IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2471	 46.75	0	2934932..2935162	-	76	119358328	-	Cpha266_2560	-	hypothetical protein
2472	 45.12	0	2935844..2936089	+	81	119358329	-	Cpha266_2561	-	hypothetical protein
2473	 54.74	+1	2936146..2938308	+	720	119358330	-	Cpha266_2562	-	formate dehydrogenase
2474	 55.91	+1	2938312..2938878	+	188	119358331	-	Cpha266_2563	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2475	 54.52	+1	2938881..2939876	+	331	119358332	-	Cpha266_2564	-	polysulphide reductase, NrfD
2476	 57.46	+1	2939929..2940645	+	238	119358333	-	Cpha266_2565	-	hypothetical protein
2477	 54.10	+1	2940683..2941279	-	198	119358334	-	Cpha266_2566	-	SOUL heme-binding protein
2478	 51.25	0	2941352..2942188	-	278	119358335	-	Cpha266_2567	-	IstB ATP binding domain-containing protein
2479	 50.89	0	2942194..2943765	-	523	119358336	-	Cpha266_2568	-	integrase catalytic subunit
2480	 50.77	0	2944271..2945704	-	477	119358337	-	Cpha266_2569	-	sulfide-quinone reductase
2481	 52.21	0	2945919..2946347	+	142	119358338	-	Cpha266_2570	-	Holliday junction resolvase YqgF
2482	 57.22	+1	2946470..2947051	+	193	119358339	pyrE	Cpha266_2571	-	orotate phosphoribosyltransferase
2483	 50.80	0	2947057..2947926	+	289	119358340	-	Cpha266_2572	-	prephenate dehydrogenase
2484	 54.08	+1	2947923..2948780	+	285	119358341	-	Cpha266_2573	-	NAD(+) kinase
2485	 56.19	+1	2948823..2950301	+	492	119358342	-	Cpha266_2574	-	hypothetical protein
2486	 54.76	+1	2950339..2950884	-	181	119358343	-	Cpha266_2575	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
2487	 54.15	+1	2950923..2951753	-	276	119358344	-	Cpha266_2576	-	2-dehydro-3-deoxyphosphooctonate aldolase
2488	 52.23	0	2951866..2953188	+	440	119358345	-	Cpha266_2577	-	ATPase
2489	 54.43	+1	2953213..2954340	+	375	119358346	-	Cpha266_2578	-	glycoside hydrolase family 3 protein
2490	 52.98	0	2954331..2954834	+	167	119358347	-	Cpha266_2579	-	putative phosphohistidine phosphatase, SixA
2491	 54.39	+1	2954894..2955895	-	333	119358348	-	Cpha266_2580	-	glycerol-3-phosphate dehydrogenase (NAD(P)(+))
2492	 48.02	0	2955911..2956618	-	235	119358349	-	Cpha266_2581	-	acyl-phosphate glycerol-3-phosphate acyltransferase
2493	 53.54	+1	2956653..2957642	-	329	119358350	-	Cpha266_2582	-	phosphoribosylaminoimidazole synthetase
2494	 54.10	+1	2957696..2959111	-	471	119358351	-	Cpha266_2583	-	aspartate kinase III
2495	 55.34	+1	2959201..2959818	+	205	119358352	-	Cpha266_2584	-	NLP/P60 protein
2496	 52.53	0	2959954..2960823	+	289	119358353	prmA	Cpha266_2585	-	ribosomal protein L11 methyltransferase
2497	 55.34	+1	2960820..2961755	+	311	119358354	-	Cpha266_2586	-	Ppx/GppA phosphatase
2498	 54.38	+1	2961688..2963022	-	444	119358355	-	Cpha266_2587	-	hypothetical protein
2499	 52.65	0	2964141..2965916	-	591	119358356	-	Cpha266_2588	-	AMP-dependent synthetase and ligase
2500	 53.33	+1	2966175..2966444	-	89	119358357	-	Cpha266_2589	-	hypothetical protein
2501	 55.99	+1	2966456..2967907	-	483	119358358	-	Cpha266_2590	-	glycerol kinase
2502	 52.94	0	2968025..2968687	-	220	119358359	-	Cpha266_2591	-	HAD family hydrolase
