IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.61   STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
884	 50.15	0	1039869..1041575	-	568	119356741	-	Cpha266_0913	-	sulfate transporter
885	 44.56	0	1041943..1042539	+	198	119356742	-	Cpha266_0914	-	yecA family protein
886	 49.94	0	1042629..1043429	+	266	119356743	-	Cpha266_0915	-	hypothetical protein
887	 51.00	0	1043538..1044035	+	165	119356744	-	Cpha266_0916	-	rubrerythrin
888	 47.38	0	1044157..1045914	+	585	119356745	-	Cpha266_0917	-	sodium/hydrogen exchanger
889	 49.20	0	1045924..1046358	-	144	119356746	-	Cpha266_0918	-	protein tyrosine phosphatase
890	 46.21	0	1046517..1047479	+	320	119356747	-	Cpha266_0919	-	alpha/beta hydrolase fold
891	 51.23	0	1047476..1048123	-	215	119356748	-	Cpha266_0920	-	phosphoribosylanthranilate isomerase
892	 51.34	0	1048461..1049876	-	471	119356749	-	Cpha266_0921	-	S-adenosyl-L-homocysteine hydrolase
893	 51.60	0	1050001..1051215	-	404	119356750	-	Cpha266_0922	-	S-adenosylmethionine synthetase
894	 47.85	0	1051458..1052435	-	325	119356751	-	Cpha266_0923	-	nucleotidyl transferase
895	 46.86	0	1052621..1053034	+	137	119356752	-	Cpha266_0924	-	NUDIX hydrolase
896	 50.70	0	1053695..1056106	+	803	119356753	-	Cpha266_0925	-	phenylalanyl-tRNA synthetase beta subunit
897	 46.08	0	1056120..1056425	+	101	119356754	-	Cpha266_0926	-	hypothetical protein
898	 41.67	-1	1056435..1056698	+	87	119356755	-	Cpha266_0927	-	hypothetical protein
899	 49.24	0	1057012..1058589	+	525	119356756	-	Cpha266_0928	-	phosphodiesterase
900	 49.59	0	1058618..1059220	-	200	119356757	hisB	Cpha266_0929	-	imidazoleglycerol-phosphate dehydratase
901	 46.09	0	1059228..1059470	-	80	119356758	-	Cpha266_0930	-	hypothetical protein
902	 49.43	0	1059574..1059921	+	115	119356759	secG	Cpha266_0931	-	preprotein translocase subunit SecG
903	 50.83	0	1060222..1060461	+	79	119356760	-	Cpha266_0932	-	hypothetical protein
904	 56.09	+1	1060626..1073372	+	4248	119356761	-	Cpha266_0933	-	outer membrane autotransporter
905	 49.39	0	1073528..1076647	+	1039	119356762	-	Cpha266_0934	-	type III restriction enzyme, res subunit
906	 40.00	-1	1076649..1077113	+	154	119356763	-	Cpha266_0935	-	hypothetical protein
907	 47.17	0	1077152..1078387	+	411	119356764	-	Cpha266_0936	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
908	 38.54	-2	1078399..1078590	+	63	119356765	-	Cpha266_0937	-	hypothetical protein
909	 43.38	-1	1078602..1079069	+	155	119356766	-	Cpha266_0938	-	helix-turn-helix domain-containing protein
910	 49.42	0	1079143..1081797	+	884	119356767	-	Cpha266_0939	-	DNA methylase N-4/N-6 domain-containing protein
911	 47.48	0	1081970..1083298	+	442	119356768	-	Cpha266_0940	-	permease YjgP/YjgQ family protein
912	 42.50	-1	1083330..1083689	-	119	119356769	-	Cpha266_0941	-	thioesterase superfamily protein
913	 47.85	0	1083694..1085319	-	541	119356770	-	Cpha266_0942	-	hypothetical protein
914	 50.57	0	1085469..1085990	+	173	119356771	-	Cpha266_0943	-	CMP/dCMP deaminase, zinc-binding
915	 51.95	0	1086002..1087102	+	366	119356772	-	Cpha266_0944	-	5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase
916	 49.15	0	1087254..1087664	+	136	119356773	-	Cpha266_0945	-	DoxX family protein
917	 51.04	0	1087658..1088476	+	272	119356774	-	Cpha266_0946	-	ABC transporter related
