IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
271	 44.62	0	315008..315379	+	123	119356128	-	Cpha266_0285	-	hypothetical protein
272	 51.41	0	315451..315627	+	58	119356129	-	Cpha266_0286	-	hypothetical protein
273	 50.93	0	315590..315913	+	107	119356130	-	Cpha266_0287	-	hypothetical protein
274	 50.56	0	315976..316242	+	88	119356131	-	Cpha266_0288	-	hypothetical protein
275	 41.40	-1	316311..316595	+	94	119356132	-	Cpha266_0289	-	hypothetical protein
276	 39.00	-2	316573..316872	+	99	119356133	-	Cpha266_0290	-	hypothetical protein
277	 49.33	0	317163..317612	+	149	119356134	-	Cpha266_0291	-	HI0074 family nucleotidyltransferase substrate binding protein
278	 46.18	0	317609..317935	+	108	119356135	-	Cpha266_0292	-	DNA polymerase beta subunit
279	 52.86	0	318232..319209	-	325	119356136	-	Cpha266_0294	-	hypothetical protein
280	 53.62	+1	319399..319950	-	183	119356137	-	Cpha266_0295	-	hypothetical protein
281	 60.11	+2	320763..323612	+	949	119356138	-	Cpha266_0296	-	ATPase, P-type (transporting), HAD superfamily, subfamily IC
282	 56.95	+1	324655..327423	-	922	119356139	-	Cpha266_0297	-	TPR repeat-containing protein
283	 55.83	+1	327416..328633	-	405	119356140	-	Cpha266_0298	-	hypothetical protein
284	 50.45	0	329006..331756	+	916	119356141	-	Cpha266_0299	-	DNA helicase
285	 51.56	0	331874..333415	-	513	119356142	guaA	Cpha266_0300	-	bifunctional GMP synthase/glutamine amidotransferase protein
286	 50.33	0	333447..335729	-	760	119356143	-	Cpha266_0301	-	1A family penicillin-binding protein
287	 47.84	0	335760..336683	-	307	119356144	-	Cpha266_0302	-	alpha/beta hydrolase fold
288	 42.15	-1	336916..337584	+	222	119356145	-	Cpha266_0303	-	DedA protein
289	 50.94	0	338068..338544	+	158	119356146	-	Cpha266_0304	-	transcription activator, effector binding
290	 52.67	0	338629..340107	+	492	119356147	-	Cpha266_0305	-	amine oxidase
291	 53.22	+1	340193..341449	+	418	119356148	-	Cpha266_0306	-	hypothetical protein
292	 54.88	+1	341454..342191	+	245	119356149	-	Cpha266_0307	-	hypothetical protein
293	 51.46	0	342385..343239	-	284	119356150	-	Cpha266_0308	-	beta-lactamase domain-containing protein
294	 47.47	0	343261..343833	-	190	119356151	-	Cpha266_0309	-	outer surface protein, putative
295	 46.94	0	344055..344348	+	97	119356152	-	Cpha266_0310	-	C-type cytochrome, putative
296	 50.91	0	344364..345188	+	274	119356153	-	Cpha266_0311	-	NAD-dependent epimerase/dehydratase
297	 51.86	0	345213..346583	+	456	119356154	-	Cpha266_0312	-	cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing)
298	 50.52	0	346590..347165	+	191	119356155	-	Cpha266_0313	-	hypothetical protein
299	 45.25	0	347331..347825	+	164	119356156	-	Cpha266_0314	-	ferric uptake regulator family protein
300	 46.73	0	347869..348480	-	203	119356157	-	Cpha266_0315	-	hypothetical protein
301	 50.39	0	348685..349698	+	337	119356158	-	Cpha266_0316	-	hypothetical protein
302	 53.27	+1	349728..350033	+	101	119356159	-	Cpha266_0317	-	FeoA family protein
303	 51.32	0	350030..350257	+	75	119356160	-	Cpha266_0318	-	FeoA family protein
