IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.61   STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2345	 44.25	0	2808205..2808726	-	173	119358202	-	Cpha266_2434	-	hypothetical protein
2346	 48.15	0	2808945..2809214	-	89	119358203	-	Cpha266_2435	-	hypothetical protein
2347	 44.53	0	2809413..2810216	-	267	119358204	-	Cpha266_2436	-	hypothetical protein
2348	 57.41	+1	2810896..2813262	-	788	119358205	-	Cpha266_2437	-	hypothetical protein
2349	 53.09	0	2813292..2814779	-	495	119358206	-	Cpha266_2438	-	polysaccharide biosynthesis protein
2350	 54.24	+1	2814776..2815942	-	388	119358207	-	Cpha266_2439	-	glycosyl transferase, group 1
2351	 52.48	0	2815923..2816486	-	187	119358208	-	Cpha266_2440	-	hypothetical protein
2352	 50.63	0	2816483..2817355	-	290	119358209	-	Cpha266_2441	-	glycosyl transferase family protein
2353	 51.26	0	2817352..2818500	-	382	119358210	-	Cpha266_2442	-	glycosyl transferase, group 1
2354	 48.72	0	2818522..2818833	-	103	119358211	-	Cpha266_2443	-	phosphotransferase system, phosphocarrier protein HPr
2355	 48.93	0	2818836..2819303	-	155	119358212	-	Cpha266_2444	-	acetyltransferase
2356	 51.87	0	2819306..2820319	-	337	119358213	obgE	Cpha266_2445	-	GTPase ObgE
2357	 44.44	0	2820393..2820662	+	89	119358214	-	Cpha266_2446	-	exodeoxyribonuclease VII small subunit
2358	 49.02	0	2820669..2822096	-	475	119358215	gatB	Cpha266_2447	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
2359	 48.23	0	2822158..2822694	-	178	119358216	-	Cpha266_2448	-	hypothetical protein
2360	 50.87	0	2822951..2824279	-	442	119358217	-	Cpha266_2449	-	ATPase central domain-containing protein
2361	 45.67	0	2824533..2824832	-	99	119358218	-	Cpha266_2450	-	hypothetical protein
2362	 52.66	0	2825484..2826497	-	337	119358219	-	Cpha266_2451	-	von Willebrand factor, type A
2363	 51.69	0	2826534..2827568	-	344	119358220	-	Cpha266_2452	-	von Willebrand factor, type A
2364	 53.20	+1	2827757..2828677	-	306	119358221	-	Cpha266_2453	-	hypothetical protein
2365	 49.27	0	2828691..2829581	-	296	119358222	-	Cpha266_2454	-	hypothetical protein
2366	 52.85	0	2829624..2830622	-	332	119358223	-	Cpha266_2455	-	ATPase
2367	 46.05	0	2830819..2831046	-	75	119358224	-	Cpha266_2456	-	hypothetical protein
2368	 51.32	0	2831068..2832129	+	353	119358225	-	Cpha266_2457	-	O-sialoglycoprotein endopeptidase
2369	 45.76	0	2832192..2832545	+	117	119358226	-	Cpha266_2458	-	protein translocase subunit yajC
2370	 50.36	0	2832554..2833663	+	369	119358227	-	Cpha266_2459	-	carbamoyl phosphate synthase small subunit
2371	 52.37	0	2833742..2834881	+	379	119358228	-	Cpha266_2460	-	Serine--glyoxylate transaminase
2372	 47.83	0	2834995..2835663	+	222	119358229	-	Cpha266_2461	-	hypothetical protein
2373	 50.31	0	2835668..2837110	+	480	119358230	-	Cpha266_2462	-	radical SAM domain-containing protein
2374	 53.90	+1	2837186..2837608	+	140	119358231	-	Cpha266_2463	-	cytochrome c, class I
2375	 51.62	0	2837827..2838165	+	112	119358232	-	Cpha266_2464	-	cytochrome c, class I
2376	 49.80	0	2838252..2838506	+	84	119358233	-	Cpha266_2465	-	MtN3 and saliva related transmembrane protein
2377	 53.31	+1	2838596..2839396	+	266	119358234	-	Cpha266_2466	-	pyrroline-5-carboxylate reductase
