IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2535	 44.65	0	3011339..3011815	+	158	119358392	-	Cpha266_2625	-	transposase
2536	 45.28	0	3011910..3012470	+	186	119358393	-	Cpha266_2626	-	transposase
2537	 53.58	+1	3012714..3014195	-	493	119358394	-	Cpha266_2627	-	RNA-directed DNA polymerase (Reverse transcriptase)
2538	 48.57	0	3014774..3016171	-	465	119358395	-	Cpha266_2628	-	hypothetical protein
2539	 30.59	-2	3016560..3017762	-	400	119358396	-	Cpha266_2630	-	glycosyl transferase, group 1
2540	 26.51	-2	3019436..3020212	-	258	119358397	-	Cpha266_2632	-	glycosyl transferase family protein
2541	 51.90	0	3021369..3022898	-	509	119358398	-	Cpha266_2634	-	transposase, IS4 family protein
2542	 54.22	+1	3023817..3025865	-	682	119358399	-	Cpha266_2635	-	polysaccharide biosynthesis protein CapD
2543	 58.90	+2	3025985..3026383	-	132	119358400	-	Cpha266_2636	-	hypothetical protein
2544	 51.47	0	3026402..3027013	-	203	119358401	-	Cpha266_2637	-	hypothetical protein
2545	 49.36	0	3026976..3027287	-	103	119358402	-	Cpha266_2638	-	hypothetical protein
2546	 43.22	-1	3027460..3027813	-	117	119358403	-	Cpha266_2639	-	S23 ribosomal protein
2547	 46.90	0	3028374..3028793	-	139	119358404	-	Cpha266_2640	-	PilT domain-containing protein
2548	 48.72	0	3028790..3029140	-	116	119358405	-	Cpha266_2641	-	hypothetical protein
2549	 44.07	-1	3029302..3029655	-	117	119358406	-	Cpha266_2642	-	hypothetical protein
2550	 47.19	0	3029652..3029882	-	76	119358407	-	Cpha266_2643	-	hypothetical protein
2551	 45.12	0	3030408..3030653	-	81	119358408	-	Cpha266_2644	-	hypothetical protein
2552	 37.50	-2	3030650..3030961	-	103	119358409	-	Cpha266_2645	-	hypothetical protein
2553	 37.82	-2	3031161..3031673	-	170	119358410	-	Cpha266_2646	-	hypothetical protein
2554	 40.80	-1	3032571..3032945	-	124	119358411	-	Cpha266_2647	-	PilT domain-containing protein
2555	 39.91	-1	3032942..3033169	-	75	119358412	-	Cpha266_2648	-	hypothetical protein
2556	 53.13	+1	3033980..3036424	-	814	119358413	-	Cpha266_2649	-	lipopolysaccharide biosynthesis
2557	 49.76	0	3036444..3037058	-	204	119358414	-	Cpha266_2650	-	hypothetical protein
2558	 32.96	-2	3037603..3037872	-	89	119358415	-	Cpha266_2651	-	hypothetical protein
2559	 51.25	0	3037891..3038727	-	278	119358416	-	Cpha266_2652	-	IstB ATP binding domain-containing protein
2560	 50.89	0	3038733..3040304	-	523	119358417	-	Cpha266_2653	-	integrase catalytic subunit
2561	 48.06	0	3040554..3040811	+	85	119358418	-	Cpha266_2654	-	hypothetical protein
2562	 45.37	0	3041064..3041495	-	143	119358419	-	Cpha266_2655	-	hypothetical protein
2563	 43.42	-1	3041492..3041719	-	75	119358420	-	Cpha266_2656	-	hypothetical protein
2564	 45.86	0	3042084..3042905	+	273	119358421	-	Cpha266_2657	-	hypothetical protein
2565	 50.89	0	3042965..3044536	+	523	119358422	-	Cpha266_2658	-	integrase catalytic subunit
2566	 51.25	0	3044542..3045378	+	278	119358423	-	Cpha266_2659	-	IstB ATP binding domain-containing protein
2567	 44.20	0	3045515..3046342	+	275	119358424	-	Cpha266_2660	-	transposase
2568	 54.18	+1	3053818..3055515	-	565	119358425	-	Cpha266_2661	-	CTP synthetase
