IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
527	 45.36	0	608005..608736	+	243	119356384	-	Cpha266_0547	-	4'-phosphopantetheinyl transferase
528	 45.11	0	609777..610328	-	183	119356385	-	Cpha266_0549	-	hypothetical protein
529	 50.75	0	610511..612514	-	667	119356386	-	Cpha266_0550	-	acetyl-CoA synthetase
530	 47.08	0	612695..615145	-	816	119356387	leuS	Cpha266_0551	-	leucyl-tRNA synthetase
531	 50.75	0	615226..617424	-	732	119356388	-	Cpha266_0552	-	polynucleotide phosphorylase/polyadenylase
532	 51.17	0	617598..618449	-	283	119356389	-	Cpha266_0553	-	pantothenate synthetase
533	 47.76	0	618433..619167	-	244	119356390	-	Cpha266_0554	-	uroporphyrin-III C/tetrapyrrole methyltransferase
534	 48.78	0	619263..620246	+	327	119356391	-	Cpha266_0555	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
535	 51.00	0	620290..622095	+	601	119356392	-	Cpha266_0556	-	signal peptide peptidase A
536	 53.72	+1	622165..623577	-	470	119356393	-	Cpha266_0557	-	hypothetical protein
537	 52.47	0	623904..625460	-	518	119356394	-	Cpha266_0558	-	Mg chelatase, subunit ChlI
538	 51.68	0	625602..628370	-	922	119356395	-	Cpha266_0559	-	phosphoenolpyruvate carboxylase
539	 47.82	0	628707..629348	+	213	119356396	-	Cpha266_0560	-	photosystem P840 reaction center cytochrome c-551
540	 44.44	0	629489..629839	-	116	119356397	-	Cpha266_0561	-	7-cyano-7-deazaguanine reductase
541	 49.72	0	630005..630724	+	239	119356398	-	Cpha266_0562	-	methyltransferase type 12
542	 50.29	0	630721..631581	+	286	119356399	-	Cpha266_0563	-	hypothetical protein
543	 45.29	0	631578..632564	+	328	119356400	-	Cpha266_0564	-	tyrosine recombinase XerC subunit
544	 42.90	-1	632641..632964	+	107	119356401	-	Cpha266_0565	-	hypothetical protein
545	 44.79	0	633049..634017	+	322	119356402	-	Cpha266_0566	-	HPr kinase/phosphorylase
546	 45.81	0	634030..635856	+	608	119356403	-	Cpha266_0567	-	extracellular solute-binding protein
547	 46.07	0	635866..636831	+	321	119356404	-	Cpha266_0568	-	binding-protein-dependent transport systems inner membrane component
548	 47.93	0	636859..637899	+	346	119356405	ruvB	Cpha266_0569	-	Holliday junction DNA helicase B
549	 44.03	-1	637880..639655	+	591	119356406	-	Cpha266_0570	-	TPR repeat-containing protein
550	 48.86	0	639741..643301	-	1186	119356407	-	Cpha266_0571	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
551	 49.14	0	643595..644353	+	252	119356408	-	Cpha266_0572	-	RNA methyltransferase
552	 50.00	0	644478..644861	+	127	119356409	-	Cpha266_0573	-	glycine cleavage system H protein
553	 49.81	0	644897..646231	+	444	119356410	-	Cpha266_0574	-	glycine dehydrogenase subunit 1
554	 48.82	0	646224..647114	-	296	119356411	-	Cpha266_0575	-	dihydrodipicolinate synthase
555	 48.45	0	647180..648886	-	568	119356412	-	Cpha266_0576	-	DNA repair protein RecN
556	 43.43	-1	649264..649461	-	65	119356413	-	Cpha266_0577	-	twin arginine-targeting protein translocase
557	 48.98	0	649572..650210	-	212	119356414	-	Cpha266_0578	-	phosphatidylserine decarboxylase
558	 47.24	0	650316..651293	+	325	119356415	-	Cpha266_0579	-	tRNA(Ile)-lysidine synthetase
