IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2311	 37.61	-2	2786447..2786563	-	38	119358168	rpmJ	Cpha266_2400	-	50S ribosomal protein L36
2312	 39.73	-1	2786674..2786892	-	72	119358169	-	Cpha266_2401	-	translation initiation factor 1
2313	 48.37	0	2786930..2787727	-	265	119358170	-	Cpha266_2402	-	methionine aminopeptidase, type I
2314	 46.70	0	2787740..2789071	-	443	119358171	secY	Cpha266_2403	-	preprotein translocase subunit SecY
2315	 44.98	0	2789090..2789647	-	185	119358172	rplO	Cpha266_2404	-	50S ribosomal protein L15
2316	 41.94	-1	2789681..2789866	-	61	119358173	rpmD	Cpha266_2405	-	50S ribosomal protein L30
2317	 44.70	0	2789884..2790402	-	172	119358174	rpsE	Cpha266_2406	-	30S ribosomal protein S5
2318	 47.50	0	2790425..2790784	-	119	119358175	rplR	Cpha266_2407	-	50S ribosomal protein L18
2319	 46.11	0	2790839..2791378	-	179	119358176	rplF	Cpha266_2408	-	50S ribosomal protein L6
2320	 42.17	-1	2791405..2791800	-	131	119358177	rpsH	Cpha266_2409	-	30S ribosomal protein S8
2321	 47.78	0	2791867..2792136	-	89	119358178	rpsN	Cpha266_2410	-	30S ribosomal protein S14
2322	 44.56	0	2792154..2792741	-	195	119358179	rplE	Cpha266_2411	-	50S ribosomal protein L5
2323	 41.15	-1	2792798..2793040	-	80	119358180	rplX	Cpha266_2412	-	50S ribosomal protein L24
2324	 47.15	0	2793157..2793525	-	122	119358181	rplN	Cpha266_2413	-	50S ribosomal protein L14
2325	 43.14	-1	2793564..2793869	-	101	119358182	rpsQ	Cpha266_2414	-	30S ribosomal protein S17
2326	 43.96	-1	2793893..2794099	-	68	119358183	-	Cpha266_2415	-	50S ribosomal protein L29
2327	 45.95	0	2794132..2794551	-	139	119358184	rplP	Cpha266_2416	-	50S ribosomal protein L16
2328	 45.82	0	2794594..2795346	-	250	119358185	rpsC	Cpha266_2417	-	30S ribosomal protein S3
2329	 43.33	-1	2795362..2795721	-	119	119358186	rplV	Cpha266_2418	-	50S ribosomal protein L22
2330	 45.45	0	2795750..2796046	-	98	119358187	rpsS	Cpha266_2419	-	30S ribosomal protein S19
2331	 47.67	0	2796080..2796874	-	264	119358188	rplB	Cpha266_2420	-	50S ribosomal protein L2
2332	 42.31	-1	2796950..2797261	-	103	119358189	rplW	Cpha266_2421	-	50S ribosomal protein L23
2333	 45.30	0	2797294..2797920	-	208	119358190	rplD	Cpha266_2422	-	50S ribosomal protein L4
2334	 46.03	0	2797940..2798569	-	209	119358191	rplC	Cpha266_2423	-	50S ribosomal protein L3
2335	 43.91	-1	2798594..2798905	-	103	119358192	rpsJ	Cpha266_2424	-	30S ribosomal protein S10
2336	 48.56	0	2798984..2800165	-	393	119358193	-	Cpha266_2425	-	elongation factor Tu
2337	 49.50	0	2800227..2802341	-	704	119358194	-	Cpha266_2426	-	elongation factor G
2338	 50.21	0	2802386..2802853	-	155	119358195	-	Cpha266_2427	-	30S ribosomal protein S7
2339	 51.96	0	2802880..2803287	-	135	119358196	rpsL	Cpha266_2428	-	30S ribosomal protein S12
2340	 49.74	0	2803480..2804814	-	444	119358197	-	Cpha266_2429	-	hypothetical protein
2341	 51.33	0	2805267..2805605	+	112	119358198	-	Cpha266_2430	-	alkylphosphonate utilization operon protein PhnA
2342	 51.85	0	2806054..2806539	-	161	119358199	-	Cpha266_2431	-	PBP family phospholipid-binding protein
2343	 51.58	0	2806612..2806896	-	94	119358200	-	Cpha266_2432	-	hypothetical protein
2344	 54.25	+1	2806893..2807891	-	332	119358201	-	Cpha266_2433	-	hypothetical protein
