IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
484	 47.63	0	551964..555503	-	1179	119356341	-	Cpha266_0504	-	chromosome segregation protein SMC
485	 52.85	0	555596..556507	-	303	119356342	-	Cpha266_0505	-	dihydropteroate synthase
486	 51.19	0	556504..557556	-	350	119356343	-	Cpha266_0506	-	peptidase M50
487	 53.33	+1	557735..558184	-	149	119356344	-	Cpha266_0507	-	cytochrome c, putative
488	 48.79	0	558304..559254	-	316	119356345	-	Cpha266_0508	-	methyltransferase type 12
489	 48.08	0	559546..560040	+	164	119356346	-	Cpha266_0509	-	BadM/Rrf2 family transcriptional regulator
490	 53.17	+1	560037..560918	+	293	119356347	-	Cpha266_0510	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
491	 53.09	0	560937..561341	+	134	119356348	-	Cpha266_0511	-	TPR repeat-containing protein
492	 50.28	0	561372..562994	+	540	119356349	-	Cpha266_0512	-	hydroxylamine reductase
493	 48.20	0	563148..563564	+	138	119356350	-	Cpha266_0513	-	NUDIX hydrolase
494	 48.10	0	563847..565085	+	412	119356351	-	Cpha266_0514	-	major facilitator transporter
495	 45.54	0	565197..565802	+	201	119356352	-	Cpha266_0515	-	hypothetical protein
496	 43.98	-1	565905..566627	-	240	119356353	-	Cpha266_0516	-	hypothetical protein
497	 49.36	0	566631..569519	-	962	119356354	-	Cpha266_0517	-	excinuclease ABC subunit A
498	 49.73	0	570003..572825	-	940	119356355	-	Cpha266_0518	-	pyruvate phosphate dikinase
499	 52.27	0	572905..573786	+	293	119356356	-	Cpha266_0519	-	inner-membrane translocator
500	 49.77	0	573778..574434	-	218	119356357	-	Cpha266_0520	-	isoprenoid biosynthesis protein
501	 48.08	0	574763..575257	+	164	119356358	-	Cpha266_0521	-	hypothetical protein
502	 44.58	0	575861..577087	+	408	119356359	-	Cpha266_0522	-	sigma-70, region 4 type 2
503	 50.89	0	577162..577833	+	223	119356360	-	Cpha266_0523	-	hypothetical protein
504	 47.14	0	578072..578578	-	168	119356361	-	Cpha266_0524	-	hypothetical protein
505	 48.25	0	578698..579240	+	180	119356362	-	Cpha266_0525	-	isochorismatase hydrolase
506	 47.85	0	579252..580319	-	355	119356363	-	Cpha266_0526	-	lipid-A-disaccharide synthase
507	 46.34	0	580309..580923	-	204	119356364	-	Cpha266_0527	-	hypothetical protein
508	 51.01	0	581100..582383	+	427	119356365	-	Cpha266_0528	-	phosphoribosylamine--glycine ligase
509	 46.99	0	582406..582837	+	143	119356366	-	Cpha266_0529	-	hypothetical protein
510	 48.75	0	582925..584403	+	492	119356367	-	Cpha266_0530	-	carbamoyl-phosphate synthase large subunit
511	 49.68	0	584409..585185	+	258	119356368	-	Cpha266_0531	-	indole-3-glycerol phosphate synthase
512	 47.75	0	585166..585831	-	221	119356369	-	Cpha266_0532	-	ribulose-5-phosphate 3-epimerase
513	 46.42	0	585881..588112	-	743	119356370	-	Cpha266_0533	-	surface antigen (D15)
514	 45.18	0	588131..588358	-	75	119356371	-	Cpha266_0534	-	hypothetical protein
515	 44.22	0	588391..589134	-	247	119356372	-	Cpha266_0535	-	peptidase M23B
516	 46.43	0	589218..592058	-	946	119356373	-	Cpha266_0536	-	DNA polymerase I
517	 47.02	0	592055..592894	-	279	119356374	-	Cpha266_0537	-	prephenate dehydratase
518	 44.22	0	593014..593766	+	250	119356375	-	Cpha266_0538	-	hypothetical protein
