IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
201	 45.24	0	235520..235813	-	97	119356058	-	Cpha266_0211	-	hypothetical protein
202	 39.43	-2	235828..236106	+	92	119356059	-	Cpha266_0212	-	hypothetical protein
203	 47.92	0	236076..237254	-	392	119356060	-	Cpha266_0213	-	arsenite-activated ATPase ArsA
204	 46.28	0	237528..238454	-	308	119356061	-	Cpha266_0214	-	TPR repeat-containing protein
205	 48.84	0	238734..239249	+	171	119356062	-	Cpha266_0215	-	rare lipoprotein A
206	 43.08	-1	239375..239815	-	146	119356063	-	Cpha266_0216	-	hypothetical protein
207	 46.89	0	240184..240360	-	58	119356064	-	Cpha266_0217	-	rubredoxin-type Fe(Cys)4 protein
208	 47.69	0	240597..241397	-	266	119356065	-	Cpha266_0218	-	diaminopimelate epimerase
209	 47.13	0	241814..244009	+	731	119356066	-	Cpha266_0219	-	photosystem P840 reaction center, large subunit
210	 49.43	0	244107..244808	+	233	119356067	-	Cpha266_0220	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
211	 42.53	-1	244888..245670	+	260	119356068	-	Cpha266_0221	-	dolichyl-phosphate beta-D-mannosyltransferase
212	 46.97	0	245800..247875	-	691	119356069	-	Cpha266_0222	-	elongation factor G
213	 46.80	0	248120..249433	+	437	119356070	-	Cpha266_0223	-	enolase
214	 38.24	-2	249641..249946	+	101	119356071	-	Cpha266_0224	-	septum formation initiator
215	 47.05	0	249984..252017	+	677	119356072	-	Cpha266_0225	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
216	 48.46	0	252086..252865	+	259	119356073	-	Cpha266_0226	-	short-chain dehydrogenase/reductase SDR
217	 42.71	-1	253349..253540	+	63	119356074	secE	Cpha266_0227	-	preprotein translocase subunit SecE
218	 46.18	0	253562..254137	+	191	119356075	-	Cpha266_0228	-	transcription antitermination protein nusG
219	 50.00	0	254181..254606	+	141	119356076	rplK	Cpha266_0229	-	50S ribosomal protein L11
220	 47.83	0	254677..255366	+	229	119356077	rplA	Cpha266_0230	-	50S ribosomal protein L1
221	 47.78	0	255384..255902	+	172	119356078	rplJ	Cpha266_0231	-	50S ribosomal protein L10
222	 49.47	0	255969..256346	+	125	119356079	rplL	Cpha266_0232	-	50S ribosomal protein L7/L12
223	 45.77	0	256527..260465	+	1312	119356080	rpoB	Cpha266_0233	-	DNA-directed RNA polymerase subunit beta
224	 48.11	0	260535..265013	+	1492	119356081	-	Cpha266_0234	-	DNA-directed RNA polymerase subunit beta'
225	 49.96	0	265212..266558	-	448	119356082	-	Cpha266_0235	-	acetyl-CoA carboxylase, biotin carboxylase
226	 49.49	0	266578..267072	-	164	119356083	-	Cpha266_0236	-	biotin carboxyl carrier protein
227	 45.33	0	267125..267691	-	188	119356084	-	Cpha266_0237	-	translation elongation factor P (EF-P)
228	 47.83	0	267907..268182	+	91	119356085	-	Cpha266_0238	-	histone family protein DNA-binding protein
229	 49.00	0	268272..269273	+	333	119356086	-	Cpha266_0239	-	acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
230	 51.99	0	269383..270411	-	342	119356087	-	Cpha266_0240	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
231	 53.34	+1	270415..272298	-	627	119356088	-	Cpha266_0241	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
232	 46.30	0	272505..272774	-	89	119356089	-	Cpha266_0242	-	hypothetical protein
