IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2390	 48.03	0	2851902..2852180	-	92	119358247	-	Cpha266_2479	-	excinuclease ABC subunit C
2391	 47.67	0	2852326..2852604	-	92	119358248	-	Cpha266_2480	-	excinuclease ABC subunit C
2392	 47.67	0	2852749..2853027	-	92	119358249	-	Cpha266_2481	-	hypothetical protein
2393	 47.67	0	2853172..2853450	-	92	119358250	-	Cpha266_2482	-	excinuclease ABC subunit C
2394	 47.67	0	2853596..2853874	-	92	119358251	-	Cpha266_2483	-	excinuclease ABC subunit C
2395	 47.67	0	2854019..2854297	-	92	119358252	-	Cpha266_2484	-	excinuclease ABC subunit C
2396	 47.67	0	2854442..2854720	-	92	119358253	-	Cpha266_2485	-	excinuclease ABC subunit C
2397	 47.67	0	2854865..2855143	-	92	119358254	-	Cpha266_2486	-	excinuclease ABC subunit C
2398	 43.75	-1	2855472..2855999	+	175	119358255	-	Cpha266_2487	-	hypothetical protein
2399	 53.65	+1	2856026..2856217	+	63	119358256	rpmF	Cpha266_2488	-	50S ribosomal protein L32
2400	 48.83	0	2856241..2857266	+	341	119358257	-	Cpha266_2489	-	putative glycerol-3-phosphate acyltransferase PlsX
2401	 49.80	0	2857361..2858350	+	329	119358258	-	Cpha266_2490	-	3-oxoacyl-(acyl carrier protein) synthase III
2402	 52.37	0	2858386..2859294	+	302	119358259	-	Cpha266_2491	-	[Acyl-carrier-protein] S-malonyltransferase
2403	 49.73	0	2859338..2860075	+	245	119358260	-	Cpha266_2492	-	3-oxoacyl-[acyl-carrier-protein] reductase
2404	 40.93	-1	2860163..2860399	+	78	119358261	-	Cpha266_2493	-	acyl carrier protein
2405	 50.84	0	2860448..2861704	+	418	119358262	-	Cpha266_2494	-	3-oxoacyl-[acyl-carrier-protein] synthase II
2406	 48.18	0	2861718..2862539	+	273	119358263	-	Cpha266_2495	-	ribonuclease III
2407	 50.79	0	2862739..2864199	+	486	119358264	-	Cpha266_2496	-	glycine dehydrogenase subunit 2
2408	 47.76	0	2864311..2864823	+	170	119358265	-	Cpha266_2497	-	HNH endonuclease
2409	 51.68	0	2864849..2865442	+	197	119358266	-	Cpha266_2498	-	CMP/dCMP deaminase, zinc-binding
2410	 50.51	0	2865580..2867349	+	589	119358267	-	Cpha266_2499	-	glycoside hydrolase family 3 protein
2411	 51.56	0	2867391..2868800	+	469	119358268	-	Cpha266_2500	-	chlorophyllide reductase subunit Z
2412	 51.78	0	2868951..2870978	+	675	119358269	-	Cpha266_2501	-	Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
2413	 46.19	0	2870994..2871623	+	209	119358270	infC	Cpha266_2502	-	translation initiation factor IF-3
2414	 41.54	-1	2871666..2871860	+	64	119358271	rpmI	Cpha266_2503	-	50S ribosomal protein L35
2415	 45.11	0	2871887..2872234	+	115	119358272	rplT	Cpha266_2504	-	50S ribosomal protein L20
2416	 51.95	0	2872251..2873276	+	341	119358273	-	Cpha266_2505	-	phenylalanyl-tRNA synthetase, alpha subunit
2417	 43.83	-1	2873286..2873933	-	215	119358274	-	Cpha266_2506	-	hypothetical protein
2418	 44.52	0	2873948..2874886	-	312	119358275	-	Cpha266_2507	-	hypothetical protein
2419	 43.26	-1	2875034..2875426	-	130	119358276	-	Cpha266_2508	-	hypothetical protein
2420	 48.46	0	2875636..2876091	-	151	119358277	rplI	Cpha266_2509	-	50S ribosomal protein L9
2421	 41.67	-1	2876128..2876391	-	87	119358278	rpsR	Cpha266_2510	-	30S ribosomal protein S18
2422	 43.67	-1	2876426..2876899	-	157	119358279	-	Cpha266_2511	-	single-strand binding protein
