IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.61   STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
635	 50.26	0	748982..750547	+	521	119356492	-	Cpha266_0657	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
636	 49.53	0	750621..751583	-	320	119356493	-	Cpha266_0658	-	hypothetical protein
637	 50.80	0	751713..753647	+	644	119356494	-	Cpha266_0659	-	Rieske (2Fe-2S) domain-containing protein
638	 50.34	0	753678..754865	-	395	119356495	-	Cpha266_0660	-	beta-lactamase
639	 47.44	0	754843..755721	-	292	119356496	-	Cpha266_0661	-	hypothetical protein
640	 44.63	0	755743..756477	-	244	119356497	-	Cpha266_0662	-	ABC transporter related
641	 50.69	0	756482..757276	-	264	119356498	-	Cpha266_0663	-	hypothetical protein
642	 46.57	0	757415..758275	-	286	119356499	-	Cpha266_0664	-	phosphotransferase domain-containing protein
643	 50.77	0	758500..759348	-	282	119356500	-	Cpha266_0665	-	undecaprenyl-diphosphatase
644	 51.63	0	759345..760049	-	234	119356501	-	Cpha266_0666	-	Ham1 family protein
645	 52.46	0	760071..760781	-	236	119356502	-	Cpha266_0667	-	pyridoxal phosphate biosynthetic protein PdxJ
646	 51.99	0	761185..763569	+	794	119356503	-	Cpha266_0668	-	Smr protein/MutS2
647	 47.38	0	763754..764401	+	215	119356504	-	Cpha266_0669	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
648	 51.02	0	764391..764882	+	163	119356505	-	Cpha266_0670	-	phosphatidylglycerophosphatase
649	 50.78	0	764861..766792	-	643	119356506	-	Cpha266_0671	-	1-deoxy-D-xylulose-5-phosphate synthase
650	 48.36	0	767007..767432	-	141	119356507	-	Cpha266_0672	-	hypothetical protein
651	 49.67	0	767535..769052	-	505	119356508	-	Cpha266_0673	-	alpha amylase, catalytic region
652	 49.02	0	769234..771438	+	734	119356509	-	Cpha266_0674	-	ATP-dependent DNA helicase PcrA
653	 47.77	0	771476..772507	+	343	119356510	-	Cpha266_0675	-	hypothetical protein
654	 49.40	0	772516..773094	+	192	119356511	-	Cpha266_0676	-	nitroreductase
655	 48.21	0	773124..773708	+	194	119356512	aat	Cpha266_0677	-	leucyl/phenylalanyl-tRNA--protein transferase
656	 45.01	0	773777..775078	+	433	119356513	-	Cpha266_0678	-	arsenite-activated ATPase ArsA
657	 46.26	0	775225..776106	+	293	119356514	-	Cpha266_0679	-	enoyl-[acyl-carrier-protein] reductase [NADH]
658	 49.51	0	776572..778797	+	741	119356515	-	Cpha266_0680	-	isocitrate dehydrogenase, NADP-dependent
659	 45.61	0	778942..779568	-	208	119356516	-	Cpha266_0681	-	hypothetical protein
660	 45.39	0	779681..780244	-	187	119356517	-	Cpha266_0682	-	vir region protein
661	 49.17	0	780644..781123	-	159	119356518	-	Cpha266_0683	-	hypothetical protein
662	 47.74	0	781473..782381	-	302	119356519	-	Cpha266_0684	-	pirin domain-containing protein
663	 47.30	0	782628..783443	+	271	119356520	-	Cpha266_0685	-	metallophosphoesterase
664	 49.25	0	783597..784595	-	332	119356521	-	Cpha266_0686	-	fructose-1,6-bisphosphatase
665	 47.30	0	784797..786521	+	574	119356522	-	Cpha266_0687	-	single-stranded-DNA-specific exonuclease RecJ
666	 45.10	0	786493..787410	-	305	119356523	-	Cpha266_0688	-	hypothetical protein
667	 48.03	0	787397..788335	-	312	119356524	-	Cpha266_0689	-	glycosyl transferase family protein
668	 49.64	0	788344..789888	-	514	119356525	-	Cpha266_0690	-	glycosyl transferase family protein
