IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.61   STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
22	 48.01	0	29664..30065	+	133	119355879	-	Cpha266_0029	-	thiosulfate-binding protein SoxY
23	 43.43	-1	30107..30403	+	98	119355880	-	Cpha266_0030	-	sulfur oxidation protein SoxZ
24	 48.03	0	30479..30859	+	126	119355881	-	Cpha266_0031	-	sulfide dehydrogenase (flavocytochrome), cytochrome c subunit
25	 50.50	0	30874..32166	+	430	119355882	-	Cpha266_0032	-	sulfide dehydrogenase (flavocytochrome), flavoprotein subunit
26	 50.65	0	32395..34254	+	619	119355883	secD	Cpha266_0033	-	preprotein translocase subunit SecD
27	 46.15	0	34277..35212	+	311	119355884	secF	Cpha266_0034	-	preprotein translocase subunit SecF
28	 45.63	0	35469..36785	+	438	119355885	-	Cpha266_0035	-	PpiC-type peptidyl-prolyl cis-trans isomerase
29	 47.93	0	36774..38705	-	643	119355886	-	Cpha266_0036	-	DNA gyrase subunit B
30	 47.40	0	38787..39170	-	127	119355887	-	Cpha266_0037	-	hypothetical protein
31	 52.75	0	39180..39797	-	205	119355888	-	Cpha266_0038	-	ribonuclease H
32	 50.00	0	39830..40219	-	129	119355889	-	Cpha266_0039	-	hypothetical protein
33	 49.41	0	40727..42424	+	565	119355890	-	Cpha266_0040	-	ribonuclease
34	 52.55	0	42441..43304	+	287	119355891	dapD	Cpha266_0041	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
35	 50.79	0	43349..45067	+	572	119355892	-	Cpha266_0042	-	C-terminal processing peptidase-3
36	 49.72	0	45059..45778	-	239	119355893	-	Cpha266_0043	-	hypothetical protein
37	 51.44	0	45810..46952	-	380	119355894	-	Cpha266_0044	-	geranylgeranyl reductase
38	 51.22	0	46993..48462	-	489	119355895	-	Cpha266_0045	-	glycyl-tRNA synthetase
39	 51.26	0	48703..49020	-	105	119355896	-	Cpha266_0046	-	ATP-dependent Clp protease adaptor protein ClpS
40	 52.98	0	49083..50054	-	323	119355897	-	Cpha266_0047	-	muramoyltetrapeptide carboxypeptidase
41	 46.82	0	50094..50360	-	88	119355898	-	Cpha266_0048	-	H+-transporting two-sector ATPase, delta/epsilon subunit
42	 51.62	0	50376..51764	-	462	119355899	-	Cpha266_0049	-	F0F1 ATP synthase subunit beta
43	 49.54	0	52157..52699	+	180	119355900	-	Cpha266_0050	-	redoxin domain-containing protein
44	 52.95	0	52835..54700	+	621	119355901	-	Cpha266_0051	-	phosphoenolpyruvate carboxykinase
45	 47.60	0	54772..55500	+	242	119355902	-	Cpha266_0052	-	hypothetical protein
46	 53.06	0	55586..57445	-	619	119355903	-	Cpha266_0053	-	ATP-dependent DNA helicase RecQ
47	 51.72	0	59048..59395	-	115	119355904	-	Cpha266_0054	-	hypothetical protein
48	 49.92	0	59403..60692	-	429	119355905	-	Cpha266_0055	-	radical SAM domain-containing protein
49	 51.73	0	60768..62186	-	472	119355906	-	Cpha266_0056	-	peptidase M12A, astacin
50	 58.94	+2	62761..65244	+	827	119355907	-	Cpha266_0057	-	hypothetical protein
51	 57.56	+1	65249..66577	+	442	119355908	-	Cpha266_0058	-	protein of unknown function DUF900, hydrolase family protein
52	 50.68	0	66590..67027	-	145	119355909	-	Cpha266_0059	-	SH3 type 3 domain-containing protein
53	 56.72	+1	67352..68095	+	247	119355910	-	Cpha266_0060	-	TetR family transcriptional regulator
