IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2174	 61.22	+2	2585800..2586588	-	262	119358031	-	Cpha266_2259	-	hypothetical protein
2175	 61.34	+2	2586597..2588135	-	512	119358032	-	Cpha266_2260	-	ATPase central domain-containing protein
2176	 61.17	+2	2588324..2589943	-	539	119358033	-	Cpha266_2261	-	DnaK like protein
2177	 61.14	+2	2589966..2591321	-	451	119358034	-	Cpha266_2262	-	hypothetical protein
2178	 50.71	0	2592471..2594162	-	563	119358035	-	Cpha266_2263	-	sulfatase
2179	 58.72	+2	2594437..2595744	-	435	119358036	-	Cpha266_2264	-	HipA domain-containing protein
2180	 61.78	+2	2595741..2596088	-	115	119358037	-	Cpha266_2265	-	helix-turn-helix domain-containing protein
2181	 57.37	+1	2596532..2597338	-	268	119358038	-	Cpha266_2266	-	short-chain dehydrogenase/reductase SDR
2182	 49.65	0	2597917..2598345	-	142	119358039	-	Cpha266_2267	-	peptidylprolyl isomerase, FKBP-type
2183	 51.15	0	2598500..2599588	-	362	119358040	-	Cpha266_2268	-	MscS mechanosensitive ion channel
2184	 45.92	0	2599665..2600864	-	399	119358041	-	Cpha266_2269	-	FAD dependent oxidoreductase
2185	 50.20	0	2602041..2603261	+	406	119358042	-	Cpha266_2270	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
2186	 52.30	0	2604148..2604669	-	173	119358043	-	Cpha266_2271	-	acetyltransferase
2187	 48.71	0	2604771..2605505	+	244	119358044	-	Cpha266_2272	-	ABC transporter related
2188	 48.70	0	2605721..2607217	+	498	119358045	-	Cpha266_2273	-	radical SAM domain-containing protein
2189	 51.91	0	2607447..2608856	+	469	119358046	-	Cpha266_2274	-	metal dependent phosphohydrolase
2190	 48.93	0	2608903..2609229	+	108	119358047	-	Cpha266_2275	-	hypothetical protein
2191	 55.09	+1	2609233..2610027	+	264	119358048	-	Cpha266_2276	-	alpha/beta hydrolase fold
2192	 51.42	0	2610038..2611342	-	434	119358049	-	Cpha266_2277	-	3-phosphoshikimate 1-carboxyvinyltransferase
2193	 43.43	-1	2611425..2611622	-	65	119358050	rpsU	Cpha266_2278	-	30S ribosomal protein S21
2194	 47.77	0	2611648..2612208	-	186	119358051	-	Cpha266_2279	-	hypothetical protein
2195	 48.70	0	2612345..2613724	-	459	119358052	-	Cpha266_2280	-	cysteine synthase
2196	 46.25	0	2613986..2614519	+	177	119358053	-	Cpha266_2281	-	hypothetical protein
2197	 47.57	0	2614677..2615252	+	191	119358054	-	Cpha266_2282	-	hypothetical protein
2198	 40.78	-1	2615282..2615590	+	102	119358055	-	Cpha266_2283	-	hypothetical protein
2199	 49.07	0	2615598..2616728	+	376	119358056	-	Cpha266_2284	-	alanine racemase
2200	 46.97	0	2616743..2617270	+	175	119358057	-	Cpha266_2285	-	helix-hairpin-helix DNA-binding motif-containing protein
2201	 49.05	0	2617270..2618166	+	298	119358058	-	Cpha266_2286	-	hypothetical protein
2202	 51.81	0	2618147..2619169	-	340	119358059	-	Cpha266_2287	-	aspartate semialdehyde dehydrogenase
2203	 49.62	0	2619183..2620226	-	347	119358060	-	Cpha266_2288	-	nifR3 family TIM-barrel protein
2204	 48.91	0	2620223..2621275	-	350	119358061	recA	Cpha266_2289	-	recombinase A
2205	 52.42	0	2621313..2622302	-	329	119358062	-	Cpha266_2290	-	NAD-dependent epimerase/dehydratase
2206	 47.62	0	2622474..2623796	+	440	119358063	-	Cpha266_2291	-	peptidase M16 domain-containing protein
2207	 47.20	0	2623882..2625165	+	427	119358064	-	Cpha266_2292	-	trigger factor
2208	 47.95	0	2625277..2626152	-	291	119358065	-	Cpha266_2293	-	nicotinate-nucleotide pyrophosphorylase [carboxylating]
2209	 43.12	-1	2626394..2626771	+	125	119358066	-	Cpha266_2294	-	dihydroneopterin aldolase
2210	 51.79	0	2626775..2627332	+	185	119358067	-	Cpha266_2295	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
2211	 55.75	+1	2629249..2629596	+	115	119358068	-	Cpha266_2296	-	hypothetical protein
2212	 45.89	0	2629745..2630899	-	384	119358069	-	Cpha266_2297	-	arsenite-activated ATPase ArsA