669	 47.28	0	789863..790486	-	207	119356526	-	Cpha266_0691	-	phosphoesterase, PA-phosphatase related
670	 49.13	0	790664..791530	+	288	119356527	-	Cpha266_0692	-	formyltetrahydrofolate deformylase
671	 50.37	0	791619..792557	+	312	119356528	-	Cpha266_0693	-	cation diffusion facilitator family transporter
672	 47.62	0	793071..793595	+	174	119356529	-	Cpha266_0694	-	Lipocalin family protein
673	 49.30	0	793695..794120	+	141	119356530	-	Cpha266_0695	-	hypothetical protein
674	 49.86	0	794138..795196	-	352	119356531	-	Cpha266_0696	-	coenzyme F420 hydrogenase/dehydrogenase beta subunit
675	 55.48	+1	795299..797023	-	574	119356532	-	Cpha266_0697	-	ABC transporter, transmembrane region, type 1
676	 53.45	+1	797020..798759	-	579	119356533	-	Cpha266_0698	-	ABC transporter, transmembrane region, type 1
677	 47.63	0	799097..800110	-	337	119356534	-	Cpha266_0699	-	cytochrome d ubiquinol oxidase, subunit II
678	 48.08	0	800128..801483	-	451	119356535	-	Cpha266_0700	-	cytochrome bd ubiquinol oxidase, subunit I
679	 51.36	0	801793..802857	-	354	119356536	-	Cpha266_0701	-	translation initiation factor 2B subunit I
680	 50.73	0	802880..803701	-	273	119356537	-	Cpha266_0702	-	purine nucleoside phosphorylase
681	 50.87	0	803869..804558	-	229	119356538	-	Cpha266_0703	-	alanine racemase domain-containing protein
682	 48.89	0	804567..805061	-	164	119356539	-	Cpha266_0704	-	peptidyl-prolyl cis-trans isomerase, cyclophilin type
683	 48.46	0	805090..805770	-	226	119356540	-	Cpha266_0705	-	TPR repeat-containing protein
684	 50.91	0	805957..806724	-	255	119356541	-	Cpha266_0706	-	TatD family hydrolase
685	 44.38	0	806714..807220	-	168	119356542	-	Cpha266_0707	-	signal peptidase II
686	 48.31	0	807274..808161	-	295	119356543	-	Cpha266_0708	-	shikimate dehydrogenase
687	 46.57	0	808188..809585	-	465	119356544	-	Cpha266_0709	-	TPR repeat-containing protein
688	 48.68	0	809697..811592	-	631	119356545	-	Cpha266_0710	-	excinuclease ABC subunit C
689	 48.44	0	811733..811957	-	74	119356546	-	Cpha266_0711	-	hypothetical protein
690	 49.62	0	811985..813562	-	525	119356547	-	Cpha266_0712	-	major facilitator transporter
691	 47.72	0	813638..814075	-	145	119356548	-	Cpha266_0713	-	UspA domain-containing protein
692	 50.62	0	814523..815656	-	377	119356549	-	Cpha266_0714	-	hypothetical protein
693	 50.12	0	817268..818488	+	406	119356550	-	Cpha266_0716	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
694	 51.08	0	818626..819132	+	168	119356551	-	Cpha266_0717	-	NUDIX hydrolase
695	 48.06	0	819658..820533	-	291	119356552	-	Cpha266_0718	-	hypothetical protein
696	 52.21	0	820575..821501	-	308	119356553	pyrB	Cpha266_0719	-	aspartate carbamoyltransferase catalytic subunit
697	 49.21	0	821705..822082	+	125	119356554	-	Cpha266_0720	-	hydrogenase expression/synthesis, HypA
698	 48.22	0	822088..822900	+	270	119356555	-	Cpha266_0721	-	hydrogenase accessory protein HypB
699	 52.20	0	822870..825191	+	773	119356556	-	Cpha266_0722	-	(NiFe) hydrogenase maturation protein HypF
700	 47.83	0	825252..825527	+	91	119356557	-	Cpha266_0723	-	hydrogenase assembly chaperone hypC/hupF
701	 52.47	0	825541..826632	+	363	119356558	-	Cpha266_0724	-	hydrogenase expression/formation protein HypD