2569	 54.67	+1	3055606..3055830	-	74	119358426	-	Cpha266_2662	-	zinc finger CDGSH-type domain-containing protein
2570	 56.08	+1	3055926..3058409	-	827	119358427	-	Cpha266_2663	-	DNA gyrase subunit A
2571	 49.75	0	3058640..3059035	-	131	119358428	-	Cpha266_2664	-	iojap-like protein
2572	 57.56	+1	3059215..3059895	-	226	119358429	-	Cpha266_2665	-	peptidase M22, glycoprotease
2573	 56.71	+1	3059902..3060333	-	143	119358430	-	Cpha266_2666	-	hypothetical protein
2574	 56.00	+1	3060341..3061615	-	424	119358431	-	Cpha266_2667	-	hypothetical protein
2575	 51.53	0	3061654..3062373	-	239	119358432	-	Cpha266_2668	-	condensin subunit ScpA
2576	 50.35	0	3062609..3063178	+	189	119358433	-	Cpha266_2669	-	TPR repeat-containing protein
2577	 54.55	+1	3063175..3064098	-	307	119358434	-	Cpha266_2670	-	peptidase C1A, papain
2578	 51.75	0	3064310..3064651	-	113	119358435	-	Cpha266_2671	-	nitrogen regulatory protein P-II
2579	 53.83	+1	3064661..3065992	-	443	119358436	-	Cpha266_2672	-	ammonium transporter
2580	 44.69	0	3066383..3066655	+	90	119358437	-	Cpha266_2673	-	RNP-1 like RNA-binding protein
2581	 53.94	+1	3066747..3067241	-	164	119358438	-	Cpha266_2674	-	Ferritin, Dps family protein
2582	 55.31	+1	3067379..3068320	-	313	119358439	-	Cpha266_2675	-	hypothetical protein
2583	 55.27	+1	3068534..3070402	-	622	119358440	-	Cpha266_2676	-	glutamine--fructose-6-phosphate transaminase
2584	 53.58	+1	3070473..3071297	-	274	119358441	-	Cpha266_2677	-	orotidine 5'-phosphate decarboxylase
2585	 53.00	0	3071749..3073833	+	694	119358442	-	Cpha266_2678	-	FtsH-2 peptidase
2586	 52.33	0	3073845..3074123	+	92	119358443	-	Cpha266_2679	-	acylphosphatase
2587	 56.80	+1	3074413..3075567	+	384	119358444	-	Cpha266_2680	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
2588	 51.45	0	3075655..3076995	+	446	119358445	-	Cpha266_2681	-	peptidase RseP
2589	 54.56	+1	3077025..3078098	+	357	119358446	prfA	Cpha266_2682	-	peptide chain release factor 1
2590	 45.92	0	3078225..3078836	+	203	119358447	-	Cpha266_2683	-	hypothetical protein
2591	 54.38	+1	3078829..3079365	+	178	119358448	-	Cpha266_2684	-	nitroreductase
2592	 52.78	0	3079462..3080037	-	191	119358449	-	Cpha266_2685	-	hypothetical protein
2593	 52.45	0	3080349..3080960	-	203	119358450	-	Cpha266_2686	-	two component LuxR family transcriptional regulator
2594	 51.05	0	3080957..3082621	-	554	119358451	-	Cpha266_2687	-	PAS/PAC sensor signal transduction histidine kinase
2595	 51.59	0	3083008..3084300	-	430	119358452	-	Cpha266_2688	-	hypothetical protein
2596	 51.27	0	3084313..3084786	-	157	119358453	-	Cpha266_2689	-	hypothetical protein
2597	 50.97	0	3084852..3085367	-	171	119358454	-	Cpha266_2690	-	hypothetical protein
2598	 50.76	0	3085391..3085918	-	175	119358455	-	Cpha266_2691	-	hypothetical protein
2599	 51.85	0	3086039..3086362	-	107	119358456	-	Cpha266_2692	-	hypothetical protein
2600	 53.25	+1	3086482..3087987	-	501	119358457	-	Cpha266_2693	-	alkaline phosphatase
2601	 47.92	0	3087972..3088211	-	79	119358458	-	Cpha266_2694	-	hypothetical protein
2602	 50.55	0	3088189..3088821	-	210	119358459	-	Cpha266_2695	-	hypothetical protein
