IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
602	 48.05	0	701399..701860	+	153	119356459	-	Cpha266_0624	-	tRNA-adenosine deaminase
603	 46.33	0	701917..702939	-	340	119356460	-	Cpha266_0625	-	hypothetical protein
604	 49.37	0	703023..704282	-	419	119356461	-	Cpha266_0626	-	2-nitropropane dioxygenase, NPD
605	 48.79	0	704589..705332	+	247	119356462	-	Cpha266_0627	-	phosphoglycerate mutase
606	 50.85	0	705444..710045	+	1533	119356463	-	Cpha266_0628	-	glutamate synthase (NADH) large subunit
607	 51.29	0	710095..711570	+	491	119356464	gltD	Cpha266_0629	-	glutamate synthase subunit beta
608	 49.26	0	711711..711980	+	89	119356465	-	Cpha266_0630	-	hypothetical protein
609	 47.06	0	712019..713329	+	436	119356466	clpX	Cpha266_0631	-	ATP-dependent protease ATP-binding subunit
610	 52.31	0	713656..713850	+	64	119356467	-	Cpha266_0632	-	hypothetical protein
611	 51.88	0	714404..717913	+	1169	119356468	-	Cpha266_0633	-	helicase domain-containing protein
612	 49.24	0	717910..719418	+	502	119356469	-	Cpha266_0634	-	putative transcriptional regulator
613	 48.99	0	719415..722333	+	972	119356470	-	Cpha266_0635	-	hypothetical protein
614	 50.64	0	722346..725171	+	941	119356471	-	Cpha266_0636	-	hypothetical protein
615	 47.02	0	725269..729615	+	1448	119356472	-	Cpha266_0637	-	hypothetical protein
616	 40.14	-1	729709..730281	+	190	119356473	-	Cpha266_0638	-	hypothetical protein
617	 51.38	0	730830..731660	+	276	119356474	-	Cpha266_0639	-	hypothetical protein
618	 51.06	0	731776..733281	-	501	119356475	-	Cpha266_0640	-	filamentation induced by cAMP protein Fic
619	 49.20	0	733545..734168	+	207	119356476	-	Cpha266_0641	-	putative transcriptional regulator
620	 50.89	0	734898..736469	+	523	119356477	-	Cpha266_0642	-	integrase catalytic subunit
621	 51.25	0	736475..737311	+	278	119356478	-	Cpha266_0643	-	IstB ATP binding domain-containing protein
622	 48.13	0	737689..738519	+	276	119356479	-	Cpha266_0644	-	hypothetical protein
623	 49.29	0	738713..739903	+	396	119356480	-	Cpha266_0645	-	hypothetical protein
624	 51.88	0	740529..740927	+	132	119356481	-	Cpha266_0646	-	hypothetical protein
625	 49.43	0	741053..741313	+	86	119356482	-	Cpha266_0647	-	hypothetical protein
626	 43.76	-1	741297..741785	+	162	119356483	-	Cpha266_0648	-	hypothetical protein
627	 44.07	-1	742217..742570	+	117	119356484	-	Cpha266_0649	-	hypothetical protein
628	 48.55	0	742563..742838	+	91	119356485	-	Cpha266_0650	-	XRE family transcriptional regulator
629	 48.54	0	743330..744118	-	262	119356486	-	Cpha266_0651	-	metallophosphoesterase
630	 50.12	0	744367..745587	+	406	119356487	-	Cpha266_0652	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
631	 49.43	0	745706..746320	+	204	119356488	-	Cpha266_0653	-	hypothetical protein
632	 48.78	0	746317..747255	+	312	119356489	-	Cpha266_0654	-	hypothetical protein
633	 46.79	0	747757..748239	-	160	119356490	-	Cpha266_0655	-	hypothetical protein
634	 41.42	-1	748338..748745	-	135	119356491	-	Cpha266_0656	-	putative virulence protein
635	 50.26	0	748982..750547	+	521	119356492	-	Cpha266_0657	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
