IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2242	 54.24	+1	2687964..2689001	-	345	119358099	-	Cpha266_2329	-	hypothetical protein
2243	 50.94	0	2689037..2690359	-	440	119358100	-	Cpha266_2330	-	capsule polysaccharide biosynthesis
2244	 53.83	+1	2690356..2692443	-	695	119358101	-	Cpha266_2331	-	capsule polysaccharide biosynthesis
2245	 51.63	0	2692766..2694241	-	491	119358102	-	Cpha266_2332	-	glycosyl transferase family protein
2246	 52.30	0	2694331..2695569	-	412	119358103	-	Cpha266_2333	-	glycosyl transferase, group 1
2247	 51.64	0	2695747..2702148	-	2133	119358104	-	Cpha266_2334	-	lipase, class 3
2248	 52.11	0	2702662..2709258	-	2198	119358105	-	Cpha266_2335	-	hemolysin-type calcium-binding region
2249	 48.35	0	2709759..2710244	+	161	119358106	-	Cpha266_2336	-	transposase IS3/IS911 family protein
2250	 43.50	-1	2710801..2711970	-	389	119358107	-	Cpha266_2339	-	transposase, IS4 family protein
2251	 30.53	-2	2712633..2713736	-	367	119358108	-	Cpha266_2340	-	hypothetical protein
2252	 33.48	-2	2713816..2715870	-	684	119358109	-	Cpha266_2341	-	glycosyl transferase family protein
2253	 38.61	-2	2715923..2717968	-	681	119358110	-	Cpha266_2342	-	FkbM family methyltransferase
2254	 45.99	0	2717968..2720022	-	684	119358111	-	Cpha266_2343	-	chromosome segregation ATPases-like
2255	 46.64	0	2720127..2720780	-	217	119358112	-	Cpha266_2344	-	ABC transporter related
2256	 48.28	0	2720777..2721559	-	260	119358113	-	Cpha266_2345	-	ABC-2 type transporter
2257	 50.25	0	2721566..2722765	-	399	119358114	-	Cpha266_2346	-	lipopolysaccharide biosynthesis
2258	 51.37	0	2722785..2723876	-	363	119358115	-	Cpha266_2347	-	polysaccharide export protein
2259	 52.91	0	2726102..2732017	-	1971	119358116	-	Cpha266_2348	-	outer membrane autotransporter
2260	 39.80	-1	2732105..2732506	-	133	119358117	-	Cpha266_2349	-	hypothetical protein
2261	 45.89	0	2732875..2736036	-	1053	119358118	-	Cpha266_2350	-	PAS/PAC sensor hybrid histidine kinase
2262	 50.28	0	2737283..2738173	-	296	119358119	-	Cpha266_2351	-	hypothetical protein
2263	 47.48	0	2738422..2738838	-	138	119358120	-	Cpha266_2352	-	class I peptide chain release factor
2264	 50.00	0	2738953..2739390	+	145	119358121	-	Cpha266_2353	-	hypothetical protein
2265	 44.60	0	2739487..2739699	-	70	119358122	-	Cpha266_2354	-	cold-shock DNA-binding protein family protein
2266	 51.10	0	2740158..2741108	-	316	119358123	-	Cpha266_2355	-	WD-40 repeat-containing protein
2267	 48.38	0	2741188..2742330	-	380	119358124	-	Cpha266_2356	-	glycosyl transferase family protein
2268	 48.36	0	2742398..2743282	-	294	119358125	hisG	Cpha266_2357	-	ATP phosphoribosyltransferase
2269	 45.82	0	2743311..2744063	-	250	119358126	-	Cpha266_2358	-	metallophosphoesterase
2270	 49.58	0	2744068..2744781	-	237	119358127	-	Cpha266_2359	-	phosphatidate cytidylyltransferase
2271	 50.30	0	2744935..2745936	-	333	119358128	-	Cpha266_2360	-	bacteriochlorophyll c synthase
2272	 51.77	0	2746059..2747387	-	442	119358129	-	Cpha266_2361	-	RNA modification protein
2273	 48.69	0	2747534..2748145	-	203	119358130	-	Cpha266_2362	-	NifU domain-containing protein
2274	 49.21	0	2748129..2749325	-	398	119358131	-	Cpha266_2363	-	aminotransferase, class V