519	 50.53	0	593770..594333	+	187	119356376	-	Cpha266_0539	-	crossover junction endodeoxyribonuclease RuvC
520	 45.23	0	594433..594987	+	184	119356377	-	Cpha266_0540	-	CDP-alcohol phosphatidyltransferase
521	 48.93	0	595389..596792	-	467	119356378	-	Cpha266_0541	-	bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase
522	 46.90	0	596919..598754	-	611	119356379	-	Cpha266_0542	-	ABC-type branched-chain amino acid transport systems periplasmic component-like
523	 48.36	0	598767..599558	-	263	119356380	-	Cpha266_0543	-	inositol-phosphate phosphatase
524	 45.83	0	599791..600270	+	159	119356381	-	Cpha266_0544	-	TspO and MBR like proteins
525	 44.08	-1	600846..601301	+	151	119356382	-	Cpha266_0545	-	hypothetical protein
526	 45.54	0	601546..608001	+	2151	119356383	-	Cpha266_0546	-	amino acid adenylation domain-containing protein
527	 45.36	0	608005..608736	+	243	119356384	-	Cpha266_0547	-	4'-phosphopantetheinyl transferase
528	 45.11	0	609777..610328	-	183	119356385	-	Cpha266_0549	-	hypothetical protein
529	 50.75	0	610511..612514	-	667	119356386	-	Cpha266_0550	-	acetyl-CoA synthetase
530	 47.08	0	612695..615145	-	816	119356387	leuS	Cpha266_0551	-	leucyl-tRNA synthetase
531	 50.75	0	615226..617424	-	732	119356388	-	Cpha266_0552	-	polynucleotide phosphorylase/polyadenylase
532	 51.17	0	617598..618449	-	283	119356389	-	Cpha266_0553	-	pantothenate synthetase
533	 47.76	0	618433..619167	-	244	119356390	-	Cpha266_0554	-	uroporphyrin-III C/tetrapyrrole methyltransferase
534	 48.78	0	619263..620246	+	327	119356391	-	Cpha266_0555	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
535	 51.00	0	620290..622095	+	601	119356392	-	Cpha266_0556	-	signal peptide peptidase A
536	 53.72	+1	622165..623577	-	470	119356393	-	Cpha266_0557	-	hypothetical protein
537	 52.47	0	623904..625460	-	518	119356394	-	Cpha266_0558	-	Mg chelatase, subunit ChlI
538	 51.68	0	625602..628370	-	922	119356395	-	Cpha266_0559	-	phosphoenolpyruvate carboxylase
539	 47.82	0	628707..629348	+	213	119356396	-	Cpha266_0560	-	photosystem P840 reaction center cytochrome c-551
540	 44.44	0	629489..629839	-	116	119356397	-	Cpha266_0561	-	7-cyano-7-deazaguanine reductase
541	 49.72	0	630005..630724	+	239	119356398	-	Cpha266_0562	-	methyltransferase type 12
542	 50.29	0	630721..631581	+	286	119356399	-	Cpha266_0563	-	hypothetical protein
543	 45.29	0	631578..632564	+	328	119356400	-	Cpha266_0564	-	tyrosine recombinase XerC subunit
544	 42.90	-1	632641..632964	+	107	119356401	-	Cpha266_0565	-	hypothetical protein
545	 44.79	0	633049..634017	+	322	119356402	-	Cpha266_0566	-	HPr kinase/phosphorylase
546	 45.81	0	634030..635856	+	608	119356403	-	Cpha266_0567	-	extracellular solute-binding protein
547	 46.07	0	635866..636831	+	321	119356404	-	Cpha266_0568	-	binding-protein-dependent transport systems inner membrane component
548	 47.93	0	636859..637899	+	346	119356405	ruvB	Cpha266_0569	-	Holliday junction DNA helicase B
549	 44.03	-1	637880..639655	+	591	119356406	-	Cpha266_0570	-	TPR repeat-containing protein
550	 48.86	0	639741..643301	-	1186	119356407	-	Cpha266_0571	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