559	 46.92	0	651356..652393	-	345	119356416	-	Cpha266_0580	-	hypothetical protein
560	 46.94	0	652406..652846	-	146	119356417	rnhA	Cpha266_0581	-	ribonuclease H
561	 42.92	-1	652925..653143	-	72	119356418	rpmB	Cpha266_0582	-	50S ribosomal protein L28
562	 48.91	0	653217..654179	-	320	119356419	-	Cpha266_0583	-	bacteriochlorophyll/chlorophyll a synthase
563	 51.70	0	654284..655339	-	351	119356420	-	Cpha266_0584	-	anthranilate phosphoribosyltransferase
564	 49.59	0	655461..656555	+	364	119356421	-	Cpha266_0585	-	peptidase M24
565	 49.33	0	656575..656949	+	124	119356422	-	Cpha266_0586	-	CutA1 divalent ion tolerance protein
566	 49.79	0	656942..658108	-	388	119356423	-	Cpha266_0587	-	DNA-directed DNA polymerase
567	 48.03	0	658124..659035	-	303	119356424	-	Cpha266_0588	-	branched-chain amino acid aminotransferase
568	 48.84	0	659232..660437	-	401	119356425	-	Cpha266_0589	-	6-phosphofructokinase
569	 46.90	0	660615..661889	+	424	119356426	-	Cpha266_0590	-	hypothetical protein
570	 49.27	0	661886..662362	-	158	119356427	-	Cpha266_0591	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
571	 45.98	0	662649..663755	+	368	119356428	-	Cpha266_0592	-	hypothetical protein
572	 50.69	0	663774..664718	-	314	119356429	-	Cpha266_0593	-	dihydroorotate oxidase B, catalytic subunit
573	 49.62	0	664816..666927	-	703	119356430	-	Cpha266_0594	-	alpha-glucan phosphorylases
574	 46.14	0	667078..667944	+	288	119356431	-	Cpha266_0595	-	metallophosphoesterase
575	 47.68	0	668001..668495	-	164	119356432	-	Cpha266_0596	-	Ferritin, Dps family protein
576	 41.19	-1	668754..669224	-	156	119356433	-	Cpha266_0597	-	hypothetical protein
577	 52.29	0	669704..670183	+	159	119356434	-	Cpha266_0598	-	hypothetical protein
578	 48.57	0	670143..671999	-	618	119356435	-	Cpha266_0599	-	carbamoyl-phosphate synthase large subunit
579	 47.05	0	672350..673639	+	429	119356436	-	Cpha266_0600	-	3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II
580	 49.96	0	673670..674992	+	440	119356437	-	Cpha266_0601	-	serine hydroxymethyltransferase
581	 47.57	0	675077..676987	-	636	119356438	-	Cpha266_0602	-	DNA primase
582	 46.85	0	677325..678071	+	248	119356439	-	Cpha266_0603	-	MotA/TolQ/ExbB proton channel
583	 44.57	0	678078..678611	+	177	119356440	-	Cpha266_0604	-	hypothetical protein
584	 44.95	0	678613..679137	+	174	119356441	-	Cpha266_0605	-	biopolymer transport protein ExbD/TolR
585	 49.00	0	679216..679968	+	250	119356442	-	Cpha266_0606	-	TonB family protein
586	 43.95	-1	680022..680699	-	225	119356443	-	Cpha266_0607	-	hypothetical protein
587	 41.40	-1	680704..680988	-	94	119356444	-	Cpha266_0608	-	hypothetical protein
588	 46.00	0	680963..682162	-	399	119356445	-	Cpha266_0609	-	acetylornithine aminotransferase
589	 44.29	0	682248..682457	-	69	119356446	-	Cpha266_0610	-	hypothetical protein
590	 46.41	0	682450..683757	-	435	119356447	-	Cpha266_0611	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
591	 50.10	0	683983..684489	-	168	119356448	-	Cpha266_0612	-	hypothetical protein
592	 50.95	0	684476..685003	-	175	119356449	-	Cpha266_0613	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