2345	 44.25	0	2808205..2808726	-	173	119358202	-	Cpha266_2434	-	hypothetical protein
2346	 48.15	0	2808945..2809214	-	89	119358203	-	Cpha266_2435	-	hypothetical protein
2347	 44.53	0	2809413..2810216	-	267	119358204	-	Cpha266_2436	-	hypothetical protein
2348	 57.41	+1	2810896..2813262	-	788	119358205	-	Cpha266_2437	-	hypothetical protein
2349	 53.09	0	2813292..2814779	-	495	119358206	-	Cpha266_2438	-	polysaccharide biosynthesis protein
2350	 54.24	+1	2814776..2815942	-	388	119358207	-	Cpha266_2439	-	glycosyl transferase, group 1
2351	 52.48	0	2815923..2816486	-	187	119358208	-	Cpha266_2440	-	hypothetical protein
2352	 50.63	0	2816483..2817355	-	290	119358209	-	Cpha266_2441	-	glycosyl transferase family protein
2353	 51.26	0	2817352..2818500	-	382	119358210	-	Cpha266_2442	-	glycosyl transferase, group 1
2354	 48.72	0	2818522..2818833	-	103	119358211	-	Cpha266_2443	-	phosphotransferase system, phosphocarrier protein HPr
2355	 48.93	0	2818836..2819303	-	155	119358212	-	Cpha266_2444	-	acetyltransferase
2356	 51.87	0	2819306..2820319	-	337	119358213	obgE	Cpha266_2445	-	GTPase ObgE
2357	 44.44	0	2820393..2820662	+	89	119358214	-	Cpha266_2446	-	exodeoxyribonuclease VII small subunit
2358	 49.02	0	2820669..2822096	-	475	119358215	gatB	Cpha266_2447	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
2359	 48.23	0	2822158..2822694	-	178	119358216	-	Cpha266_2448	-	hypothetical protein
2360	 50.87	0	2822951..2824279	-	442	119358217	-	Cpha266_2449	-	ATPase central domain-containing protein
2361	 45.67	0	2824533..2824832	-	99	119358218	-	Cpha266_2450	-	hypothetical protein
2362	 52.66	0	2825484..2826497	-	337	119358219	-	Cpha266_2451	-	von Willebrand factor, type A
2363	 51.69	0	2826534..2827568	-	344	119358220	-	Cpha266_2452	-	von Willebrand factor, type A
2364	 53.20	+1	2827757..2828677	-	306	119358221	-	Cpha266_2453	-	hypothetical protein
2365	 49.27	0	2828691..2829581	-	296	119358222	-	Cpha266_2454	-	hypothetical protein
2366	 52.85	0	2829624..2830622	-	332	119358223	-	Cpha266_2455	-	ATPase
2367	 46.05	0	2830819..2831046	-	75	119358224	-	Cpha266_2456	-	hypothetical protein
2368	 51.32	0	2831068..2832129	+	353	119358225	-	Cpha266_2457	-	O-sialoglycoprotein endopeptidase
2369	 45.76	0	2832192..2832545	+	117	119358226	-	Cpha266_2458	-	protein translocase subunit yajC
2370	 50.36	0	2832554..2833663	+	369	119358227	-	Cpha266_2459	-	carbamoyl phosphate synthase small subunit
2371	 52.37	0	2833742..2834881	+	379	119358228	-	Cpha266_2460	-	Serine--glyoxylate transaminase
2372	 47.83	0	2834995..2835663	+	222	119358229	-	Cpha266_2461	-	hypothetical protein
2373	 50.31	0	2835668..2837110	+	480	119358230	-	Cpha266_2462	-	radical SAM domain-containing protein
2374	 53.90	+1	2837186..2837608	+	140	119358231	-	Cpha266_2463	-	cytochrome c, class I
2375	 51.62	0	2837827..2838165	+	112	119358232	-	Cpha266_2464	-	cytochrome c, class I
2376	 49.80	0	2838252..2838506	+	84	119358233	-	Cpha266_2465	-	MtN3 and saliva related transmembrane protein
2377	 53.31	+1	2838596..2839396	+	266	119358234	-	Cpha266_2466	-	pyrroline-5-carboxylate reductase
2378	 49.23	0	2839407..2840765	+	452	119358235	-	Cpha266_2467	-	hypothetical protein