2503	 49.04	0	2968727..2970553	-	608	119358360	-	Cpha266_2592	-	magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
2504	 45.17	0	2971423..2972115	-	230	119358361	-	Cpha266_2593	-	metallophosphoesterase
2505	 46.96	0	2972210..2972752	-	180	119358362	-	Cpha266_2594	-	transcription antitermination protein nusG
2506	 52.39	0	2973267..2974688	-	473	119358363	-	Cpha266_2595	-	mannose-1-phosphate guanylyltransferase (GDP)
2507	 52.19	0	2975351..2976103	-	250	119358364	-	Cpha266_2596	-	hypothetical protein
2508	 46.86	0	2977578..2978612	-	344	119358365	-	Cpha266_2597	-	6-phosphofructokinase
2509	 42.65	-1	2979426..2979629	-	67	119358366	-	Cpha266_2598	-	hypothetical protein
2510	 43.77	-1	2980380..2980724	-	114	119358367	-	Cpha266_2599	-	hypothetical protein
2511	 44.80	0	2981165..2981905	-	246	119358368	-	Cpha266_2600	-	hypothetical protein
2512	 37.31	-2	2982658..2982858	-	66	119358369	-	Cpha266_2601	-	hypothetical protein
2513	 37.45	-2	2982855..2983097	-	80	119358370	-	Cpha266_2602	-	hypothetical protein
2514	 48.72	0	2983953..2985362	-	469	119358371	-	Cpha266_2603	-	putative transcriptional regulator
2515	 44.44	0	2986343..2986576	-	77	119358372	-	Cpha266_2604	-	hypothetical protein
2516	 53.44	+1	2988898..2990802	-	634	119358373	-	Cpha266_2605	-	glutamine--fructose-6-phosphate transaminase
2517	 28.86	-2	2991166..2992977	-	603	119358374	-	Cpha266_2606	-	acyltransferase 3
2518	 49.04	0	2993067..2993639	-	190	119358375	-	Cpha266_2607	-	putative acetyltransferase
2519	 51.34	0	2994147..2995340	-	397	119358376	-	Cpha266_2608	-	GDP-mannose 4,6-dehydratase
2520	 40.11	-1	2995439..2995807	-	122	119358377	-	Cpha266_2609	-	S23 ribosomal protein
2521	 48.52	0	2995898..2996911	-	337	119358378	-	Cpha266_2610	-	NAD-dependent epimerase/dehydratase
2522	 50.24	0	2997534..2998586	-	350	119358379	-	Cpha266_2612	-	transposase and inactivated derivatives
2523	 49.47	0	2998683..3000008	+	441	119358380	-	Cpha266_2613	-	hypothetical protein
2524	 46.52	0	3000128..3000400	+	90	119358381	-	Cpha266_2614	-	hypothetical protein
2525	 45.33	0	3000483..3001049	-	188	119358382	-	Cpha266_2615	-	sugar transferase
2526	 48.65	0	3001081..3002040	-	319	119358383	-	Cpha266_2616	-	NAD-dependent epimerase/dehydratase
2527	 34.98	-2	3002078..3002926	-	282	119358384	-	Cpha266_2617	-	polysaccharide deacetylase
2528	 30.41	-2	3002940..3004103	-	387	119358385	-	Cpha266_2618	-	carbamoylphosphate synthase large subunit (split gene in MJ)-like
2529	 32.07	-2	3004133..3004687	-	184	119358386	-	Cpha266_2619	-	hexapaptide repeat-containing transferase
2530	 46.31	0	3004935..3005381	-	148	119358387	-	Cpha266_2620	-	hypothetical protein
2531	 44.90	0	3005766..3006059	-	97	119358388	-	Cpha266_2621	-	hypothetical protein
2532	 28.16	-2	3007416..3008711	-	431	119358389	-	Cpha266_2622	-	polysaccharide biosynthesis protein
2533	 26.62	-2	3008857..3010092	-	411	119358390	-	Cpha266_2623	-	hypothetical protein
2534	 29.03	-2	3010092..3011021	-	309	119358391	-	Cpha266_2624	-	hypothetical protein
2535	 44.65	0	3011339..3011815	+	158	119358392	-	Cpha266_2625	-	transposase
2536	 45.28	0	3011910..3012470	+	186	119358393	-	Cpha266_2626	-	transposase