593	 45.45	0	685133..686551	+	472	119356450	-	Cpha266_0614	-	coproporphyrinogen III oxidase
594	 47.89	0	686612..687751	+	379	119356451	-	Cpha266_0615	-	oxidoreductase domain-containing protein
595	 47.48	0	687763..688080	+	105	119356452	-	Cpha266_0616	-	small multidrug resistance protein
596	 44.56	0	688486..692682	+	1398	119356453	-	Cpha266_0617	-	multi-sensor hybrid histidine kinase
597	 47.83	0	692743..694701	-	652	119356454	-	Cpha266_0618	-	ABC transporter related
598	 48.32	0	695421..696728	+	435	119356455	-	Cpha266_0620	-	outer membrane efflux protein
599	 46.90	0	696754..697689	+	311	119356456	-	Cpha266_0621	-	RND family efflux transporter MFP subunit
600	 49.04	0	697686..699659	+	657	119356457	-	Cpha266_0622	-	ABC transporter related
601	 47.67	0	700083..701261	-	392	119356458	-	Cpha266_0623	-	succinyl-CoA synthetase (ADP-forming) beta subunit
602	 48.05	0	701399..701860	+	153	119356459	-	Cpha266_0624	-	tRNA-adenosine deaminase
603	 46.33	0	701917..702939	-	340	119356460	-	Cpha266_0625	-	hypothetical protein
604	 49.37	0	703023..704282	-	419	119356461	-	Cpha266_0626	-	2-nitropropane dioxygenase, NPD
605	 48.79	0	704589..705332	+	247	119356462	-	Cpha266_0627	-	phosphoglycerate mutase
606	 50.85	0	705444..710045	+	1533	119356463	-	Cpha266_0628	-	glutamate synthase (NADH) large subunit
607	 51.29	0	710095..711570	+	491	119356464	gltD	Cpha266_0629	-	glutamate synthase subunit beta
608	 49.26	0	711711..711980	+	89	119356465	-	Cpha266_0630	-	hypothetical protein
609	 47.06	0	712019..713329	+	436	119356466	clpX	Cpha266_0631	-	ATP-dependent protease ATP-binding subunit
610	 52.31	0	713656..713850	+	64	119356467	-	Cpha266_0632	-	hypothetical protein
611	 51.88	0	714404..717913	+	1169	119356468	-	Cpha266_0633	-	helicase domain-containing protein
612	 49.24	0	717910..719418	+	502	119356469	-	Cpha266_0634	-	putative transcriptional regulator
613	 48.99	0	719415..722333	+	972	119356470	-	Cpha266_0635	-	hypothetical protein
614	 50.64	0	722346..725171	+	941	119356471	-	Cpha266_0636	-	hypothetical protein
615	 47.02	0	725269..729615	+	1448	119356472	-	Cpha266_0637	-	hypothetical protein
616	 40.14	-1	729709..730281	+	190	119356473	-	Cpha266_0638	-	hypothetical protein
617	 51.38	0	730830..731660	+	276	119356474	-	Cpha266_0639	-	hypothetical protein
618	 51.06	0	731776..733281	-	501	119356475	-	Cpha266_0640	-	filamentation induced by cAMP protein Fic
619	 49.20	0	733545..734168	+	207	119356476	-	Cpha266_0641	-	putative transcriptional regulator
620	 50.89	0	734898..736469	+	523	119356477	-	Cpha266_0642	-	integrase catalytic subunit
621	 51.25	0	736475..737311	+	278	119356478	-	Cpha266_0643	-	IstB ATP binding domain-containing protein
622	 48.13	0	737689..738519	+	276	119356479	-	Cpha266_0644	-	hypothetical protein
623	 49.29	0	738713..739903	+	396	119356480	-	Cpha266_0645	-	hypothetical protein
624	 51.88	0	740529..740927	+	132	119356481	-	Cpha266_0646	-	hypothetical protein
625	 49.43	0	741053..741313	+	86	119356482	-	Cpha266_0647	-	hypothetical protein
626	 43.76	-1	741297..741785	+	162	119356483	-	Cpha266_0648	-	hypothetical protein
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.