702	 53.26	+1	826635..827678	+	347	119356559	-	Cpha266_0725	-	hydrogenase expression/formation protein HypE
703	 52.91	0	827746..828450	-	234	119356560	-	Cpha266_0726	-	pyridine nucleotide-disulphide oxidoreductase dimerisation region
704	 45.63	0	829084..829506	-	140	119356561	-	Cpha266_0727	-	hypothetical protein
705	 49.60	0	829543..830286	-	247	119356562	-	Cpha266_0728	-	UBA/THIF-type NAD/FAD binding protein
706	 54.18	+1	830283..831347	-	354	119356563	thiH	Cpha266_0729	-	thiamine biosynthesis protein ThiH
707	 54.10	+1	831344..832123	-	259	119356564	thiG	Cpha266_0730	-	thiazole synthase
708	 43.14	-1	832149..832352	-	67	119356565	-	Cpha266_0731	-	thiamine biosynthesis protein ThiS
709	 52.29	0	832530..833732	-	400	119356566	-	Cpha266_0732	-	cystathionine gamma-synthase
710	 49.89	0	834240..834698	+	152	119356567	-	Cpha266_0733	-	MOSC domain-containing protein
711	 48.90	0	834720..835721	-	333	119356568	-	Cpha266_0734	-	GTP cyclohydrolase subunit MoaA
712	 46.79	0	835821..836630	-	269	119356569	-	Cpha266_0735	-	ModE family transcriptional regulator
713	 47.57	0	836881..837189	-	102	119356570	-	Cpha266_0736	-	ferredoxin, 2Fe-2S
714	 51.81	0	837350..838621	-	423	119356571	-	Cpha266_0737	-	nitrogenase cofactor biosynthesis protein NifB
715	 51.00	0	838633..839985	-	450	119356572	-	Cpha266_0738	-	nitrogenase
716	 51.74	0	841361..842740	-	459	119356573	-	Cpha266_0740	-	nitrogenase molybdenum-iron protein beta chain
717	 49.73	0	842766..844406	-	546	119356574	-	Cpha266_0741	-	nitrogenase molybdenum-iron protein alpha chain
718	 50.26	0	844445..844822	-	125	119356575	-	Cpha266_0742	-	nitrogen regulatory protein P-II
719	 48.18	0	844822..845178	-	118	119356576	-	Cpha266_0743	-	nitrogen regulatory protein P-II
720	 52.12	0	845198..846022	-	274	119356577	nifH	Cpha266_0744	-	nitrogenase reductase
721	 46.93	0	846728..848110	-	460	119356578	-	Cpha266_0745	-	cation diffusion facilitator family transporter
722	 47.24	0	848286..849500	-	404	119356579	-	Cpha266_0746	-	S-adenosylmethionine synthetase
723	 44.56	0	850063..850650	+	195	119356580	-	Cpha266_0747	-	hypothetical protein
724	 49.07	0	850718..851092	-	124	119356581	-	Cpha266_0748	-	hypothetical protein
725	 48.18	0	851608..852624	+	338	119356582	-	Cpha266_0749	-	cation diffusion facilitator family transporter
726	 51.84	0	852706..853602	+	298	119356583	-	Cpha266_0750	-	PASTA domain-containing protein
727	 46.46	0	853609..854187	+	192	119356584	-	Cpha266_0751	-	hypothetical protein
728	 54.29	+1	854326..855699	-	457	119356585	-	Cpha266_0752	-	hypothetical protein
729	 47.71	0	855892..856218	+	108	119356586	-	Cpha266_0753	-	hypothetical protein
730	 53.70	+1	856218..856649	+	143	119356587	-	Cpha266_0754	-	ferric uptake regulator family protein
731	 60.66	+2	856814..859012	+	732	119356588	-	Cpha266_0755	-	catalase/peroxidase HPI
732	 53.13	+1	859060..859761	-	233	119356589	-	Cpha266_0756	-	phosphotransferase domain-containing protein
733	 55.80	+1	859844..860947	-	367	119356590	-	Cpha266_0757	-	permease
734	 54.20	+1	861125..861493	-	122	119356591	-	Cpha266_0758	-	ArsR family transcriptional regulator
48.61	MEAN

4.51	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.