2537	 53.58	+1	3012714..3014195	-	493	119358394	-	Cpha266_2627	-	RNA-directed DNA polymerase (Reverse transcriptase)
2538	 48.57	0	3014774..3016171	-	465	119358395	-	Cpha266_2628	-	hypothetical protein
2539	 30.59	-2	3016560..3017762	-	400	119358396	-	Cpha266_2630	-	glycosyl transferase, group 1
2540	 26.51	-2	3019436..3020212	-	258	119358397	-	Cpha266_2632	-	glycosyl transferase family protein
2541	 51.90	0	3021369..3022898	-	509	119358398	-	Cpha266_2634	-	transposase, IS4 family protein
2542	 54.22	+1	3023817..3025865	-	682	119358399	-	Cpha266_2635	-	polysaccharide biosynthesis protein CapD
2543	 58.90	+2	3025985..3026383	-	132	119358400	-	Cpha266_2636	-	hypothetical protein
2544	 51.47	0	3026402..3027013	-	203	119358401	-	Cpha266_2637	-	hypothetical protein
2545	 49.36	0	3026976..3027287	-	103	119358402	-	Cpha266_2638	-	hypothetical protein
2546	 43.22	-1	3027460..3027813	-	117	119358403	-	Cpha266_2639	-	S23 ribosomal protein
2547	 46.90	0	3028374..3028793	-	139	119358404	-	Cpha266_2640	-	PilT domain-containing protein
2548	 48.72	0	3028790..3029140	-	116	119358405	-	Cpha266_2641	-	hypothetical protein
2549	 44.07	-1	3029302..3029655	-	117	119358406	-	Cpha266_2642	-	hypothetical protein
2550	 47.19	0	3029652..3029882	-	76	119358407	-	Cpha266_2643	-	hypothetical protein
2551	 45.12	0	3030408..3030653	-	81	119358408	-	Cpha266_2644	-	hypothetical protein
2552	 37.50	-2	3030650..3030961	-	103	119358409	-	Cpha266_2645	-	hypothetical protein
2553	 37.82	-2	3031161..3031673	-	170	119358410	-	Cpha266_2646	-	hypothetical protein
2554	 40.80	-1	3032571..3032945	-	124	119358411	-	Cpha266_2647	-	PilT domain-containing protein
2555	 39.91	-1	3032942..3033169	-	75	119358412	-	Cpha266_2648	-	hypothetical protein
2556	 53.13	+1	3033980..3036424	-	814	119358413	-	Cpha266_2649	-	lipopolysaccharide biosynthesis
2557	 49.76	0	3036444..3037058	-	204	119358414	-	Cpha266_2650	-	hypothetical protein
2558	 32.96	-2	3037603..3037872	-	89	119358415	-	Cpha266_2651	-	hypothetical protein
2559	 51.25	0	3037891..3038727	-	278	119358416	-	Cpha266_2652	-	IstB ATP binding domain-containing protein
2560	 50.89	0	3038733..3040304	-	523	119358417	-	Cpha266_2653	-	integrase catalytic subunit
2561	 48.06	0	3040554..3040811	+	85	119358418	-	Cpha266_2654	-	hypothetical protein
2562	 45.37	0	3041064..3041495	-	143	119358419	-	Cpha266_2655	-	hypothetical protein
2563	 43.42	-1	3041492..3041719	-	75	119358420	-	Cpha266_2656	-	hypothetical protein
2564	 45.86	0	3042084..3042905	+	273	119358421	-	Cpha266_2657	-	hypothetical protein
2565	 50.89	0	3042965..3044536	+	523	119358422	-	Cpha266_2658	-	integrase catalytic subunit
2566	 51.25	0	3044542..3045378	+	278	119358423	-	Cpha266_2659	-	IstB ATP binding domain-containing protein
2567	 44.20	0	3045515..3046342	+	275	119358424	-	Cpha266_2660	-	transposase
2568	 54.18	+1	3053818..3055515	-	565	119358425	-	Cpha266_2661	-	CTP synthetase
2569	 54.67	+1	3055606..3055830	-	74	119358426	-	Cpha266_2662	-	zinc finger CDGSH-type domain-containing protein
2570	 56.08	+1	3055926..3058409	-	827	119358427	-	Cpha266_2663	-	DNA gyrase subunit A
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.