IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
345	 47.56	0	407105..407575	+	156	119356202	-	Cpha266_0363	-	putative PTS IIA-like nitrogen-regulatory protein PtsN
346	 49.61	0	407766..409055	+	429	119356203	hisS	Cpha266_0364	-	histidyl-tRNA synthetase
347	 47.89	0	409052..409312	+	86	119356204	-	Cpha266_0365	-	glutaredoxin 2
348	 42.16	-1	409463..409666	+	67	119356205	-	Cpha266_0366	-	hypothetical protein
349	 46.93	0	409789..410310	+	173	119356206	-	Cpha266_0367	-	hypothetical protein
350	 44.06	-1	410366..411922	+	518	119356207	nusA	Cpha266_0368	-	transcription elongation factor NusA
351	 48.66	0	411989..414964	+	991	119356208	infB	Cpha266_0369	-	translation initiation factor IF-2
352	 42.45	-1	414983..415333	+	116	119356209	-	Cpha266_0370	-	ribosome-binding factor A
353	 49.14	0	415342..416100	+	252	119356210	-	Cpha266_0371	-	tRNA pseudouridine synthase B
354	 45.24	0	416110..417075	+	321	119356211	-	Cpha266_0372	-	riboflavin kinase / FMN adenylyltransferase
355	 45.93	0	417123..417392	+	89	119356212	rpsO	Cpha266_0373	-	30S ribosomal protein S15
356	 45.85	0	417471..418373	+	300	119356213	-	Cpha266_0374	-	hypothetical protein
357	 43.59	-1	418378..418962	+	194	119356214	gmk	Cpha266_0375	-	guanylate kinase
358	 45.30	0	418974..419324	+	116	119356215	-	Cpha266_0376	-	hypothetical protein
359	 48.80	0	419302..419799	+	165	119356216	-	Cpha266_0377	-	glyoxalase/bleomycin resistance protein/dioxygenase
360	 49.06	0	419788..420531	-	247	119356217	-	Cpha266_0378	-	UDP-N-acetylglucosamine pyrophosphorylase
361	 43.94	-1	420548..420943	-	131	119356218	-	Cpha266_0379	-	aspartate alpha-decarboxylase
362	 45.86	0	420965..421459	-	164	119356219	-	Cpha266_0380	-	hypothetical protein
363	 45.74	0	421522..422085	-	187	119356220	-	Cpha266_0381	-	outer membrane chaperone Skp (OmpH)
364	 44.58	0	422399..423127	+	242	119356221	-	Cpha266_0382	-	FkbM family methyltransferase
365	 51.92	0	423140..424285	-	381	119356222	-	Cpha266_0383	-	DNA protecting protein DprA
366	 47.15	0	424300..425298	-	332	119356223	-	Cpha266_0384	-	polyprenyl synthetase
367	 49.36	0	425301..426392	-	363	119356224	-	Cpha266_0385	-	isopentenyl pyrophosphate isomerase
368	 47.83	0	426500..427768	+	422	119356225	-	Cpha266_0386	-	hypothetical protein
369	 49.57	0	427866..429725	-	619	119356226	-	Cpha266_0387	-	ABC transporter related
370	 51.59	0	429732..431144	-	470	119356227	-	Cpha266_0388	-	phosphoglucomutase/phosphomannomutase alpha/beta/subunit
371	 42.75	-1	431461..431736	+	91	119356228	rpsT	Cpha266_0389	-	30S ribosomal protein S20
372	 49.25	0	431842..432444	+	200	119356229	-	Cpha266_0390	-	Holliday junction DNA helicase RuvA
373	 49.49	0	432457..433743	+	428	119356230	-	Cpha266_0391	-	FolC bifunctional protein
374	 39.12	-2	433743..434036	+	97	119356231	-	Cpha266_0392	-	hypothetical protein
375	 45.27	0	434054..435343	+	429	119356232	rho	Cpha266_0393	-	transcription termination factor Rho
376	 44.84	0	436605..437195	+	196	119356233	-	Cpha266_0394	-	outer surface protein, putative
377	 46.97	0	438083..438742	+	219	119356234	-	Cpha266_0395	-	hypothetical protein