636	 49.53	0	750621..751583	-	320	119356493	-	Cpha266_0658	-	hypothetical protein
637	 50.80	0	751713..753647	+	644	119356494	-	Cpha266_0659	-	Rieske (2Fe-2S) domain-containing protein
638	 50.34	0	753678..754865	-	395	119356495	-	Cpha266_0660	-	beta-lactamase
639	 47.44	0	754843..755721	-	292	119356496	-	Cpha266_0661	-	hypothetical protein
640	 44.63	0	755743..756477	-	244	119356497	-	Cpha266_0662	-	ABC transporter related
641	 50.69	0	756482..757276	-	264	119356498	-	Cpha266_0663	-	hypothetical protein
642	 46.57	0	757415..758275	-	286	119356499	-	Cpha266_0664	-	phosphotransferase domain-containing protein
643	 50.77	0	758500..759348	-	282	119356500	-	Cpha266_0665	-	undecaprenyl-diphosphatase
644	 51.63	0	759345..760049	-	234	119356501	-	Cpha266_0666	-	Ham1 family protein
645	 52.46	0	760071..760781	-	236	119356502	-	Cpha266_0667	-	pyridoxal phosphate biosynthetic protein PdxJ
646	 51.99	0	761185..763569	+	794	119356503	-	Cpha266_0668	-	Smr protein/MutS2
647	 47.38	0	763754..764401	+	215	119356504	-	Cpha266_0669	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
648	 51.02	0	764391..764882	+	163	119356505	-	Cpha266_0670	-	phosphatidylglycerophosphatase
649	 50.78	0	764861..766792	-	643	119356506	-	Cpha266_0671	-	1-deoxy-D-xylulose-5-phosphate synthase
650	 48.36	0	767007..767432	-	141	119356507	-	Cpha266_0672	-	hypothetical protein
651	 49.67	0	767535..769052	-	505	119356508	-	Cpha266_0673	-	alpha amylase, catalytic region
652	 49.02	0	769234..771438	+	734	119356509	-	Cpha266_0674	-	ATP-dependent DNA helicase PcrA
653	 47.77	0	771476..772507	+	343	119356510	-	Cpha266_0675	-	hypothetical protein
654	 49.40	0	772516..773094	+	192	119356511	-	Cpha266_0676	-	nitroreductase
655	 48.21	0	773124..773708	+	194	119356512	aat	Cpha266_0677	-	leucyl/phenylalanyl-tRNA--protein transferase
656	 45.01	0	773777..775078	+	433	119356513	-	Cpha266_0678	-	arsenite-activated ATPase ArsA
657	 46.26	0	775225..776106	+	293	119356514	-	Cpha266_0679	-	enoyl-[acyl-carrier-protein] reductase [NADH]
658	 49.51	0	776572..778797	+	741	119356515	-	Cpha266_0680	-	isocitrate dehydrogenase, NADP-dependent
659	 45.61	0	778942..779568	-	208	119356516	-	Cpha266_0681	-	hypothetical protein
660	 45.39	0	779681..780244	-	187	119356517	-	Cpha266_0682	-	vir region protein
661	 49.17	0	780644..781123	-	159	119356518	-	Cpha266_0683	-	hypothetical protein
662	 47.74	0	781473..782381	-	302	119356519	-	Cpha266_0684	-	pirin domain-containing protein
663	 47.30	0	782628..783443	+	271	119356520	-	Cpha266_0685	-	metallophosphoesterase
664	 49.25	0	783597..784595	-	332	119356521	-	Cpha266_0686	-	fructose-1,6-bisphosphatase
665	 47.30	0	784797..786521	+	574	119356522	-	Cpha266_0687	-	single-stranded-DNA-specific exonuclease RecJ
666	 45.10	0	786493..787410	-	305	119356523	-	Cpha266_0688	-	hypothetical protein
667	 48.03	0	787397..788335	-	312	119356524	-	Cpha266_0689	-	glycosyl transferase family protein
668	 49.64	0	788344..789888	-	514	119356525	-	Cpha266_0690	-	glycosyl transferase family protein
669	 47.28	0	789863..790486	-	207	119356526	-	Cpha266_0691	-	phosphoesterase, PA-phosphatase related