551	 49.14	0	643595..644353	+	252	119356408	-	Cpha266_0572	-	RNA methyltransferase
552	 50.00	0	644478..644861	+	127	119356409	-	Cpha266_0573	-	glycine cleavage system H protein
553	 49.81	0	644897..646231	+	444	119356410	-	Cpha266_0574	-	glycine dehydrogenase subunit 1
554	 48.82	0	646224..647114	-	296	119356411	-	Cpha266_0575	-	dihydrodipicolinate synthase
555	 48.45	0	647180..648886	-	568	119356412	-	Cpha266_0576	-	DNA repair protein RecN
556	 43.43	-1	649264..649461	-	65	119356413	-	Cpha266_0577	-	twin arginine-targeting protein translocase
557	 48.98	0	649572..650210	-	212	119356414	-	Cpha266_0578	-	phosphatidylserine decarboxylase
558	 47.24	0	650316..651293	+	325	119356415	-	Cpha266_0579	-	tRNA(Ile)-lysidine synthetase
559	 46.92	0	651356..652393	-	345	119356416	-	Cpha266_0580	-	hypothetical protein
560	 46.94	0	652406..652846	-	146	119356417	rnhA	Cpha266_0581	-	ribonuclease H
561	 42.92	-1	652925..653143	-	72	119356418	rpmB	Cpha266_0582	-	50S ribosomal protein L28
562	 48.91	0	653217..654179	-	320	119356419	-	Cpha266_0583	-	bacteriochlorophyll/chlorophyll a synthase
563	 51.70	0	654284..655339	-	351	119356420	-	Cpha266_0584	-	anthranilate phosphoribosyltransferase
564	 49.59	0	655461..656555	+	364	119356421	-	Cpha266_0585	-	peptidase M24
565	 49.33	0	656575..656949	+	124	119356422	-	Cpha266_0586	-	CutA1 divalent ion tolerance protein
566	 49.79	0	656942..658108	-	388	119356423	-	Cpha266_0587	-	DNA-directed DNA polymerase
567	 48.03	0	658124..659035	-	303	119356424	-	Cpha266_0588	-	branched-chain amino acid aminotransferase
568	 48.84	0	659232..660437	-	401	119356425	-	Cpha266_0589	-	6-phosphofructokinase
569	 46.90	0	660615..661889	+	424	119356426	-	Cpha266_0590	-	hypothetical protein
570	 49.27	0	661886..662362	-	158	119356427	-	Cpha266_0591	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
571	 45.98	0	662649..663755	+	368	119356428	-	Cpha266_0592	-	hypothetical protein
572	 50.69	0	663774..664718	-	314	119356429	-	Cpha266_0593	-	dihydroorotate oxidase B, catalytic subunit
573	 49.62	0	664816..666927	-	703	119356430	-	Cpha266_0594	-	alpha-glucan phosphorylases
574	 46.14	0	667078..667944	+	288	119356431	-	Cpha266_0595	-	metallophosphoesterase
575	 47.68	0	668001..668495	-	164	119356432	-	Cpha266_0596	-	Ferritin, Dps family protein
576	 41.19	-1	668754..669224	-	156	119356433	-	Cpha266_0597	-	hypothetical protein
577	 52.29	0	669704..670183	+	159	119356434	-	Cpha266_0598	-	hypothetical protein
578	 48.57	0	670143..671999	-	618	119356435	-	Cpha266_0599	-	carbamoyl-phosphate synthase large subunit
579	 47.05	0	672350..673639	+	429	119356436	-	Cpha266_0600	-	3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II
580	 49.96	0	673670..674992	+	440	119356437	-	Cpha266_0601	-	serine hydroxymethyltransferase
581	 47.57	0	675077..676987	-	636	119356438	-	Cpha266_0602	-	DNA primase
582	 46.85	0	677325..678071	+	248	119356439	-	Cpha266_0603	-	MotA/TolQ/ExbB proton channel
583	 44.57	0	678078..678611	+	177	119356440	-	Cpha266_0604	-	hypothetical protein
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.