378	 47.27	0	438858..439589	-	243	119356235	-	Cpha266_0396	-	hypothetical protein
379	 48.50	0	439729..442221	-	830	119356236	-	Cpha266_0397	-	surface antigen (D15)
380	 47.11	0	442245..443093	-	282	119356237	-	Cpha266_0398	-	undecaprenyl pyrophosphate synthetase
381	 49.34	0	443441..444871	+	476	119356238	-	Cpha266_0399	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A
382	 51.22	0	444915..445814	+	299	119356239	-	Cpha266_0400	-	succinyl-CoA synthetase (ADP-forming) alpha subunit
383	 49.13	0	445899..446879	-	326	119356240	-	Cpha266_0401	-	KpsF/GutQ family protein
384	 44.83	0	447003..447350	+	115	119356241	-	Cpha266_0402	-	hypothetical protein
385	 46.80	0	447357..448871	+	504	119356242	-	Cpha266_0403	-	polysaccharide biosynthesis protein
386	 46.94	0	448922..449428	-	168	119356243	-	Cpha266_0404	-	hypothetical protein
387	 51.03	0	449575..450156	-	193	119356244	-	Cpha266_0405	-	hypothetical protein
388	 50.63	0	450212..450766	-	184	119356245	-	Cpha266_0406	-	hypothetical protein
389	 44.88	0	450871..451251	-	126	119356246	-	Cpha266_0407	-	hypothetical protein
390	 45.98	0	451326..451934	-	202	119356247	-	Cpha266_0408	-	ECF subfamily RNA polymerase sigma-24 factor
391	 48.08	0	452555..453937	-	460	119356248	-	Cpha266_0410	-	phosphomannomutase
392	 50.31	0	454044..455186	+	380	119356249	-	Cpha266_0411	-	lipid-A-disaccharide synthase
393	 47.62	0	455202..455474	+	90	119356250	-	Cpha266_0412	-	hypothetical protein
394	 53.23	+1	455497..457476	-	659	119356251	-	Cpha266_0413	-	putative NADPH-dependent glutamate synthase small subunit
395	 48.02	0	457509..458495	-	328	119356252	ispH	Cpha266_0414	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
396	 50.06	0	458654..459472	-	272	119356253	-	Cpha266_0415	-	glutamate racemase
397	 48.08	0	459501..460592	-	363	119356254	-	Cpha266_0416	-	translation-associated GTPase
398	 51.40	0	460716..461429	+	237	119356255	-	Cpha266_0417	-	cytidylate kinase
399	 44.88	0	461536..463311	+	591	119356256	rpsA	Cpha266_0418	-	30S ribosomal protein S1
400	 45.10	0	463386..464303	-	305	119356257	era	Cpha266_0419	-	GTP-binding protein Era
401	 41.65	-1	464415..465641	+	408	119356258	-	Cpha266_0420	-	cell cycle protein
402	 40.89	-1	465769..466218	-	149	119356259	-	Cpha266_0421	-	hypothetical protein
403	 44.22	0	466369..467709	+	446	119356260	-	Cpha266_0422	-	RNA modification protein
404	 43.82	-1	467760..468293	+	177	119356261	-	Cpha266_0423	-	adenine phosphoribosyltransferase
405	 43.69	-1	468916..469224	-	102	119356262	-	Cpha266_0424	-	histone family protein DNA-binding protein
406	 44.81	0	469269..469634	-	121	119356263	-	Cpha266_0425	-	hypothetical protein
407	 47.42	0	469677..471635	-	652	119356264	-	Cpha266_0426	-	FtsH peptidase
408	 48.51	0	471873..473381	+	502	119356265	-	Cpha266_0427	-	glutamyl-tRNA synthetase
409	 45.98	0	473682..474812	+	376	119356266	-	Cpha266_0428	-	hydroxyneurosporene synthase
410	 50.27	0	474993..475541	+	182	119356267	-	Cpha266_0429	-	plastoquinol--plastocyanin reductase
411	 51.54	0	475569..476864	+	431	119356268	-	Cpha266_0430	-	cytochrome b/b6 domain-containing protein
