IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
747	 46.24	0	880550..880921	+	123	119356604	-	Cpha266_0772	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
748	 52.11	0	880996..881208	-	70	119356605	-	Cpha266_0773	-	hypothetical protein
749	 50.61	0	881471..882778	+	435	119356606	-	Cpha266_0774	-	hypothetical protein
750	 57.72	+2	882925..884355	-	476	119356607	-	Cpha266_0775	-	RND efflux system outer membrane lipoprotein
751	 57.01	+1	884345..887512	-	1055	119356608	-	Cpha266_0776	-	hydrophobe/amphiphile efflux-1 (HAE1) family protein
752	 56.28	+1	887540..888694	-	384	119356609	-	Cpha266_0777	-	RND family efflux transporter MFP subunit
753	 55.61	+1	888710..889288	-	192	119356610	-	Cpha266_0778	-	TetR family transcriptional regulator
754	 47.56	0	889498..890706	+	402	119356611	-	Cpha266_0779	-	AAA family ATPase
755	 49.43	0	890924..891451	-	175	119356612	-	Cpha266_0780	-	IstB ATP binding domain-containing protein
756	 43.17	-1	891554..892336	+	260	119356613	-	Cpha266_0781	-	hypothetical protein
757	 43.81	-1	892333..893430	+	365	119356614	-	Cpha266_0782	-	hypothetical protein
758	 50.69	0	893799..895037	-	412	119356615	-	Cpha266_0783	-	AAA family ATPase
759	 42.75	-1	895420..895674	-	84	119356616	-	Cpha266_0784	-	hypothetical protein
760	 46.81	0	895671..896501	-	276	119356617	-	Cpha266_0785	-	hypothetical protein
761	 51.89	0	896835..897125	-	96	119356618	-	Cpha266_0786	-	putative DNA-binding protein
762	 48.08	0	897196..897534	+	112	119356619	-	Cpha266_0787	-	hypothetical protein
763	 52.78	0	897813..901118	+	1101	119356620	-	Cpha266_0788	-	TPR repeat-containing protein
764	 50.65	0	901124..901585	+	153	119356621	-	Cpha266_0789	-	hypothetical protein
765	 50.00	0	901607..901864	+	85	119356622	-	Cpha266_0790	-	hypothetical protein
766	 53.04	0	901876..905067	+	1063	119356623	-	Cpha266_0791	-	TPR repeat-containing protein
767	 56.07	+1	905520..906104	-	194	119356624	-	Cpha266_0793	-	CheB methylesterase
768	 43.54	-1	906625..906771	+	48	119356625	-	Cpha266_0794	-	hypothetical protein
769	 45.95	0	906988..907209	+	73	119356626	-	Cpha266_0795	-	CsbD family protein
770	 46.38	0	907437..907988	-	183	119356627	-	Cpha266_0796	-	NADPH-dependent FMN reductase
771	 47.74	0	907970..908656	-	228	119356628	-	Cpha266_0797	-	hypothetical protein
772	 44.01	-1	908659..909117	-	152	119356629	-	Cpha266_0798	-	ECF subfamily RNA polymerase sigma-24 factor
773	 51.10	0	909944..911080	+	378	119356630	-	Cpha266_0799	-	glycosyl transferase, group 1
774	 50.34	0	911091..912119	-	342	119356631	-	Cpha266_0800	-	cell shape determining protein MreB
775	 50.70	0	912494..913777	+	427	119356632	-	Cpha266_0801	-	histidinol dehydrogenase
776	 50.00	0	913777..914802	+	341	119356633	-	Cpha266_0802	-	queuosine biosynthesis protein
777	 50.80	0	915157..917727	+	856	119356634	-	Cpha266_0803	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
778	 56.25	+1	917886..918077	-	63	119356635	-	Cpha266_0804	-	hypothetical protein
779	 43.25	-1	918156..918407	-	83	119356636	-	Cpha266_0805	-	hypothetical protein
780	 48.77	0	918563..919456	-	297	119356637	-	Cpha266_0806	-	auxin efflux carrier