2423	 45.77	0	2876968..2877369	-	133	119358280	rpsF	Cpha266_2512	-	30S ribosomal protein S6
2424	 51.75	0	2877660..2878430	-	256	119358281	-	Cpha266_2513	-	exodeoxyribonuclease III Xth
2425	 51.80	0	2878427..2879428	-	333	119358282	-	Cpha266_2514	-	glycosyl transferase family protein
2426	 54.17	+1	2879434..2879961	-	175	119358283	-	Cpha266_2515	-	hypothetical protein
2427	 48.57	0	2880005..2880424	-	139	119358284	-	Cpha266_2516	-	thioesterase superfamily protein
2428	 52.74	0	2880756..2882744	+	662	119358285	-	Cpha266_2517	-	hypothetical protein
2429	 52.09	0	2882755..2883927	+	390	119358286	-	Cpha266_2518	-	peptidase M24
2430	 50.45	0	2884000..2884776	+	258	119358287	-	Cpha266_2519	-	electron transfer flavoprotein beta-subunit
2431	 51.04	0	2884789..2885703	+	304	119358288	-	Cpha266_2520	-	electron transfer flavoprotein, alpha subunit
2432	 52.53	0	2885754..2886446	-	230	119358289	-	Cpha266_2521	-	MscS mechanosensitive ion channel
2433	 49.64	0	2886486..2887466	-	326	119358290	-	Cpha266_2522	-	hypothetical protein
2434	 43.66	-1	2887701..2888465	+	254	119358291	-	Cpha266_2523	-	Type II site-specific deoxyribonuclease
2435	 45.26	0	2888446..2889552	-	368	119358292	-	Cpha266_2524	-	DNA methylase N-4/N-6 domain-containing protein
2436	 37.91	-2	2889700..2890158	-	152	119358293	-	Cpha266_2525	-	hypothetical protein
2437	 45.54	0	2890275..2891003	-	242	119358294	-	Cpha266_2526	-	mucin-associated surface protein (MASP)
2438	 42.69	-1	2891016..2891795	-	259	119358295	-	Cpha266_2527	-	hypothetical protein
2439	 50.55	0	2892749..2893654	+	301	119358296	-	Cpha266_2528	-	alpha/beta hydrolase fold
2440	 42.49	-1	2893871..2894602	+	243	119358297	-	Cpha266_2529	-	TPR repeat-containing protein
2441	 43.04	-1	2900390..2900698	+	102	119358298	-	Cpha266_2530	-	hypothetical protein
2442	 52.68	0	2901190..2902791	+	533	119358299	-	Cpha266_2531	-	hypothetical protein
2443	 50.76	0	2902860..2905148	-	762	119358300	-	Cpha266_2532	-	heavy metal translocating P-type ATPase
2444	 48.97	0	2905145..2905726	-	193	119358301	-	Cpha266_2533	-	hypothetical protein
2445	 47.18	0	2905987..2907069	-	360	119358302	-	Cpha266_2534	-	protein of unknown function DUF900, hydrolase family protein
2446	 56.01	+1	2907264..2907929	-	221	119358303	-	Cpha266_2535	-	phospholipase/carboxylesterase
2447	 49.68	0	2908009..2911305	-	1098	119358304	-	Cpha266_2536	-	trehalose synthase
2448	 50.89	0	2911348..2913426	-	692	119358305	-	Cpha266_2537	-	alpha amylase, catalytic region
2449	 52.01	0	2913751..2914842	+	363	119358306	-	Cpha266_2538	-	peptide chain release factor 2
2450	 54.92	+1	2914842..2915684	+	280	119358307	-	Cpha266_2539	-	hypothetical protein
2451	 39.87	-1	2916081..2916386	+	101	119358308	-	Cpha266_2540	-	hypothetical protein
2452	 53.85	+1	2916437..2917708	-	423	119358309	-	Cpha266_2541	-	competence/damage-inducible protein CinA
2453	 51.14	0	2917715..2920162	-	815	119358310	-	Cpha266_2542	-	bifunctional aspartokinase I/homeserine dehydrogenase I
2454	 50.23	0	2920356..2921231	-	291	119358311	-	Cpha266_2543	-	F0F1 ATP synthase subunit gamma
2455	 51.68	0	2921353..2922933	-	526	119358312	-	Cpha266_2544	-	F0F1 ATP synthase subunit alpha
2456	 55.04	+1	2923151..2924113	+	320	119358313	-	Cpha266_2545	-	homoserine kinase
