IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.61   STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
841	 41.03	-1	990867..991100	-	77	119356698	-	Cpha266_0867	-	putative transmembrane anti-sigma factor
842	 41.43	-1	991130..991759	-	209	119356699	-	Cpha266_0868	-	RNA polymerase sigma factor RpoE
843	 47.92	0	992346..992873	-	175	119356700	-	Cpha266_0870	-	transposase
844	 50.12	0	993743..994963	+	406	119356701	-	Cpha266_0872	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
845	 47.75	0	995379..996890	+	503	119356702	-	Cpha266_0874	-	amine oxidase
846	 48.81	0	996912..998132	-	406	119356703	-	Cpha266_0875	-	L-alanine dehydrogenase
847	 45.89	0	998213..998881	-	222	119356704	-	Cpha266_0876	-	ferredoxin
848	 44.87	0	999093..999803	-	236	119356705	-	Cpha266_0877	-	ferredoxin
849	 46.54	0	999908..1003291	-	1127	119356706	-	Cpha266_0878	-	transcription-repair coupling factor
850	 50.54	0	1003324..1004340	+	338	119356707	-	Cpha266_0879	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
851	 50.49	0	1004405..1005115	+	236	119356708	-	Cpha266_0880	-	two component transcriptional regulator
852	 50.37	0	1005105..1006877	+	590	119356709	-	Cpha266_0881	-	multi-sensor signal transduction histidine kinase
853	 49.33	0	1006901..1008163	+	420	119356710	-	Cpha266_0882	-	MscS mechanosensitive ion channel
854	 49.90	0	1008158..1008652	-	164	119356711	-	Cpha266_0883	-	NUDIX hydrolase
855	 41.19	-1	1008735..1009205	+	156	119356712	-	Cpha266_0884	-	redoxin domain-containing protein
856	 49.29	0	1009216..1009779	+	187	119356713	-	Cpha266_0885	-	hypothetical protein
857	 41.67	-1	1010752..1010991	-	79	119356714	-	Cpha266_0886	-	hypothetical protein
858	 41.85	-1	1010966..1011376	-	136	119356715	-	Cpha266_0887	-	hypothetical protein
859	 54.51	+1	1012147..1012401	-	84	119356716	-	Cpha266_0888	-	hypothetical protein
860	 41.17	-1	1012543..1014303	+	586	119356717	-	Cpha266_0889	-	polysaccharide biosynthesis protein
861	 49.00	0	1014359..1015405	+	348	119356718	-	Cpha266_0890	-	hypothetical protein
862	 43.18	-1	1016074..1016997	-	307	119356719	-	Cpha266_0891	-	hypothetical protein
863	 44.00	-1	1016994..1017809	-	271	119356720	-	Cpha266_0892	-	hypothetical protein
864	 41.99	-1	1017939..1019012	-	357	119356721	-	Cpha266_0893	-	pentapeptide repeat-containing protein
865	 40.71	-1	1019069..1019773	-	234	119356722	-	Cpha266_0894	-	hypothetical protein
866	 47.94	0	1019770..1022274	-	834	119356723	-	Cpha266_0895	-	N-6 DNA methylase
867	 47.68	0	1022290..1024827	-	845	119356724	-	Cpha266_0896	-	type III restriction enzyme, res subunit
868	 48.28	0	1025540..1026148	+	202	119356725	-	Cpha266_0897	-	hypothetical protein
869	 42.46	-1	1026183..1027124	+	313	119356726	-	Cpha266_0898	-	hypothetical protein
870	 48.48	0	1027128..1028210	+	360	119356727	-	Cpha266_0899	-	ATPase
871	 50.42	0	1028207..1030687	+	826	119356728	-	Cpha266_0900	-	hypothetical protein
872	 46.56	0	1030888..1031076	+	62	119356729	-	Cpha266_0901	-	HRDC
873	 48.32	0	1031117..1032877	+	586	119356730	-	Cpha266_0902	-	hypothetical protein
874	 51.23	0	1033722..1034330	+	202	119356731	-	Cpha266_0903	-	Cys/Met metabolism pyridoxal-phosphate-dependent enzymes