2603	 52.40	0	3088886..3089656	-	256	119358460	-	Cpha266_2696	-	alpha/beta hydrolase fold
2604	 50.78	0	3089816..3090325	+	169	119358461	-	Cpha266_2697	-	rare lipoprotein A
2605	 51.69	0	3090408..3091088	-	226	119358462	-	Cpha266_2698	-	putative translaldolase
2606	 49.90	0	3091098..3092147	-	349	119358463	-	Cpha266_2699	-	deoxyhypusine synthase-like protein
2607	 49.46	0	3092497..3093519	+	340	119358464	-	Cpha266_2700	-	tryptophanyl-tRNA synthetase
2608	 50.79	0	3093559..3094257	+	232	119358465	-	Cpha266_2701	-	beta-phosphoglucomutase family hydrolase
2609	 48.91	0	3094267..3095922	+	551	119358466	argS	Cpha266_2702	-	arginyl-tRNA synthetase
2610	 50.51	0	3095930..3096523	-	197	119358467	-	Cpha266_2703	-	nicotinate (nicotinamide) nucleotide adenylyltransferase
2611	 45.60	0	3096537..3097433	-	298	119358468	-	Cpha266_2704	-	putative lipoprotein
2612	 47.01	0	3097594..3097827	-	77	119358469	-	Cpha266_2705	-	hypothetical protein
2613	 48.72	0	3098258..3098803	-	181	119358470	-	Cpha266_2706	-	F0F1 ATP synthase subunit delta
2614	 47.54	0	3098817..3099344	-	175	119358471	-	Cpha266_2707	-	ATP synthase F0, B subunit
2615	 48.25	0	3099450..3099677	-	75	119358472	-	Cpha266_2708	-	ATP synthase F0, C subunit
2616	 50.34	0	3099791..3100819	-	342	119358473	-	Cpha266_2709	-	F0F1 ATP synthase subunit A
2617	 39.28	-2	3100816..3101202	-	128	119358474	-	Cpha266_2710	-	hypothetical protein
2618	 51.98	0	3101358..3101609	-	83	119358475	-	Cpha266_2711	-	hypothetical protein
2619	 54.47	+1	3101819..3102589	+	256	119358476	-	Cpha266_2712	-	hypothetical protein
2620	 51.90	0	3102579..3102788	-	69	119358477	-	Cpha266_2713	-	hypothetical protein
2621	 50.59	0	3102991..3104010	+	339	119358478	-	Cpha266_2714	-	O-methyltransferase family protein
2622	 52.95	0	3104167..3105456	-	429	119358479	-	Cpha266_2715	-	acetyl-CoA hydrolase/transferase
2623	 52.47	0	3105486..3106781	-	431	119358480	-	Cpha266_2716	-	cell division protein FtsZ
2624	 50.68	0	3106824..3108143	-	439	119358481	-	Cpha266_2717	-	cell division protein FtsA
2625	 48.59	0	3108150..3109034	-	294	119358482	-	Cpha266_2718	-	polypeptide-transport-associated domain-containing protein
2626	 57.67	+2	3109031..3109597	-	188	119358483	-	Cpha266_2719	-	hypothetical protein
2627	 52.25	0	3109613..3111013	-	466	119358484	-	Cpha266_2720	-	UDP-N-acetylmuramate--L-alanine ligase
2628	 55.62	+1	3111023..3112117	-	364	119358485	-	Cpha266_2721	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
2629	 49.67	0	3112114..3113313	-	399	119358486	-	Cpha266_2722	-	cell cycle protein
2630	 54.41	+1	3113310..3114704	-	464	119358487	-	Cpha266_2723	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
2631	 49.23	0	3114704..3115810	-	368	119358488	-	Cpha266_2724	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
2632	 54.69	+1	3115823..3117241	-	472	119358489	-	Cpha266_2725	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
2633	 54.39	+1	3117226..3118764	-	512	119358490	-	Cpha266_2726	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2634	 50.61	0	3118797..3120851	-	684	119358491	-	Cpha266_2727	-	peptidoglycan glycosyltransferase
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.