918	 48.12	0	1088748..1089491	+	247	119356775	-	Cpha266_0947	-	ErfK/YbiS/YcfS/YnhG family protein
919	 48.37	0	1089737..1090933	+	398	119356776	-	Cpha266_0948	-	hypothetical protein
920	 50.70	0	1091152..1091577	+	141	119356777	-	Cpha266_0949	-	hypothetical protein
921	 48.70	0	1091765..1092265	+	166	119356778	-	Cpha266_0950	-	thiol peroxidase (atypical 2-Cys peroxiredoxin)
922	 51.02	0	1092483..1094450	+	655	119356779	-	Cpha266_0951	-	alpha amylase, catalytic region
923	 51.75	0	1094561..1095217	+	218	119356780	-	Cpha266_0952	-	riboflavin synthase subunit alpha
924	 52.57	0	1095218..1096558	+	446	119356781	-	Cpha266_0953	-	recombination factor protein RarA
925	 50.93	0	1096739..1098130	+	463	119356782	-	Cpha266_0954	-	outer membrane efflux protein
926	 50.32	0	1098144..1099085	-	313	119356783	-	Cpha266_0955	-	methyltransferase type 12
927	 48.75	0	1099103..1099621	-	172	119356784	-	Cpha266_0956	-	histidine triad (HIT) protein
928	 43.43	-1	1099999..1100592	+	197	119356785	-	Cpha266_0957	-	hypothetical protein
929	 45.18	0	1100589..1101626	+	345	119356786	-	Cpha266_0958	-	ferrochelatase
930	 46.67	0	1101651..1102250	+	199	119356787	-	Cpha266_0959	-	TPR repeat-containing protein
931	 38.10	-2	1102247..1102498	+	83	119356788	-	Cpha266_0960	-	hypothetical protein
932	 48.15	0	1102703..1103134	+	143	119356789	-	Cpha266_0961	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
933	 50.35	0	1103162..1103731	+	189	119356790	-	Cpha266_0962	-	NADH-quinone oxidoreductase, B subunit
934	 50.10	0	1103777..1104277	+	166	119356791	-	Cpha266_0963	-	NADH (or F420H2) dehydrogenase, subunit C
935	 48.46	0	1104309..1105511	+	400	119356792	-	Cpha266_0964	-	NADH dehydrogenase (ubiquinone)
936	 47.99	0	1105508..1106626	+	372	119356793	-	Cpha266_0965	-	respiratory-chain NADH dehydrogenase, subunit 1
937	 50.22	0	1106669..1107355	+	228	119356794	-	Cpha266_0966	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
938	 47.59	0	1107409..1107927	+	172	119356795	-	Cpha266_0967	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
939	 41.51	-1	1108017..1108334	+	105	119356796	-	Cpha266_0968	-	NADH-ubiquinone oxidoreductase, chain 4L
940	 47.63	0	1108387..1110666	+	759	119356797	-	Cpha266_0969	-	proton-translocating NADH-quinone oxidoreductase, chain L
941	 48.05	0	1110706..1112343	+	545	119356798	-	Cpha266_0970	-	proton-translocating NADH-quinone oxidoreductase, chain M
942	 44.73	0	1112383..1113918	+	511	119356799	-	Cpha266_0971	-	proton-translocating NADH-quinone oxidoreductase, chain N
943	 48.11	0	1114304..1115386	+	360	119356800	-	Cpha266_0972	-	hydrogenase (NiFe) small subunit HydA
944	 48.52	0	1115404..1117122	+	572	119356801	-	Cpha266_0973	-	nickel-dependent hydrogenase, large subunit
945	 46.35	0	1117135..1117818	+	227	119356802	-	Cpha266_0974	-	Ni/Fe-hydrogenase, b-type cytochrome subunit
946	 46.03	0	1117902..1118405	+	167	119356803	-	Cpha266_0975	-	hydrogenase maturation protease
947	 48.33	0	1118466..1119125	-	219	119356804	folE	Cpha266_0976	-	GTP cyclohydrolase I
948	 39.65	-1	1119100..1119558	-	152	119356805	-	Cpha266_0977	-	putative 6-pyruvoyl tetrahydropterin synthase
949	 49.49	0	1120189..1120980	+	263	119356806	-	Cpha266_0979	-	thioredoxin domain-containing protein