875	 55.03	+1	1034440..1035195	+	251	119356732	-	Cpha266_0904	-	hypothetical protein
876	 52.98	0	1035232..1035516	-	94	119356733	-	Cpha266_0905	-	hypothetical protein
877	 54.62	+1	1035739..1036842	+	367	119356734	-	Cpha266_0906	-	L-alanine dehydrogenase
878	 51.62	0	1036856..1037380	-	174	119356735	-	Cpha266_0907	-	hypothetical protein
879	 48.63	0	1037599..1037781	+	60	119356736	-	Cpha266_0908	-	hypothetical protein
880	 46.67	0	1038037..1038561	-	174	119356737	-	Cpha266_0909	-	TspO and MBR like proteins
881	 44.88	0	1038614..1038916	-	100	119356738	-	Cpha266_0910	-	hypothetical protein
882	 46.53	0	1038928..1039374	-	148	119356739	-	Cpha266_0911	-	nitrogenase-associated protein
883	 44.57	0	1039525..1039782	+	85	119356740	-	Cpha266_0912	-	hypothetical protein
884	 50.15	0	1039869..1041575	-	568	119356741	-	Cpha266_0913	-	sulfate transporter
885	 44.56	0	1041943..1042539	+	198	119356742	-	Cpha266_0914	-	yecA family protein
886	 49.94	0	1042629..1043429	+	266	119356743	-	Cpha266_0915	-	hypothetical protein
887	 51.00	0	1043538..1044035	+	165	119356744	-	Cpha266_0916	-	rubrerythrin
888	 47.38	0	1044157..1045914	+	585	119356745	-	Cpha266_0917	-	sodium/hydrogen exchanger
889	 49.20	0	1045924..1046358	-	144	119356746	-	Cpha266_0918	-	protein tyrosine phosphatase
890	 46.21	0	1046517..1047479	+	320	119356747	-	Cpha266_0919	-	alpha/beta hydrolase fold
891	 51.23	0	1047476..1048123	-	215	119356748	-	Cpha266_0920	-	phosphoribosylanthranilate isomerase
892	 51.34	0	1048461..1049876	-	471	119356749	-	Cpha266_0921	-	S-adenosyl-L-homocysteine hydrolase
893	 51.60	0	1050001..1051215	-	404	119356750	-	Cpha266_0922	-	S-adenosylmethionine synthetase
894	 47.85	0	1051458..1052435	-	325	119356751	-	Cpha266_0923	-	nucleotidyl transferase
895	 46.86	0	1052621..1053034	+	137	119356752	-	Cpha266_0924	-	NUDIX hydrolase
896	 50.70	0	1053695..1056106	+	803	119356753	-	Cpha266_0925	-	phenylalanyl-tRNA synthetase beta subunit
897	 46.08	0	1056120..1056425	+	101	119356754	-	Cpha266_0926	-	hypothetical protein
898	 41.67	-1	1056435..1056698	+	87	119356755	-	Cpha266_0927	-	hypothetical protein
899	 49.24	0	1057012..1058589	+	525	119356756	-	Cpha266_0928	-	phosphodiesterase
900	 49.59	0	1058618..1059220	-	200	119356757	hisB	Cpha266_0929	-	imidazoleglycerol-phosphate dehydratase
901	 46.09	0	1059228..1059470	-	80	119356758	-	Cpha266_0930	-	hypothetical protein
902	 49.43	0	1059574..1059921	+	115	119356759	secG	Cpha266_0931	-	preprotein translocase subunit SecG
903	 50.83	0	1060222..1060461	+	79	119356760	-	Cpha266_0932	-	hypothetical protein
904	 56.09	+1	1060626..1073372	+	4248	119356761	-	Cpha266_0933	-	outer membrane autotransporter
905	 49.39	0	1073528..1076647	+	1039	119356762	-	Cpha266_0934	-	type III restriction enzyme, res subunit
906	 40.00	-1	1076649..1077113	+	154	119356763	-	Cpha266_0935	-	hypothetical protein
907	 47.17	0	1077152..1078387	+	411	119356764	-	Cpha266_0936	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
908	 38.54	-2	1078399..1078590	+	63	119356765	-	Cpha266_0937	-	hypothetical protein
909	 43.38	-1	1078602..1079069	+	155	119356766	-	Cpha266_0938	-	helix-turn-helix domain-containing protein