781	 49.57	0	919840..921114	-	424	119356638	-	Cpha266_0807	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
782	 45.63	0	921332..922819	+	495	119356639	-	Cpha266_0808	-	peptidase M23B
783	 45.05	0	922824..923378	+	184	119356640	-	Cpha266_0809	-	hypothetical protein
784	 45.68	0	923388..924221	+	277	119356641	nadE	Cpha266_0810	-	NAD synthetase
785	 48.37	0	924239..925834	-	531	119356642	-	Cpha266_0811	-	L-aspartate oxidase
786	 45.69	0	925857..926471	-	204	119356643	-	Cpha266_0812	-	DedA family protein
787	 48.72	0	926634..927179	-	181	119356644	-	Cpha266_0813	-	pyruvoyl-dependent arginine decarboxylase
788	 47.37	0	927261..928478	-	405	119356645	-	Cpha266_0814	-	tyrosyl-tRNA synthetase
789	 44.94	0	928494..928967	-	157	119356646	smpB	Cpha266_0815	-	SsrA-binding protein
790	 48.86	0	928975..930462	-	495	119356647	-	Cpha266_0816	-	FAD linked oxidase domain-containing protein
791	 47.62	0	930452..932383	-	643	119356648	-	Cpha266_0817	-	peptidoglycan glycosyltransferase
792	 44.51	0	932387..932878	-	163	119356649	-	Cpha266_0818	-	hypothetical protein
793	 46.26	0	932896..933738	-	280	119356650	-	Cpha266_0819	-	rod shape-determining protein MreC
794	 42.31	-1	934016..934405	+	129	119356651	-	Cpha266_0820	-	chaperonin Cpn10
795	 50.72	0	934487..935458	+	323	119356652	-	Cpha266_0821	-	quinolinate synthetase
796	 47.84	0	935536..936252	+	238	119356653	-	Cpha266_0822	-	hypothetical protein
797	 51.17	0	936297..937367	+	356	119356654	-	Cpha266_0823	-	pentapeptide repeat-containing protein
798	 49.00	0	937370..938122	-	250	119356655	-	Cpha266_0824	-	LmbE family protein
799	 46.97	0	938197..938658	+	153	119356656	-	Cpha266_0825	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
800	 47.47	0	938761..939411	-	216	119356657	-	Cpha266_0826	-	chlorosome envelope protein H
801	 50.64	0	940182..940880	-	232	119356658	-	Cpha266_0827	-	glycosyl transferase family protein
802	 50.16	0	940862..941473	-	203	119356659	-	Cpha266_0828	-	hypothetical protein
803	 50.38	0	941484..942539	-	351	119356660	-	Cpha266_0829	-	radical SAM domain-containing protein
804	 49.85	0	942706..944067	-	453	119356661	-	Cpha266_0830	-	zeta-carotene desaturase
805	 44.00	-1	944647..945171	+	174	119356662	-	Cpha266_0831	-	AsnC family transcriptional regulator
806	 48.44	0	945239..947383	+	714	119356663	-	Cpha266_0832	-	glutamine synthetase, catalytic region
807	 46.90	0	947545..947964	-	139	119356664	-	Cpha266_0833	-	hypothetical protein
808	 43.79	-1	948429..948935	+	168	119356665	-	Cpha266_0834	-	hypothetical protein
809	 51.80	0	948965..949771	+	268	119356666	-	Cpha266_0835	-	pantothenate kinase
810	 50.09	0	949749..950846	-	365	119356667	-	Cpha266_0836	-	3-dehydroquinate synthase
811	 45.38	0	950866..951438	-	190	119356668	-	Cpha266_0837	-	shikimate kinase
812	 51.91	0	951556..953751	-	731	119356669	-	Cpha266_0838	-	RecD/TraA family helicase
813	 56.42	+1	953988..954719	+	243	119356670	-	Cpha266_0839	-	glutamine amidotransferase
814	 50.47	0	954802..960408	-	1868	119356671	-	Cpha266_0840	-	ribosome assembly protein 4 (RSA4)