412	 51.08	0	477245..480748	-	1167	119356269	-	Cpha266_0431	-	alpha amylase, catalytic region
413	 47.44	0	480951..481340	-	129	119356270	-	Cpha266_0432	-	hypothetical protein
414	 43.36	-1	481324..481722	-	132	119356271	-	Cpha266_0433	-	hypothetical protein
415	 47.22	0	481753..482040	-	95	119356272	-	Cpha266_0434	-	hypothetical protein
416	 46.27	0	482133..482882	-	249	119356273	-	Cpha266_0435	-	short-chain dehydrogenase/reductase SDR
417	 48.59	0	482952..483377	-	141	119356274	-	Cpha266_0436	-	TOBE domain-containing protein
418	 45.79	0	483873..484418	-	181	119356275	-	Cpha266_0437	-	LysR family transcriptional regulator
419	 51.03	0	484431..485300	-	289	119356276	-	Cpha266_0438	-	ABC transporter related
420	 48.23	0	485334..485729	-	131	119356277	-	Cpha266_0439	-	TOBE domain-containing protein
421	 49.21	0	486186..488390	+	734	119356278	-	Cpha266_0440	-	TonB-dependent receptor, putative
422	 46.28	0	488490..489215	+	241	119356279	-	Cpha266_0441	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
423	 51.58	0	489233..489895	+	220	119356280	-	Cpha266_0442	-	Fis family transcriptional regulator
424	 48.88	0	490096..490854	+	252	119356281	-	Cpha266_0443	-	uroporphyrin-III C/tetrapyrrole methyltransferase
425	 48.75	0	490938..492941	+	667	119356282	-	Cpha266_0444	-	TonB-dependent receptor
426	 53.71	+1	493033..494043	+	336	119356283	-	Cpha266_0445	-	transport system permease protein
427	 50.94	0	494022..494822	+	266	119356284	-	Cpha266_0446	-	ABC transporter related
428	 51.50	0	494843..495475	+	210	119356285	-	Cpha266_0447	-	methyltransferase type 11
429	 54.05	+1	495472..496581	+	369	119356286	-	Cpha266_0448	-	periplasmic binding protein
430	 47.94	0	496581..497285	+	234	119356287	-	Cpha266_0449	-	hypothetical protein
431	 47.83	0	497306..497857	+	183	119356288	-	Cpha266_0450	-	hypothetical protein
432	 51.13	0	497883..498281	+	132	119356289	-	Cpha266_0451	-	cytochrome c, putative
433	 52.08	0	498301..499356	-	351	119356290	-	Cpha266_0452	-	molybdate ABC transporter, ATPase subunit
434	 53.28	+1	499353..500039	-	228	119356291	-	Cpha266_0453	-	molybdate ABC transporter, inner membrane subunit
435	 48.13	0	500076..500825	-	249	119356292	-	Cpha266_0454	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
436	 54.14	+1	500853..501698	-	281	119356293	-	Cpha266_0455	-	modD protein
437	 52.82	0	502390..502815	-	141	119356294	-	Cpha266_0456	-	hypothetical protein
438	 49.56	0	503165..506314	+	1049	119356295	-	Cpha266_0457	-	signal transduction protein
439	 47.66	0	506372..506692	+	106	119356296	-	Cpha266_0458	-	hypothetical protein
440	 46.41	0	507049..508080	+	343	119356297	-	Cpha266_0459	-	hypothetical protein
441	 49.97	0	508115..511012	+	965	119356298	-	Cpha266_0460	-	hypothetical protein
442	 52.08	0	511666..512001	+	111	119356299	-	Cpha266_0461	-	ArsR family transcriptional regulator
443	 51.48	0	512217..512453	+	78	119356300	-	Cpha266_0462	-	redox-active disulfide protein 2
444	 52.63	0	512465..512863	+	132	119356301	-	Cpha266_0463	-	rhodanese domain-containing protein
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.