54	 55.05	+1	68108..68572	+	154	119355911	-	Cpha266_0061	-	putative transmembrane protein
55	 56.12	+1	68569..69876	+	435	119355912	-	Cpha266_0062	-	NADPH-dependent FMN reductase
56	 55.45	+1	70230..72956	+	908	119355913	-	Cpha266_0063	-	hypothetical protein
57	 53.78	+1	73902..74390	+	162	119355914	-	Cpha266_0064	-	hypothetical protein
58	 40.72	-1	74997..75524	+	175	119355915	-	Cpha266_0065	-	hypothetical protein
59	 35.71	-2	75533..76708	+	391	119355916	-	Cpha266_0066	-	hypothetical protein
60	 45.33	0	76875..77174	+	99	119355917	-	Cpha266_0067	-	hypothetical protein
61	 48.38	0	77474..81076	-	1200	119355918	-	Cpha266_0068	-	hypothetical protein
62	 49.14	0	81122..81469	-	115	119355919	-	Cpha266_0069	-	hypothetical protein
63	 48.68	0	81714..81941	+	75	119355920	-	Cpha266_0070	-	CopG family protein
64	 46.73	0	82008..83015	-	335	119355921	-	Cpha266_0071	-	helix-turn-helix domain-containing protein
65	 44.09	-1	82993..83373	-	126	119355922	-	Cpha266_0072	-	hypothetical protein
66	 51.63	0	83897..85186	+	429	119355923	-	Cpha266_0073	-	DNA methylase N-4/N-6 domain-containing protein
67	 46.89	0	85239..85511	-	90	119355924	-	Cpha266_0074	-	hypothetical protein
68	 46.41	0	85805..86278	-	157	119355925	-	Cpha266_0075	-	hypothetical protein
69	 50.89	0	86782..88353	+	523	119355926	-	Cpha266_0076	-	integrase catalytic subunit
70	 51.25	0	88359..89195	+	278	119355927	-	Cpha266_0077	-	IstB ATP binding domain-containing protein
71	 37.25	-2	89710..91446	-	578	119355928	-	Cpha266_0078	-	hypothetical protein
72	 40.05	-1	91430..94393	-	987	119355929	-	Cpha266_0079	-	histidine kinase
73	 43.91	-1	94386..95501	-	371	119355930	-	Cpha266_0080	-	DNA-cytosine methyltransferase
74	 50.77	0	95816..97117	-	433	119355931	-	Cpha266_0081	-	hypothetical protein
75	 50.28	0	97065..97595	-	176	119355932	-	Cpha266_0082	-	T/G mismatch-specific endonuclease
76	 49.22	0	97588..98865	-	425	119355933	-	Cpha266_0083	-	DNA-cytosine methyltransferase
77	 53.60	+1	99268..100713	-	481	119355934	-	Cpha266_0084	-	hypothetical protein
78	 53.31	+1	100871..101596	-	241	119355935	-	Cpha266_0085	-	4'-phosphopantetheinyl transferase
79	 57.29	+1	102059..102997	-	312	119355936	-	Cpha266_0086	-	hypothetical protein
80	 54.69	+1	103347..104657	+	436	119355937	-	Cpha266_0087	-	major facilitator transporter
81	 53.89	+1	104732..105310	-	192	119355938	-	Cpha266_0088	-	hypothetical protein
82	 49.75	0	105373..105780	-	135	119355939	-	Cpha266_0089	-	Gifsy-1 prophage protein
83	 56.17	+1	106136..106678	+	180	119355940	-	Cpha266_0090	-	methionine-R-sulfoxide reductase
84	 48.62	0	106689..107087	-	132	119355941	-	Cpha266_0091	-	PilT domain-containing protein
85	 48.75	0	107084..107362	-	92	119355942	-	Cpha266_0092	-	virulence associated protein B
86	 56.74	+1	107423..108994	-	523	119355943	-	Cpha266_0093	-	EmrB/QacA family drug resistance transporter
87	 56.74	+1	109147..110133	-	328	119355944	-	Cpha266_0094	-	secretion protein HlyD family protein
88	 53.38	+1	110135..110608	-	157	119355945	-	Cpha266_0095	-	UspA domain-containing protein