2378	 49.23	0	2839407..2840765	+	452	119358235	-	Cpha266_2467	-	hypothetical protein
2379	 51.60	0	2840789..2842036	-	415	119358236	-	Cpha266_2468	-	molybdopterin molybdochelatase
2380	 49.84	0	2842033..2842971	-	312	119358237	moaC	Cpha266_2469	-	bifunctional molybdenum cofactor biosynthesis protein C/molybdopterin-binding protein
2381	 48.92	0	2843086..2843919	-	277	119358238	-	Cpha266_2470	-	glycerophosphoryl diester phosphodiesterase
2382	 45.35	0	2844092..2844607	-	171	119358239	-	Cpha266_2471	-	hypothetical protein
2383	 46.53	0	2844738..2845025	-	95	119358240	-	Cpha266_2472	-	hypothetical protein
2384	 49.63	0	2845205..2846695	+	496	119358241	-	Cpha266_2473	-	molybdopterin-guanine dinucleotide biosynthesis protein B
2385	 47.45	0	2846772..2847593	-	273	119358242	-	Cpha266_2474	-	ABC-3 protein
2386	 50.59	0	2847598..2848362	-	254	119358243	-	Cpha266_2475	-	ABC transporter related
2387	 49.58	0	2848359..2849300	-	313	119358244	-	Cpha266_2476	-	periplasmic solute binding protein
2388	 51.62	0	2849303..2849734	-	143	119358245	-	Cpha266_2477	-	ferric uptake regulator family protein
2389	 51.57	0	2849847..2851529	-	560	119358246	-	Cpha266_2478	-	2-isopropylmalate synthase
2390	 48.03	0	2851902..2852180	-	92	119358247	-	Cpha266_2479	-	excinuclease ABC subunit C
2391	 47.67	0	2852326..2852604	-	92	119358248	-	Cpha266_2480	-	excinuclease ABC subunit C
2392	 47.67	0	2852749..2853027	-	92	119358249	-	Cpha266_2481	-	hypothetical protein
2393	 47.67	0	2853172..2853450	-	92	119358250	-	Cpha266_2482	-	excinuclease ABC subunit C
2394	 47.67	0	2853596..2853874	-	92	119358251	-	Cpha266_2483	-	excinuclease ABC subunit C
2395	 47.67	0	2854019..2854297	-	92	119358252	-	Cpha266_2484	-	excinuclease ABC subunit C
2396	 47.67	0	2854442..2854720	-	92	119358253	-	Cpha266_2485	-	excinuclease ABC subunit C
2397	 47.67	0	2854865..2855143	-	92	119358254	-	Cpha266_2486	-	excinuclease ABC subunit C
2398	 43.75	-1	2855472..2855999	+	175	119358255	-	Cpha266_2487	-	hypothetical protein
2399	 53.65	+1	2856026..2856217	+	63	119358256	rpmF	Cpha266_2488	-	50S ribosomal protein L32
2400	 48.83	0	2856241..2857266	+	341	119358257	-	Cpha266_2489	-	putative glycerol-3-phosphate acyltransferase PlsX
2401	 49.80	0	2857361..2858350	+	329	119358258	-	Cpha266_2490	-	3-oxoacyl-(acyl carrier protein) synthase III
2402	 52.37	0	2858386..2859294	+	302	119358259	-	Cpha266_2491	-	[Acyl-carrier-protein] S-malonyltransferase
2403	 49.73	0	2859338..2860075	+	245	119358260	-	Cpha266_2492	-	3-oxoacyl-[acyl-carrier-protein] reductase
2404	 40.93	-1	2860163..2860399	+	78	119358261	-	Cpha266_2493	-	acyl carrier protein
2405	 50.84	0	2860448..2861704	+	418	119358262	-	Cpha266_2494	-	3-oxoacyl-[acyl-carrier-protein] synthase II
2406	 48.18	0	2861718..2862539	+	273	119358263	-	Cpha266_2495	-	ribonuclease III
2407	 50.79	0	2862739..2864199	+	486	119358264	-	Cpha266_2496	-	glycine dehydrogenase subunit 2
2408	 47.76	0	2864311..2864823	+	170	119358265	-	Cpha266_2497	-	HNH endonuclease
2409	 51.68	0	2864849..2865442	+	197	119358266	-	Cpha266_2498	-	CMP/dCMP deaminase, zinc-binding
2410	 50.51	0	2865580..2867349	+	589	119358267	-	Cpha266_2499	-	glycoside hydrolase family 3 protein
2411	 51.56	0	2867391..2868800	+	469	119358268	-	Cpha266_2500	-	chlorophyllide reductase subunit Z