815	 52.47	0	960545..962368	-	607	119356672	-	Cpha266_0841	-	ABC transporter related
816	 51.04	0	962365..964149	-	594	119356673	-	Cpha266_0842	-	ABC transporter related
817	 48.06	0	964638..966056	+	472	119356674	-	Cpha266_0843	-	membrane protein involved in aromatic hydrocarbon degradation
818	 47.42	0	966215..966874	-	219	119356675	-	Cpha266_0844	-	hypothetical protein
819	 51.93	0	966966..967976	-	336	119356676	-	Cpha266_0845	-	alkylhydroperoxidase
820	 51.96	0	968010..969620	-	536	119356677	-	Cpha266_0846	-	alpha-isopropylmalate/homocitrate synthase family transferase
821	 49.38	0	969620..970186	-	188	119356678	-	Cpha266_0847	-	3-isopropylmalate dehydratase, small subunit
822	 54.40	+1	970211..971506	-	431	119356679	-	Cpha266_0848	-	homoaconitate hydratase family protein
823	 51.91	0	971513..973084	-	523	119356680	-	Cpha266_0849	-	2-isopropylmalate synthase
824	 52.03	0	973107..974165	-	352	119356681	-	Cpha266_0850	-	3-isopropylmalate dehydrogenase
825	 51.76	0	974184..975176	-	330	119356682	-	Cpha266_0851	-	ketol-acid reductoisomerase
826	 47.71	0	975215..975694	-	159	119356683	-	Cpha266_0852	-	acetolactate synthase 3 regulatory subunit
827	 50.41	0	975704..977425	-	573	119356684	-	Cpha266_0853	-	acetolactate synthase, large subunit
828	 53.30	+1	977433..979130	-	565	119356685	-	Cpha266_0854	-	dihydroxy-acid dehydratase
829	 46.24	0	979611..981191	+	526	119356686	-	Cpha266_0855	-	hypothetical protein
830	 45.72	0	981215..981892	+	225	119356687	-	Cpha266_0856	-	MotA/TolQ/ExbB proton channel
831	 46.19	0	981892..982311	+	139	119356688	-	Cpha266_0857	-	biopolymer transport protein ExbD/TolR
832	 47.38	0	982322..983218	+	298	119356689	-	Cpha266_0858	-	Fis family transcriptional regulator
833	 45.82	0	983486..984814	+	442	119356690	-	Cpha266_0859	-	WD40 domain-containing protein
834	 46.62	0	984851..985309	+	152	119356691	-	Cpha266_0860	-	OmpA/MotB domain-containing protein
835	 48.67	0	985420..985908	+	162	119356692	-	Cpha266_0861	-	OmpA/MotB domain-containing protein
836	 42.54	-1	985981..986751	+	256	119356693	-	Cpha266_0862	-	membrane lipoprotein lipid attachment site
837	 40.92	-1	986814..987248	-	144	119356694	-	Cpha266_0863	-	photosystem P840 reaction center protein PscD
838	 46.13	0	987387..989309	-	640	119356695	-	Cpha266_0864	-	chaperone protein DnaK
839	 42.96	-1	989528..989932	-	134	119356696	-	Cpha266_0865	-	heat shock protein Hsp20
840	 45.54	0	990191..990526	-	111	119356697	-	Cpha266_0866	-	ArsR family transcriptional regulator
841	 41.03	-1	990867..991100	-	77	119356698	-	Cpha266_0867	-	putative transmembrane anti-sigma factor
842	 41.43	-1	991130..991759	-	209	119356699	-	Cpha266_0868	-	RNA polymerase sigma factor RpoE
843	 47.92	0	992346..992873	-	175	119356700	-	Cpha266_0870	-	transposase
844	 50.12	0	993743..994963	+	406	119356701	-	Cpha266_0872	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
845	 47.75	0	995379..996890	+	503	119356702	-	Cpha266_0874	-	amine oxidase
846	 48.81	0	996912..998132	-	406	119356703	-	Cpha266_0875	-	L-alanine dehydrogenase
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.