304	 46.67	0	350257..350436	+	59	119356161	-	Cpha266_0319	-	Fe2+ transport system protein B-like
305	 50.05	0	350470..351522	+	350	119356162	-	Cpha266_0320	-	transposase and inactivated derivatives
306	 49.20	0	351497..353752	+	751	119356163	-	Cpha266_0321	-	ferrous iron transport protein B
307	 45.49	0	353759..354046	+	95	119356164	-	Cpha266_0322	-	hypothetical protein
308	 46.61	0	354158..354511	+	117	119356165	-	Cpha266_0323	-	hypothetical protein
309	 47.14	0	354556..355062	+	168	119356166	-	Cpha266_0324	-	flavodoxin
310	 49.37	0	355270..356934	+	554	119356167	-	Cpha266_0325	-	transposase, IS4 family protein
311	 50.89	0	357832..359403	+	523	119356168	-	Cpha266_0328	-	integrase catalytic subunit
312	 51.25	0	359409..360245	+	278	119356169	-	Cpha266_0329	-	IstB ATP binding domain-containing protein
313	 45.49	0	360566..361108	+	180	119356170	-	Cpha266_0331	-	hypothetical protein
314	 44.88	0	361105..361797	+	230	119356171	-	Cpha266_0332	-	transposase
315	 47.96	0	361923..362387	-	154	119356172	-	Cpha266_0333	-	hypothetical protein
316	 48.69	0	362562..365126	+	854	119356173	-	Cpha266_0334	-	ATPase
317	 53.06	0	365166..366539	-	457	119356174	-	Cpha266_0335	-	tryptophan synthase subunit beta
318	 50.09	0	367091..368158	-	355	119356175	-	Cpha266_0336	-	thiamine-monophosphate kinase
319	 48.16	0	368262..369212	+	316	119356176	-	Cpha266_0337	-	signal recognition particle-docking protein FtsY
320	 47.54	0	369215..369784	-	189	119356177	-	Cpha266_0338	-	hypothetical protein
321	 49.77	0	369907..370557	+	216	119356178	-	Cpha266_0339	-	protein-L-isoaspartate O-methyltransferase
322	 46.74	0	370590..372692	+	700	119356179	-	Cpha266_0340	-	PpiC-type peptidyl-prolyl cis-trans isomerase
323	 46.27	0	372862..374670	-	602	119356180	-	Cpha266_0341	-	phosphoenolpyruvate--protein phosphotransferase
324	 48.99	0	374682..376214	-	510	119356181	-	Cpha266_0342	-	replicative DNA helicase
325	 49.85	0	376201..376872	-	223	119356182	-	Cpha266_0343	-	phage SPO1 DNA polymerase-related protein
326	 47.53	0	376893..378125	-	410	119356183	-	Cpha266_0344	-	phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase
327	 47.81	0	378181..382719	-	1512	119356184	-	Cpha266_0345	-	hypothetical protein
328	 49.82	0	382706..383263	-	185	119356185	-	Cpha266_0346	-	rfaE bifunctional protein
329	 47.49	0	383525..384421	+	298	119356186	-	Cpha266_0347	-	lipid A biosynthesis acyltransferase
330	 34.09	-2	384737..386182	-	481	119356187	-	Cpha266_0348	-	hypothetical protein
331	 27.86	-2	386294..386677	-	127	119356188	-	Cpha266_0349	-	GtrA family protein
332	 38.42	-2	386658..387659	-	333	119356189	-	Cpha266_0350	-	glycosyl transferase family protein
333	 31.62	-2	387683..390667	-	994	119356190	-	Cpha266_0351	-	glycosyl transferase family protein
334	 55.51	+1	391265..392671	-	468	119356191	-	Cpha266_0352	-	transposase, IS4 family protein
335	 46.25	0	392896..394815	+	639	119356192	-	Cpha266_0353	-	ABC transporter related
336	 43.96	-1	394874..396850	-	658	119356193	-	Cpha266_0354	-	glycosyl transferase family protein
337	 44.15	0	396890..398017	-	375	119356194	-	Cpha266_0355	-	glycosyl transferase, group 1