233	 52.98	0	273033..275699	+	888	119356090	alaS	Cpha266_0243	-	alanyl-tRNA synthetase
234	 52.54	0	275723..277081	+	452	119356091	-	Cpha266_0244	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
235	 56.16	+1	277187..277681	+	164	119356092	-	Cpha266_0245	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
236	 57.10	+1	277733..278035	+	100	119356093	-	Cpha266_0246	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
237	 51.52	0	278091..279047	-	318	119356094	-	Cpha266_0247	-	HipA domain-containing protein
238	 51.23	0	279052..279375	-	107	119356095	-	Cpha266_0248	-	hypothetical protein
239	 51.69	0	279379..279585	-	68	119356096	-	Cpha266_0249	-	XRE family transcriptional regulator
240	 57.88	+2	279920..281137	-	405	119356097	-	Cpha266_0250	-	phosphoserine phosphatase
241	 41.92	-1	283296..283586	-	96	119356098	-	Cpha266_0252	-	hypothetical protein
242	 44.89	0	283583..283807	-	74	119356099	-	Cpha266_0253	-	addiction module component
243	 50.20	0	283850..285070	-	406	119356100	-	Cpha266_0254	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
244	 51.67	0	285748..286614	+	288	119356101	-	Cpha266_0255	-	hypothetical protein
245	 48.48	0	287225..288241	+	338	119356102	-	Cpha266_0257	-	integron integrase
246	 43.82	-1	288424..288852	+	142	119356103	-	Cpha266_0258	-	hypothetical protein
247	 39.58	-2	289090..289329	+	79	119356104	-	Cpha266_0259	-	hypothetical protein
248	 34.88	-2	289482..289934	+	150	119356105	-	Cpha266_0260	-	hypothetical protein
249	 55.51	+1	290524..291930	-	468	119356106	-	Cpha266_0262	-	transposase, IS4 family protein
250	 36.98	-2	292108..292848	+	246	119356107	-	Cpha266_0263	-	hypothetical protein
251	 42.86	-1	292938..293210	+	90	119356108	-	Cpha266_0264	-	hypothetical protein
252	 45.74	0	293207..293464	+	85	119356109	-	Cpha266_0265	-	hypothetical protein
253	 48.85	0	293727..294203	+	158	119356110	-	Cpha266_0266	-	hypothetical protein
254	 43.93	-1	294586..295170	+	194	119356111	-	Cpha266_0267	-	hypothetical protein
255	 44.23	0	295418..296188	+	256	119356112	-	Cpha266_0268	-	hypothetical protein
256	 55.51	+1	296448..297854	-	468	119356113	-	Cpha266_0269	-	transposase, IS4 family protein
257	 44.70	0	298718..298981	+	87	119356114	-	Cpha266_0270	-	hypothetical protein
258	 38.27	-2	299402..300049	+	215	119356115	-	Cpha266_0271	-	hypothetical protein
259	 39.34	-2	300217..301065	+	282	119356116	-	Cpha266_0272	-	hypothetical protein
260	 50.89	0	301160..302731	+	523	119356117	-	Cpha266_0273	-	integrase catalytic subunit
261	 51.25	0	302737..303573	+	278	119356118	-	Cpha266_0274	-	IstB ATP binding domain-containing protein
262	 42.96	-1	304390..305262	+	290	119356119	-	Cpha266_0275	-	SEFIR domain-containing protein
263	 39.95	-1	305551..306744	+	397	119356120	-	Cpha266_0276	-	hypothetical protein
264	 32.90	-2	306836..307525	+	229	119356121	-	Cpha266_0277	-	hypothetical protein
265	 52.04	0	307601..308236	+	211	119356122	-	Cpha266_0278	-	hypothetical protein
266	 40.21	-1	309191..309961	+	256	119356123	-	Cpha266_0280	-	hypothetical protein