910	 49.42	0	1079143..1081797	+	884	119356767	-	Cpha266_0939	-	DNA methylase N-4/N-6 domain-containing protein
911	 47.48	0	1081970..1083298	+	442	119356768	-	Cpha266_0940	-	permease YjgP/YjgQ family protein
912	 42.50	-1	1083330..1083689	-	119	119356769	-	Cpha266_0941	-	thioesterase superfamily protein
913	 47.85	0	1083694..1085319	-	541	119356770	-	Cpha266_0942	-	hypothetical protein
914	 50.57	0	1085469..1085990	+	173	119356771	-	Cpha266_0943	-	CMP/dCMP deaminase, zinc-binding
915	 51.95	0	1086002..1087102	+	366	119356772	-	Cpha266_0944	-	5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase
916	 49.15	0	1087254..1087664	+	136	119356773	-	Cpha266_0945	-	DoxX family protein
917	 51.04	0	1087658..1088476	+	272	119356774	-	Cpha266_0946	-	ABC transporter related
918	 48.12	0	1088748..1089491	+	247	119356775	-	Cpha266_0947	-	ErfK/YbiS/YcfS/YnhG family protein
919	 48.37	0	1089737..1090933	+	398	119356776	-	Cpha266_0948	-	hypothetical protein
920	 50.70	0	1091152..1091577	+	141	119356777	-	Cpha266_0949	-	hypothetical protein
921	 48.70	0	1091765..1092265	+	166	119356778	-	Cpha266_0950	-	thiol peroxidase (atypical 2-Cys peroxiredoxin)
922	 51.02	0	1092483..1094450	+	655	119356779	-	Cpha266_0951	-	alpha amylase, catalytic region
923	 51.75	0	1094561..1095217	+	218	119356780	-	Cpha266_0952	-	riboflavin synthase subunit alpha
924	 52.57	0	1095218..1096558	+	446	119356781	-	Cpha266_0953	-	recombination factor protein RarA
925	 50.93	0	1096739..1098130	+	463	119356782	-	Cpha266_0954	-	outer membrane efflux protein
926	 50.32	0	1098144..1099085	-	313	119356783	-	Cpha266_0955	-	methyltransferase type 12
927	 48.75	0	1099103..1099621	-	172	119356784	-	Cpha266_0956	-	histidine triad (HIT) protein
928	 43.43	-1	1099999..1100592	+	197	119356785	-	Cpha266_0957	-	hypothetical protein
929	 45.18	0	1100589..1101626	+	345	119356786	-	Cpha266_0958	-	ferrochelatase
930	 46.67	0	1101651..1102250	+	199	119356787	-	Cpha266_0959	-	TPR repeat-containing protein
931	 38.10	-2	1102247..1102498	+	83	119356788	-	Cpha266_0960	-	hypothetical protein
932	 48.15	0	1102703..1103134	+	143	119356789	-	Cpha266_0961	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
933	 50.35	0	1103162..1103731	+	189	119356790	-	Cpha266_0962	-	NADH-quinone oxidoreductase, B subunit
934	 50.10	0	1103777..1104277	+	166	119356791	-	Cpha266_0963	-	NADH (or F420H2) dehydrogenase, subunit C
935	 48.46	0	1104309..1105511	+	400	119356792	-	Cpha266_0964	-	NADH dehydrogenase (ubiquinone)
936	 47.99	0	1105508..1106626	+	372	119356793	-	Cpha266_0965	-	respiratory-chain NADH dehydrogenase, subunit 1
937	 50.22	0	1106669..1107355	+	228	119356794	-	Cpha266_0966	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
938	 47.59	0	1107409..1107927	+	172	119356795	-	Cpha266_0967	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
939	 41.51	-1	1108017..1108334	+	105	119356796	-	Cpha266_0968	-	NADH-ubiquinone oxidoreductase, chain 4L
940	 47.63	0	1108387..1110666	+	759	119356797	-	Cpha266_0969	-	proton-translocating NADH-quinone oxidoreductase, chain L
48.61	MEAN

4.51	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.