2457	 52.09	0	2924140..2925456	+	438	119358314	-	Cpha266_2546	-	threonine synthase
2458	 50.91	0	2925474..2926184	+	236	119358315	-	Cpha266_2547	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
2459	 53.21	+1	2926211..2926678	-	155	119358316	-	Cpha266_2548	-	6,7-dimethyl-8-ribityllumazine synthase
2460	 54.77	+1	2926659..2927339	-	226	119358317	-	Cpha266_2549	-	phosphoheptose isomerase
2461	 45.93	0	2927388..2927633	+	81	119358318	-	Cpha266_2550	-	hypothetical protein
2462	 50.78	0	2927652..2928488	+	278	119358319	-	Cpha266_2551	-	UspA domain-containing protein
2463	 51.78	0	2928514..2928963	-	149	119358320	-	Cpha266_2552	-	redoxin domain-containing protein
2464	 53.56	+1	2929129..2930280	-	383	119358321	-	Cpha266_2553	-	UDP-N-acetylglucosamine 2-epimerase
2465	 50.74	0	2930412..2931353	+	313	119358322	-	Cpha266_2554	-	hypothetical protein
2466	 50.78	0	2931410..2931667	-	85	119358323	-	Cpha266_2555	-	FmdB family regulatory protein
2467	 51.40	0	2931802..2932587	+	261	119358324	-	Cpha266_2556	-	DNA repair protein RecO
2468	 54.86	+1	2932812..2934107	+	431	119358325	-	Cpha266_2557	-	glutamate-1-semialdehyde 2,1-aminomutase
2469	 51.62	0	2934186..2934524	-	112	119358326	-	Cpha266_2558	-	hypothetical protein
2470	 47.95	0	2934521..2934910	-	129	119358327	-	Cpha266_2559	-	camphor resistance protein CrcB
2471	 46.75	0	2934932..2935162	-	76	119358328	-	Cpha266_2560	-	hypothetical protein
2472	 45.12	0	2935844..2936089	+	81	119358329	-	Cpha266_2561	-	hypothetical protein
2473	 54.74	+1	2936146..2938308	+	720	119358330	-	Cpha266_2562	-	formate dehydrogenase
2474	 55.91	+1	2938312..2938878	+	188	119358331	-	Cpha266_2563	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2475	 54.52	+1	2938881..2939876	+	331	119358332	-	Cpha266_2564	-	polysulphide reductase, NrfD
2476	 57.46	+1	2939929..2940645	+	238	119358333	-	Cpha266_2565	-	hypothetical protein
2477	 54.10	+1	2940683..2941279	-	198	119358334	-	Cpha266_2566	-	SOUL heme-binding protein
2478	 51.25	0	2941352..2942188	-	278	119358335	-	Cpha266_2567	-	IstB ATP binding domain-containing protein
2479	 50.89	0	2942194..2943765	-	523	119358336	-	Cpha266_2568	-	integrase catalytic subunit
2480	 50.77	0	2944271..2945704	-	477	119358337	-	Cpha266_2569	-	sulfide-quinone reductase
2481	 52.21	0	2945919..2946347	+	142	119358338	-	Cpha266_2570	-	Holliday junction resolvase YqgF
2482	 57.22	+1	2946470..2947051	+	193	119358339	pyrE	Cpha266_2571	-	orotate phosphoribosyltransferase
2483	 50.80	0	2947057..2947926	+	289	119358340	-	Cpha266_2572	-	prephenate dehydrogenase
2484	 54.08	+1	2947923..2948780	+	285	119358341	-	Cpha266_2573	-	NAD(+) kinase
2485	 56.19	+1	2948823..2950301	+	492	119358342	-	Cpha266_2574	-	hypothetical protein
2486	 54.76	+1	2950339..2950884	-	181	119358343	-	Cpha266_2575	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
2487	 54.15	+1	2950923..2951753	-	276	119358344	-	Cpha266_2576	-	2-dehydro-3-deoxyphosphooctonate aldolase
2488	 52.23	0	2951866..2953188	+	440	119358345	-	Cpha266_2577	-	ATPase
2489	 54.43	+1	2953213..2954340	+	375	119358346	-	Cpha266_2578	-	glycoside hydrolase family 3 protein
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.