267	 57.59	+1	310485..311354	+	289	119356124	-	Cpha266_0281	-	abortive infection protein
268	 45.54	0	312094..312396	+	100	119356125	-	Cpha266_0282	-	ferredoxin, 2Fe-2S
269	 43.76	-1	312684..313556	-	290	119356126	-	Cpha266_0283	-	hypothetical protein
270	 45.86	0	313519..314508	-	329	119356127	-	Cpha266_0284	-	hypothetical protein
271	 44.62	0	315008..315379	+	123	119356128	-	Cpha266_0285	-	hypothetical protein
272	 51.41	0	315451..315627	+	58	119356129	-	Cpha266_0286	-	hypothetical protein
273	 50.93	0	315590..315913	+	107	119356130	-	Cpha266_0287	-	hypothetical protein
274	 50.56	0	315976..316242	+	88	119356131	-	Cpha266_0288	-	hypothetical protein
275	 41.40	-1	316311..316595	+	94	119356132	-	Cpha266_0289	-	hypothetical protein
276	 39.00	-2	316573..316872	+	99	119356133	-	Cpha266_0290	-	hypothetical protein
277	 49.33	0	317163..317612	+	149	119356134	-	Cpha266_0291	-	HI0074 family nucleotidyltransferase substrate binding protein
278	 46.18	0	317609..317935	+	108	119356135	-	Cpha266_0292	-	DNA polymerase beta subunit
279	 52.86	0	318232..319209	-	325	119356136	-	Cpha266_0294	-	hypothetical protein
280	 53.62	+1	319399..319950	-	183	119356137	-	Cpha266_0295	-	hypothetical protein
281	 60.11	+2	320763..323612	+	949	119356138	-	Cpha266_0296	-	ATPase, P-type (transporting), HAD superfamily, subfamily IC
282	 56.95	+1	324655..327423	-	922	119356139	-	Cpha266_0297	-	TPR repeat-containing protein
283	 55.83	+1	327416..328633	-	405	119356140	-	Cpha266_0298	-	hypothetical protein
284	 50.45	0	329006..331756	+	916	119356141	-	Cpha266_0299	-	DNA helicase
285	 51.56	0	331874..333415	-	513	119356142	guaA	Cpha266_0300	-	bifunctional GMP synthase/glutamine amidotransferase protein
286	 50.33	0	333447..335729	-	760	119356143	-	Cpha266_0301	-	1A family penicillin-binding protein
287	 47.84	0	335760..336683	-	307	119356144	-	Cpha266_0302	-	alpha/beta hydrolase fold
288	 42.15	-1	336916..337584	+	222	119356145	-	Cpha266_0303	-	DedA protein
289	 50.94	0	338068..338544	+	158	119356146	-	Cpha266_0304	-	transcription activator, effector binding
290	 52.67	0	338629..340107	+	492	119356147	-	Cpha266_0305	-	amine oxidase
291	 53.22	+1	340193..341449	+	418	119356148	-	Cpha266_0306	-	hypothetical protein
292	 54.88	+1	341454..342191	+	245	119356149	-	Cpha266_0307	-	hypothetical protein
293	 51.46	0	342385..343239	-	284	119356150	-	Cpha266_0308	-	beta-lactamase domain-containing protein
294	 47.47	0	343261..343833	-	190	119356151	-	Cpha266_0309	-	outer surface protein, putative
295	 46.94	0	344055..344348	+	97	119356152	-	Cpha266_0310	-	C-type cytochrome, putative
296	 50.91	0	344364..345188	+	274	119356153	-	Cpha266_0311	-	NAD-dependent epimerase/dehydratase
297	 51.86	0	345213..346583	+	456	119356154	-	Cpha266_0312	-	cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing)
298	 50.52	0	346590..347165	+	191	119356155	-	Cpha266_0313	-	hypothetical protein
299	 45.25	0	347331..347825	+	164	119356156	-	Cpha266_0314	-	ferric uptake regulator family protein
300	 46.73	0	347869..348480	-	203	119356157	-	Cpha266_0315	-	hypothetical protein
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.