89	 54.75	+1	110611..111936	-	441	119355946	-	Cpha266_0096	-	outer membrane efflux protein
90	 53.81	+1	112186..114285	+	699	119355947	-	Cpha266_0097	-	Fis family transcriptional regulator
91	 53.94	+1	114296..115678	-	460	119355948	-	Cpha266_0098	-	hypothetical protein
92	 47.30	0	115662..115976	-	104	119355949	-	Cpha266_0099	-	hypothetical protein
93	 54.26	+1	116027..116800	-	257	119355950	-	Cpha266_0100	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
94	 52.81	0	116807..118783	-	658	119355951	sdhA	Cpha266_0101	-	succinate dehydrogenase flavoprotein subunit
95	 46.50	0	118798..119526	-	242	119355952	-	Cpha266_0102	-	succinate dehydrogenase subunit C
96	 52.83	0	119559..120194	-	211	119355953	-	Cpha266_0103	-	cyclase family protein
97	 49.71	0	120331..120849	+	172	119355954	-	Cpha266_0104	-	hypothetical protein
98	 51.77	0	120911..121306	+	131	119355955	-	Cpha266_0105	-	histidine triad (HIT) protein
99	 54.93	+1	121365..124133	+	922	119355956	-	Cpha266_0106	-	aconitase
100	 52.04	0	124222..124515	+	97	119355957	-	Cpha266_0107	-	FeoA family protein
101	 49.65	0	124512..126650	+	712	119355958	-	Cpha266_0108	-	ferrous iron transport protein B
102	 51.71	0	126637..129036	-	799	119355959	-	Cpha266_0109	-	DNA topoisomerase I
103	 50.93	0	129197..130975	+	592	119355960	-	Cpha266_0110	-	N-acetylmuramoyl-L-alanine amidase
104	 53.09	0	131086..132072	+	328	119355961	-	Cpha266_0111	-	biotin--acetyl-CoA-carboxylase ligase
105	 52.37	0	132085..133098	+	337	119355962	-	Cpha266_0112	-	biotin synthase
106	 54.26	+1	133086..134270	+	394	119355963	-	Cpha266_0113	-	8-amino-7-oxononanoate synthase
107	 53.28	+1	134275..134961	+	228	119355964	-	Cpha266_0114	-	hypothetical protein
108	 53.51	+1	134949..135731	+	260	119355965	-	Cpha266_0115	-	biotin biosynthesis protein BioC
109	 52.44	0	135728..136402	+	224	119355966	bioD	Cpha266_0116	-	dithiobiotin synthetase
110	 55.63	+1	136426..137730	+	434	119355967	-	Cpha266_0117	-	aminotransferase
111	 44.13	0	138482..138694	-	70	119355968	-	Cpha266_0118	-	hypothetical protein
112	 53.15	+1	139074..140627	+	517	119355969	-	Cpha266_0119	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
113	 53.35	+1	140647..143508	+	953	119355970	-	Cpha266_0120	-	formate dehydrogenase
114	 50.68	0	143666..144622	+	318	119355971	-	Cpha266_0121	-	hypothetical protein
115	 46.39	0	144619..145047	+	142	119355972	-	Cpha266_0122	-	hypothetical protein
116	 49.41	0	145415..145924	+	169	119355973	-	Cpha266_0123	-	hypothetical protein
117	 52.08	0	146008..146487	+	159	119355974	-	Cpha266_0124	-	rhodanese domain-containing protein
118	 45.15	0	146655..146891	+	78	119355975	-	Cpha266_0125	-	SirA family protein
119	 52.87	0	147068..148495	+	475	119355976	-	Cpha266_0126	-	hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase
120	 49.40	0	149068..149403	+	111	119355977	-	Cpha266_0127	-	DsrC family protein
121	 50.96	0	149458..150711	+	417	119355978	-	Cpha266_0128	-	sulfite reductase, dissimilatory-type alpha subunit
48.61	MEAN

4.51	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.