2412	 51.78	0	2868951..2870978	+	675	119358269	-	Cpha266_2501	-	Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
2413	 46.19	0	2870994..2871623	+	209	119358270	infC	Cpha266_2502	-	translation initiation factor IF-3
2414	 41.54	-1	2871666..2871860	+	64	119358271	rpmI	Cpha266_2503	-	50S ribosomal protein L35
2415	 45.11	0	2871887..2872234	+	115	119358272	rplT	Cpha266_2504	-	50S ribosomal protein L20
2416	 51.95	0	2872251..2873276	+	341	119358273	-	Cpha266_2505	-	phenylalanyl-tRNA synthetase, alpha subunit
2417	 43.83	-1	2873286..2873933	-	215	119358274	-	Cpha266_2506	-	hypothetical protein
2418	 44.52	0	2873948..2874886	-	312	119358275	-	Cpha266_2507	-	hypothetical protein
2419	 43.26	-1	2875034..2875426	-	130	119358276	-	Cpha266_2508	-	hypothetical protein
2420	 48.46	0	2875636..2876091	-	151	119358277	rplI	Cpha266_2509	-	50S ribosomal protein L9
2421	 41.67	-1	2876128..2876391	-	87	119358278	rpsR	Cpha266_2510	-	30S ribosomal protein S18
2422	 43.67	-1	2876426..2876899	-	157	119358279	-	Cpha266_2511	-	single-strand binding protein
2423	 45.77	0	2876968..2877369	-	133	119358280	rpsF	Cpha266_2512	-	30S ribosomal protein S6
2424	 51.75	0	2877660..2878430	-	256	119358281	-	Cpha266_2513	-	exodeoxyribonuclease III Xth
2425	 51.80	0	2878427..2879428	-	333	119358282	-	Cpha266_2514	-	glycosyl transferase family protein
2426	 54.17	+1	2879434..2879961	-	175	119358283	-	Cpha266_2515	-	hypothetical protein
2427	 48.57	0	2880005..2880424	-	139	119358284	-	Cpha266_2516	-	thioesterase superfamily protein
2428	 52.74	0	2880756..2882744	+	662	119358285	-	Cpha266_2517	-	hypothetical protein
2429	 52.09	0	2882755..2883927	+	390	119358286	-	Cpha266_2518	-	peptidase M24
2430	 50.45	0	2884000..2884776	+	258	119358287	-	Cpha266_2519	-	electron transfer flavoprotein beta-subunit
2431	 51.04	0	2884789..2885703	+	304	119358288	-	Cpha266_2520	-	electron transfer flavoprotein, alpha subunit
2432	 52.53	0	2885754..2886446	-	230	119358289	-	Cpha266_2521	-	MscS mechanosensitive ion channel
2433	 49.64	0	2886486..2887466	-	326	119358290	-	Cpha266_2522	-	hypothetical protein
2434	 43.66	-1	2887701..2888465	+	254	119358291	-	Cpha266_2523	-	Type II site-specific deoxyribonuclease
2435	 45.26	0	2888446..2889552	-	368	119358292	-	Cpha266_2524	-	DNA methylase N-4/N-6 domain-containing protein
2436	 37.91	-2	2889700..2890158	-	152	119358293	-	Cpha266_2525	-	hypothetical protein
2437	 45.54	0	2890275..2891003	-	242	119358294	-	Cpha266_2526	-	mucin-associated surface protein (MASP)
2438	 42.69	-1	2891016..2891795	-	259	119358295	-	Cpha266_2527	-	hypothetical protein
2439	 50.55	0	2892749..2893654	+	301	119358296	-	Cpha266_2528	-	alpha/beta hydrolase fold
2440	 42.49	-1	2893871..2894602	+	243	119358297	-	Cpha266_2529	-	TPR repeat-containing protein
2441	 43.04	-1	2900390..2900698	+	102	119358298	-	Cpha266_2530	-	hypothetical protein
2442	 52.68	0	2901190..2902791	+	533	119358299	-	Cpha266_2531	-	hypothetical protein
2443	 50.76	0	2902860..2905148	-	762	119358300	-	Cpha266_2532	-	heavy metal translocating P-type ATPase
2444	 48.97	0	2905145..2905726	-	193	119358301	-	Cpha266_2533	-	hypothetical protein
48.61	MEAN

4.51	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.