2275	 49.62	0	2749391..2750323	-	310	119358132	-	Cpha266_2364	-	cysteine synthase
2276	 52.20	0	2750406..2751110	-	234	119358133	-	Cpha266_2365	-	short-chain dehydrogenase/reductase SDR
2277	 48.49	0	2751273..2752169	-	298	119358134	-	Cpha266_2366	-	helix-turn-helix domain-containing protein
2278	 51.47	0	2752400..2753011	-	203	119358135	-	Cpha266_2367	-	hypothetical protein
2279	 51.30	0	2753396..2753818	+	140	119358136	-	Cpha266_2368	-	nucleoside diphosphate kinase
2280	 48.51	0	2753857..2754930	-	357	119358137	-	Cpha266_2369	-	hypothetical protein
2281	 51.67	0	2754967..2755713	-	248	119358138	-	Cpha266_2370	-	hypothetical protein
2282	 49.14	0	2755724..2756419	-	231	119358139	-	Cpha266_2371	-	phosphoribosyltransferase
2283	 53.05	0	2756441..2757439	-	332	119358140	-	Cpha266_2372	-	ROK family protein
2284	 51.19	0	2757448..2758242	-	264	119358141	-	Cpha266_2373	-	UDP-N-acetylglucosamine acyltransferase
2285	 50.23	0	2758249..2760894	-	881	119358142	-	Cpha266_2374	-	hypothetical protein
2286	 51.02	0	2760925..2762049	-	374	119358143	-	Cpha266_2375	-	putative oxygen-independent coproporphyrinogen III oxidase
2287	 51.11	0	2762086..2762670	-	194	119358144	-	Cpha266_2376	-	histidinol-phosphate phosphatase family protein
2288	 47.01	0	2762677..2764146	-	489	119358145	-	Cpha266_2377	-	glycogen/starch synthases, ADP-glucose type
2289	 53.35	+1	2764341..2765369	+	342	119358146	-	Cpha266_2378	-	hypothetical protein
2290	 52.14	0	2765386..2765970	+	194	119358147	-	Cpha266_2379	-	bacteriochlorophyll 4-vinyl reductase
2291	 52.78	0	2766412..2768262	+	616	119358148	-	Cpha266_2380	-	hypothetical protein
2292	 46.53	0	2768276..2768563	+	95	119358149	-	Cpha266_2381	-	hypothetical protein
2293	 51.44	0	2768664..2769983	+	439	119358150	-	Cpha266_2382	-	hypothetical protein
2294	 51.25	0	2770044..2770880	-	278	119358151	-	Cpha266_2383	-	IstB ATP binding domain-containing protein
2295	 50.89	0	2770886..2772457	-	523	119358152	-	Cpha266_2384	-	integrase catalytic subunit
2296	 48.85	0	2772527..2772874	+	115	119358153	-	Cpha266_2385	-	hypothetical protein
2297	 50.85	0	2773622..2774449	-	275	119358154	chlL	Cpha266_2386	-	protochlorophyllide reductase iron-sulfur ATP-binding protein
2298	 54.42	+1	2774487..2776094	-	535	119358155	-	Cpha266_2387	-	light-independent protochlorophyllide reductase subunit B
2299	 51.54	0	2776134..2777396	-	420	119358156	-	Cpha266_2388	-	light-independent protochlorophyllide reductase subunit N
2300	 52.70	0	2777545..2777859	-	104	119358157	-	Cpha266_2389	-	hypothetical protein
2301	 49.43	0	2777878..2779182	-	434	119358158	-	Cpha266_2390	-	adenylosuccinate synthetase
2302	 45.60	0	2779193..2779771	-	192	119358159	-	Cpha266_2391	-	GTPase EngB
2303	 48.18	0	2779938..2781392	+	484	119358160	cysS	Cpha266_2392	-	cysteinyl-tRNA synthetase
2304	 43.31	-1	2781389..2782501	-	370	119358161	-	Cpha266_2393	-	mannose-1-phosphate guanylyltransferase (GDP)
2305	 44.39	0	2782699..2783367	+	222	119358162	gidB	Cpha266_2394	-	glucose-inhibited division protein B
2306	 44.82	0	2783451..2783894	-	147	119358163	rplQ	Cpha266_2395	-	50S ribosomal protein L17
2307	 42.38	-1	2783943..2784926	-	327	119358164	-	Cpha266_2396	-	DNA-directed RNA polymerase subunit alpha