670	 49.13	0	790664..791530	+	288	119356527	-	Cpha266_0692	-	formyltetrahydrofolate deformylase
671	 50.37	0	791619..792557	+	312	119356528	-	Cpha266_0693	-	cation diffusion facilitator family transporter
672	 47.62	0	793071..793595	+	174	119356529	-	Cpha266_0694	-	Lipocalin family protein
673	 49.30	0	793695..794120	+	141	119356530	-	Cpha266_0695	-	hypothetical protein
674	 49.86	0	794138..795196	-	352	119356531	-	Cpha266_0696	-	coenzyme F420 hydrogenase/dehydrogenase beta subunit
675	 55.48	+1	795299..797023	-	574	119356532	-	Cpha266_0697	-	ABC transporter, transmembrane region, type 1
676	 53.45	+1	797020..798759	-	579	119356533	-	Cpha266_0698	-	ABC transporter, transmembrane region, type 1
677	 47.63	0	799097..800110	-	337	119356534	-	Cpha266_0699	-	cytochrome d ubiquinol oxidase, subunit II
678	 48.08	0	800128..801483	-	451	119356535	-	Cpha266_0700	-	cytochrome bd ubiquinol oxidase, subunit I
679	 51.36	0	801793..802857	-	354	119356536	-	Cpha266_0701	-	translation initiation factor 2B subunit I
680	 50.73	0	802880..803701	-	273	119356537	-	Cpha266_0702	-	purine nucleoside phosphorylase
681	 50.87	0	803869..804558	-	229	119356538	-	Cpha266_0703	-	alanine racemase domain-containing protein
682	 48.89	0	804567..805061	-	164	119356539	-	Cpha266_0704	-	peptidyl-prolyl cis-trans isomerase, cyclophilin type
683	 48.46	0	805090..805770	-	226	119356540	-	Cpha266_0705	-	TPR repeat-containing protein
684	 50.91	0	805957..806724	-	255	119356541	-	Cpha266_0706	-	TatD family hydrolase
685	 44.38	0	806714..807220	-	168	119356542	-	Cpha266_0707	-	signal peptidase II
686	 48.31	0	807274..808161	-	295	119356543	-	Cpha266_0708	-	shikimate dehydrogenase
687	 46.57	0	808188..809585	-	465	119356544	-	Cpha266_0709	-	TPR repeat-containing protein
688	 48.68	0	809697..811592	-	631	119356545	-	Cpha266_0710	-	excinuclease ABC subunit C
689	 48.44	0	811733..811957	-	74	119356546	-	Cpha266_0711	-	hypothetical protein
690	 49.62	0	811985..813562	-	525	119356547	-	Cpha266_0712	-	major facilitator transporter
691	 47.72	0	813638..814075	-	145	119356548	-	Cpha266_0713	-	UspA domain-containing protein
692	 50.62	0	814523..815656	-	377	119356549	-	Cpha266_0714	-	hypothetical protein
693	 50.12	0	817268..818488	+	406	119356550	-	Cpha266_0716	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
694	 51.08	0	818626..819132	+	168	119356551	-	Cpha266_0717	-	NUDIX hydrolase
695	 48.06	0	819658..820533	-	291	119356552	-	Cpha266_0718	-	hypothetical protein
696	 52.21	0	820575..821501	-	308	119356553	pyrB	Cpha266_0719	-	aspartate carbamoyltransferase catalytic subunit
697	 49.21	0	821705..822082	+	125	119356554	-	Cpha266_0720	-	hydrogenase expression/synthesis, HypA
698	 48.22	0	822088..822900	+	270	119356555	-	Cpha266_0721	-	hydrogenase accessory protein HypB
699	 52.20	0	822870..825191	+	773	119356556	-	Cpha266_0722	-	(NiFe) hydrogenase maturation protein HypF
700	 47.83	0	825252..825527	+	91	119356557	-	Cpha266_0723	-	hydrogenase assembly chaperone hypC/hupF
701	 52.47	0	825541..826632	+	363	119356558	-	Cpha266_0724	-	hydrogenase expression/formation protein HypD
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.