950	 47.76	0	1121064..1121666	+	200	119356807	-	Cpha266_0980	-	5 nucleotidase, deoxy, cytosolic type C
951	 47.38	0	1121651..1122832	-	393	119356808	-	Cpha266_0981	-	SAM-dependent methyltransferase
952	 46.07	0	1123130..1123969	+	279	119356809	-	Cpha266_0982	-	hypothetical protein
953	 47.76	0	1124067..1124669	-	200	119356810	-	Cpha266_0983	-	superoxide dismutase
954	 47.75	0	1124824..1125156	+	110	119356811	-	Cpha266_0984	-	hypothetical protein
955	 48.90	0	1125162..1125797	+	211	119356812	-	Cpha266_0985	-	dephospho-CoA kinase
956	 52.88	0	1125792..1126799	-	335	119356813	-	Cpha266_0986	-	putative esterase
957	 46.69	0	1126813..1127718	-	301	119356814	-	Cpha266_0987	-	Sec-independent protein translocase TatC
958	 44.21	0	1128100..1129074	+	324	119356815	-	Cpha266_0988	-	trans-hexaprenyltranstransferase
959	 49.52	0	1129126..1129860	+	244	119356816	-	Cpha266_0989	-	PASTA domain-containing protein
960	 43.86	-1	1129873..1130043	-	56	119356817	-	Cpha266_0990	-	hypothetical protein
961	 41.13	-1	1130127..1130357	-	76	119356818	-	Cpha266_0991	-	hypothetical protein
962	 49.37	0	1130492..1131520	-	342	119356819	-	Cpha266_0992	-	inner-membrane translocator
963	 47.94	0	1131536..1133089	-	517	119356820	-	Cpha266_0993	-	ABC transporter related
964	 47.75	0	1133099..1134055	-	318	119356821	-	Cpha266_0994	-	alcohol dehydrogenase
965	 46.49	0	1134088..1134429	-	113	119356822	-	Cpha266_0995	-	membrane protein of unknown function
966	 52.15	0	1134545..1135915	-	456	119356823	-	Cpha266_0996	-	DNA repair protein RadA
967	 50.38	0	1135922..1136848	-	308	119356824	-	Cpha266_0997	-	methenyltetrahydrofolate cyclohydrolase
968	 49.81	0	1136991..1137506	+	171	119356825	-	Cpha266_0998	-	adenosylcobinamide kinase
969	 50.61	0	1137557..1138621	+	354	119356826	-	Cpha266_0999	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
970	 53.95	+1	1138626..1139372	+	248	119356827	-	Cpha266_1000	-	cobalamin-5'-phosphate synthase
971	 46.81	0	1139574..1139981	+	135	119356828	-	Cpha266_1001	-	OsmC family protein
972	 43.02	-1	1140022..1141002	+	326	119356829	-	Cpha266_1002	-	C4-dicarboxylate transporter/malic acid transport protein
973	 53.90	+1	1141025..1141486	+	153	119356830	-	Cpha266_1003	-	hypothetical protein
974	 50.78	0	1141515..1142666	+	383	119356831	-	Cpha266_1004	-	iron-containing alcohol dehydrogenase
975	 50.40	0	1142892..1143899	+	335	119356832	-	Cpha266_1005	-	hypothetical protein
976	 44.69	0	1144036..1144449	-	137	119356833	-	Cpha266_1006	-	hypothetical protein
977	 47.82	0	1144762..1145334	-	190	119356834	-	Cpha266_1007	-	hypothetical protein
978	 48.94	0	1145647..1147536	+	629	119356835	-	Cpha266_1008	-	Fis family transcriptional regulator
979	 49.48	0	1147552..1148325	+	257	119356836	-	Cpha266_1009	-	hypothetical protein
980	 49.16	0	1148313..1150511	-	732	119356837	-	Cpha266_1010	-	oligopeptidase B
981	 46.51	0	1150722..1152830	-	702	119356838	metG	Cpha266_1011	-	methionyl-tRNA synthetase
982	 46.05	0	1152877..1153851	-	324	119356839	-	Cpha266_1012	-	PSP1 domain-containing protein
983	 44.83	0	1153897..1154670	-	257	119356840	-	Cpha266_1013	-	phospholipid/glycerol acyltransferase
48.61	MEAN

4.51	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.