-	Glucose-6-phosphate isomerase
1090	 47.98	0	1226000..1226197	-	65	189500090	-	Cphamn1_1141	-	hypothetical protein
1091	 46.48	0	1226561..1226773	+	70	189500091	-	Cphamn1_1142	-	hypothetical protein
1092	 47.01	0	1226813..1227046	+	77	189500092	-	Cphamn1_1143	-	hypothetical protein
1093	 52.41	0	1227068..1228084	-	338	189500093	-	Cphamn1_1144	-	ApbE family lipoprotein
1094	 47.60	0	1228110..1229336	-	408	189500094	-	Cphamn1_1145	-	putative transcriptional regulator, TetR family
1095	 39.15	-2	1229646..1232894	+	1082	189500095	-	Cphamn1_1146	-	helicase domain protein
1096	 37.25	-2	1232918..1233556	+	212	189500096	-	Cphamn1_1147	-	hypothetical protein
1097	 39.53	-2	1233582..1235516	+	644	189500097	-	Cphamn1_1148	-	Site-specific DNA-methyltransferase (adenine-specific)
1098	 38.70	-2	1235518..1238592	+	1024	189500098	-	Cphamn1_1149	-	type III restriction protein res subunit
1099	 33.62	-2	1238801..1240864	+	687	189500099	-	Cphamn1_1150	-	protein of unknown function DUF262
1100	 49.82	0	1240947..1243178	+	743	189500100	-	Cphamn1_1151	-	hypothetical protein
1101	 58.21	+2	1243682..1244083	-	133	189500101	-	Cphamn1_1153	-	hypothetical protein
1102	 51.85	0	1244070..1244339	-	89	189500102	-	Cphamn1_1154	-	transcriptional regulator, AbrB family
1103	 32.29	-2	1244729..1244824	+	31	189500103	-	Cphamn1_1155	-	hypothetical protein
1104	 53.36	+1	1245054..1246451	-	465	189500104	-	Cphamn1_1156	-	hypothetical protein
1105	 37.58	-2	1247544..1248626	+	360	189500105	-	Cphamn1_1158	-	HNH endonuclease
1106	 47.23	0	1248630..1249658	+	342	189500106	-	Cphamn1_1159	-	hypothetical protein
1107	 41.27	-1	1250190..1250441	+	83	189500107	-	Cphamn1_1160	-	putative addiction module antidote protein, CopG/Arc/MetJ family
1108	 42.86	-1	1250434..1250748	+	104	189500108	-	Cphamn1_1161	-	plasmid stabilization system
1109	 51.58	0	1251046..1252185	+	379	189500109	-	Cphamn1_1163	-	glucose sorbosone dehydrogenase
48.93	MEAN

4.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.