338	 42.56	-1	398040..398993	-	317	119356195	-	Cpha266_0356	-	hypothetical protein
339	 49.15	0	399139..400308	-	389	119356196	-	Cpha266_0357	-	glycosyl transferase, group 1
340	 44.13	0	400322..401470	-	382	119356197	-	Cpha266_0358	-	glycosyl transferase, group 1
341	 44.47	0	401533..402627	-	364	119356198	-	Cpha266_0359	-	glycosyl transferase, group 1
342	 46.58	0	402684..403793	-	369	119356199	-	Cpha266_0360	-	glycosyl transferase family protein
343	 50.73	0	404366..405319	+	317	119356200	-	Cpha266_0361	-	abortive infection protein
344	 48.19	0	405339..406193	+	284	119356201	-	Cpha266_0362	-	phosphatidate cytidylyltransferase
345	 47.56	0	407105..407575	+	156	119356202	-	Cpha266_0363	-	putative PTS IIA-like nitrogen-regulatory protein PtsN
346	 49.61	0	407766..409055	+	429	119356203	hisS	Cpha266_0364	-	histidyl-tRNA synthetase
347	 47.89	0	409052..409312	+	86	119356204	-	Cpha266_0365	-	glutaredoxin 2
348	 42.16	-1	409463..409666	+	67	119356205	-	Cpha266_0366	-	hypothetical protein
349	 46.93	0	409789..410310	+	173	119356206	-	Cpha266_0367	-	hypothetical protein
350	 44.06	-1	410366..411922	+	518	119356207	nusA	Cpha266_0368	-	transcription elongation factor NusA
351	 48.66	0	411989..414964	+	991	119356208	infB	Cpha266_0369	-	translation initiation factor IF-2
352	 42.45	-1	414983..415333	+	116	119356209	-	Cpha266_0370	-	ribosome-binding factor A
353	 49.14	0	415342..416100	+	252	119356210	-	Cpha266_0371	-	tRNA pseudouridine synthase B
354	 45.24	0	416110..417075	+	321	119356211	-	Cpha266_0372	-	riboflavin kinase / FMN adenylyltransferase
355	 45.93	0	417123..417392	+	89	119356212	rpsO	Cpha266_0373	-	30S ribosomal protein S15
356	 45.85	0	417471..418373	+	300	119356213	-	Cpha266_0374	-	hypothetical protein
357	 43.59	-1	418378..418962	+	194	119356214	gmk	Cpha266_0375	-	guanylate kinase
358	 45.30	0	418974..419324	+	116	119356215	-	Cpha266_0376	-	hypothetical protein
359	 48.80	0	419302..419799	+	165	119356216	-	Cpha266_0377	-	glyoxalase/bleomycin resistance protein/dioxygenase
360	 49.06	0	419788..420531	-	247	119356217	-	Cpha266_0378	-	UDP-N-acetylglucosamine pyrophosphorylase
361	 43.94	-1	420548..420943	-	131	119356218	-	Cpha266_0379	-	aspartate alpha-decarboxylase
362	 45.86	0	420965..421459	-	164	119356219	-	Cpha266_0380	-	hypothetical protein
363	 45.74	0	421522..422085	-	187	119356220	-	Cpha266_0381	-	outer membrane chaperone Skp (OmpH)
364	 44.58	0	422399..423127	+	242	119356221	-	Cpha266_0382	-	FkbM family methyltransferase
365	 51.92	0	423140..424285	-	381	119356222	-	Cpha266_0383	-	DNA protecting protein DprA
366	 47.15	0	424300..425298	-	332	119356223	-	Cpha266_0384	-	polyprenyl synthetase
367	 49.36	0	425301..426392	-	363	119356224	-	Cpha266_0385	-	isopentenyl pyrophosphate isomerase
368	 47.83	0	426500..427768	+	422	119356225	-	Cpha266_0386	-	hypothetical protein
369	 49.57	0	427866..429725	-	619	119356226	-	Cpha266_0387	-	ABC transporter related
370	 51.59	0	429732..431144	-	470	119356227	-	Cpha266_0388	-	phosphoglucomutase/phosphomannomutase alpha/beta/subunit
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.