2379	 51.60	0	2840789..2842036	-	415	119358236	-	Cpha266_2468	-	molybdopterin molybdochelatase
2380	 49.84	0	2842033..2842971	-	312	119358237	moaC	Cpha266_2469	-	bifunctional molybdenum cofactor biosynthesis protein C/molybdopterin-binding protein
2381	 48.92	0	2843086..2843919	-	277	119358238	-	Cpha266_2470	-	glycerophosphoryl diester phosphodiesterase
2382	 45.35	0	2844092..2844607	-	171	119358239	-	Cpha266_2471	-	hypothetical protein
2383	 46.53	0	2844738..2845025	-	95	119358240	-	Cpha266_2472	-	hypothetical protein
2384	 49.63	0	2845205..2846695	+	496	119358241	-	Cpha266_2473	-	molybdopterin-guanine dinucleotide biosynthesis protein B
2385	 47.45	0	2846772..2847593	-	273	119358242	-	Cpha266_2474	-	ABC-3 protein
2386	 50.59	0	2847598..2848362	-	254	119358243	-	Cpha266_2475	-	ABC transporter related
2387	 49.58	0	2848359..2849300	-	313	119358244	-	Cpha266_2476	-	periplasmic solute binding protein
2388	 51.62	0	2849303..2849734	-	143	119358245	-	Cpha266_2477	-	ferric uptake regulator family protein
2389	 51.57	0	2849847..2851529	-	560	119358246	-	Cpha266_2478	-	2-isopropylmalate synthase
2390	 48.03	0	2851902..2852180	-	92	119358247	-	Cpha266_2479	-	excinuclease ABC subunit C
2391	 47.67	0	2852326..2852604	-	92	119358248	-	Cpha266_2480	-	excinuclease ABC subunit C
2392	 47.67	0	2852749..2853027	-	92	119358249	-	Cpha266_2481	-	hypothetical protein
2393	 47.67	0	2853172..2853450	-	92	119358250	-	Cpha266_2482	-	excinuclease ABC subunit C
2394	 47.67	0	2853596..2853874	-	92	119358251	-	Cpha266_2483	-	excinuclease ABC subunit C
2395	 47.67	0	2854019..2854297	-	92	119358252	-	Cpha266_2484	-	excinuclease ABC subunit C
2396	 47.67	0	2854442..2854720	-	92	119358253	-	Cpha266_2485	-	excinuclease ABC subunit C
2397	 47.67	0	2854865..2855143	-	92	119358254	-	Cpha266_2486	-	excinuclease ABC subunit C
2398	 43.75	-1	2855472..2855999	+	175	119358255	-	Cpha266_2487	-	hypothetical protein
2399	 53.65	+1	2856026..2856217	+	63	119358256	rpmF	Cpha266_2488	-	50S ribosomal protein L32
2400	 48.83	0	2856241..2857266	+	341	119358257	-	Cpha266_2489	-	putative glycerol-3-phosphate acyltransferase PlsX
2401	 49.80	0	2857361..2858350	+	329	119358258	-	Cpha266_2490	-	3-oxoacyl-(acyl carrier protein) synthase III
2402	 52.37	0	2858386..2859294	+	302	119358259	-	Cpha266_2491	-	[Acyl-carrier-protein] S-malonyltransferase
2403	 49.73	0	2859338..2860075	+	245	119358260	-	Cpha266_2492	-	3-oxoacyl-[acyl-carrier-protein] reductase
2404	 40.93	-1	2860163..2860399	+	78	119358261	-	Cpha266_2493	-	acyl carrier protein
2405	 50.84	0	2860448..2861704	+	418	119358262	-	Cpha266_2494	-	3-oxoacyl-[acyl-carrier-protein] synthase II
2406	 48.18	0	2861718..2862539	+	273	119358263	-	Cpha266_2495	-	ribonuclease III
2407	 50.79	0	2862739..2864199	+	486	119358264	-	Cpha266_2496	-	glycine dehydrogenase subunit 2
2408	 47.76	0	2864311..2864823	+	170	119358265	-	Cpha266_2497	-	HNH endonuclease
2409	 51.68	0	2864849..2865442	+	197	119358266	-	Cpha266_2498	-	CMP/dCMP deaminase, zinc-binding
2410	 50.51	0	2865580..2867349	+	589	119358267	-	Cpha266_2499	-	glycoside hydrolase family 3 protein
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.