2308	 47.22	0	2784955..2785566	-	203	119358165	rpsD	Cpha266_2397	-	30S ribosomal protein S4
2309	 49.74	0	2785604..2785987	-	127	119358166	-	Cpha266_2398	-	30S ribosomal protein S11
2310	 47.62	0	2786034..2786411	-	125	119358167	rpsM	Cpha266_2399	-	30S ribosomal protein S13
2311	 37.61	-2	2786447..2786563	-	38	119358168	rpmJ	Cpha266_2400	-	50S ribosomal protein L36
2312	 39.73	-1	2786674..2786892	-	72	119358169	-	Cpha266_2401	-	translation initiation factor 1
2313	 48.37	0	2786930..2787727	-	265	119358170	-	Cpha266_2402	-	methionine aminopeptidase, type I
2314	 46.70	0	2787740..2789071	-	443	119358171	secY	Cpha266_2403	-	preprotein translocase subunit SecY
2315	 44.98	0	2789090..2789647	-	185	119358172	rplO	Cpha266_2404	-	50S ribosomal protein L15
2316	 41.94	-1	2789681..2789866	-	61	119358173	rpmD	Cpha266_2405	-	50S ribosomal protein L30
2317	 44.70	0	2789884..2790402	-	172	119358174	rpsE	Cpha266_2406	-	30S ribosomal protein S5
2318	 47.50	0	2790425..2790784	-	119	119358175	rplR	Cpha266_2407	-	50S ribosomal protein L18
2319	 46.11	0	2790839..2791378	-	179	119358176	rplF	Cpha266_2408	-	50S ribosomal protein L6
2320	 42.17	-1	2791405..2791800	-	131	119358177	rpsH	Cpha266_2409	-	30S ribosomal protein S8
2321	 47.78	0	2791867..2792136	-	89	119358178	rpsN	Cpha266_2410	-	30S ribosomal protein S14
2322	 44.56	0	2792154..2792741	-	195	119358179	rplE	Cpha266_2411	-	50S ribosomal protein L5
2323	 41.15	-1	2792798..2793040	-	80	119358180	rplX	Cpha266_2412	-	50S ribosomal protein L24
2324	 47.15	0	2793157..2793525	-	122	119358181	rplN	Cpha266_2413	-	50S ribosomal protein L14
2325	 43.14	-1	2793564..2793869	-	101	119358182	rpsQ	Cpha266_2414	-	30S ribosomal protein S17
2326	 43.96	-1	2793893..2794099	-	68	119358183	-	Cpha266_2415	-	50S ribosomal protein L29
2327	 45.95	0	2794132..2794551	-	139	119358184	rplP	Cpha266_2416	-	50S ribosomal protein L16
2328	 45.82	0	2794594..2795346	-	250	119358185	rpsC	Cpha266_2417	-	30S ribosomal protein S3
2329	 43.33	-1	2795362..2795721	-	119	119358186	rplV	Cpha266_2418	-	50S ribosomal protein L22
2330	 45.45	0	2795750..2796046	-	98	119358187	rpsS	Cpha266_2419	-	30S ribosomal protein S19
2331	 47.67	0	2796080..2796874	-	264	119358188	rplB	Cpha266_2420	-	50S ribosomal protein L2
2332	 42.31	-1	2796950..2797261	-	103	119358189	rplW	Cpha266_2421	-	50S ribosomal protein L23
2333	 45.30	0	2797294..2797920	-	208	119358190	rplD	Cpha266_2422	-	50S ribosomal protein L4
2334	 46.03	0	2797940..2798569	-	209	119358191	rplC	Cpha266_2423	-	50S ribosomal protein L3
2335	 43.91	-1	2798594..2798905	-	103	119358192	rpsJ	Cpha266_2424	-	30S ribosomal protein S10
2336	 48.56	0	2798984..2800165	-	393	119358193	-	Cpha266_2425	-	elongation factor Tu
2337	 49.50	0	2800227..2802341	-	704	119358194	-	Cpha266_2426	-	elongation factor G
2338	 50.21	0	2802386..2802853	-	155	119358195	-	Cpha266_2427	-	30S ribosomal protein S7
2339	 51.96	0	2802880..2803287	-	135	119358196	rpsL	Cpha266_2428	-	30S ribosomal protein S12
2340	 49.74	0	2803480..2804814	-	444	119358197	-	Cpha266_2429	-	hypothetical protein
2341	 51.33	0	2805267..2805605	+	112	119358198	-	Cpha266_2430	-	alkylphosphonate utilization operon protein PhnA
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.