2213	 45.77	0	2630914..2632755	-	613	119358070	-	Cpha266_2298	-	hypothetical protein
2214	 46.75	0	2633029..2633274	-	81	119358071	-	Cpha266_2299	-	bacteriochlorophyll C binding protein
2215	 48.33	0	2633406..2633825	-	139	119358072	-	Cpha266_2300	-	chlorosome envelope protein C
2216	 46.06	0	2633956..2635173	-	405	119358073	-	Cpha266_2301	-	arsenite-activated ATPase ArsA
2217	 51.84	0	2635369..2636238	+	289	119358074	-	Cpha266_2302	-	dihydroorotate oxidase B, electron transfer subunit
2218	 53.10	0	2636332..2636847	+	171	119358075	-	Cpha266_2303	-	single-strand binding protein
2219	 48.51	0	2636831..2637904	+	357	119358076	-	Cpha266_2304	-	DNA polymerase III, delta subunit
2220	 54.52	+1	2638509..2639504	-	331	119358077	-	Cpha266_2305	-	NAD-dependent epimerase/dehydratase
2221	 49.79	0	2639735..2640949	+	404	119358078	-	Cpha266_2306	-	8-amino-7-oxononanoate synthase
2222	 51.25	0	2641644..2642480	-	278	119358079	-	Cpha266_2308	-	IstB ATP binding domain-containing protein
2223	 50.89	0	2642486..2644057	-	523	119358080	-	Cpha266_2309	-	integrase catalytic subunit
2224	 54.49	+1	2644105..2646552	+	815	119358081	-	Cpha266_2310	-	TonB-dependent receptor
2225	 52.44	0	2646712..2650515	+	1267	119358082	-	Cpha266_2311	-	hydrogenobyrinic acid a,c-diamide cobaltochelatase
2226	 44.85	0	2651523..2651930	+	135	119358083	-	Cpha266_2312	-	hypothetical protein
2227	 50.95	0	2652104..2655946	+	1280	119358084	-	Cpha266_2313	-	magnesium chelatase
2228	 45.98	0	2655992..2656687	+	231	119358085	-	Cpha266_2314	-	Mg-protoporphyrin IX methyl transferase
2229	 50.15	0	2656862..2658502	+	546	119358086	-	Cpha266_2315	-	magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase
2230	 45.00	0	2658585..2659004	-	139	119358087	-	Cpha266_2316	-	heat shock protein Hsp20
2231	 38.05	-2	2659860..2660156	-	98	119358088	-	Cpha266_2317	-	excinuclease ABC subunit C
2232	 50.70	0	2661040..2662260	-	406	119358089	-	Cpha266_2318	-	glycosyl transferase, group 1
2233	 50.55	0	2662326..2670749	-	2807	119358090	-	Cpha266_2319	-	FG-GAP repeat-containing protein
2234	 51.25	0	2670888..2671724	-	278	119358091	-	Cpha266_2320	-	IstB ATP binding domain-containing protein
2235	 50.89	0	2671730..2673301	-	523	119358092	-	Cpha266_2321	-	integrase catalytic subunit
2236	 44.44	0	2673868..2674560	-	230	119358093	-	Cpha266_2322	-	hypothetical protein
2237	 44.63	0	2674557..2675105	-	182	119358094	-	Cpha266_2323	-	hypothetical protein
2238	 45.38	0	2675172..2675528	-	118	119358095	-	Cpha266_2324	-	transposase, IS4
2239	 49.65	0	2676519..2683922	-	2467	119358096	-	Cpha266_2326	-	hemolysin-type calcium-binding region
2240	 40.74	-1	2684078..2684320	-	80	119358097	-	Cpha266_2327	-	hypothetical protein
2241	 53.55	+1	2684336..2687926	-	1196	119358098	-	Cpha266_2328	-	ATPase, BadF/BadG/BcrA/BcrD type
2242	 54.24	+1	2687964..2689001	-	345	119358099	-	Cpha266_2329	-	hypothetical protein
2243	 50.94	0	2689037..2690359	-	440	119358100	-	Cpha266_2330	-	capsule polysaccharide biosynthesis
2244	 53.83	+1	2690356..2692443	-	695	119358101	-	Cpha266_2331	-	capsule polysaccharide biosynthesis
2245	 51.63	0	2692766..2694241	-	491	119358102	-	Cpha266_2332	-	glycosyl transferase family protein
2246	 52.30	0	2694331..2695569	-	412	119358103	-	Cpha266_2333	-	glycosyl transferase, group 1
2247	 51.64	0	2695747..2702148	-	2133	119358104	-	Cpha266_2334	-	lipase, class 3
2248	 52.11	0	2702662..2709258	-	2198	119358105	-	Cpha266_2335	-	hemolysin-type calcium-binding region
2249	 48.35	0	2709759..2710244	+	161	119358106	-	Cpha266_2336	-	transposase IS3/IS911 family protein
2250	 43.50	-1	2710801..2711970	-	389	119358107	-	Cpha266_2339	-	transposase, IS4 family protein
2251	 30.53	-2	2712633..2713736	-	367	119358108	-	Cpha266_2340	-	hypothetical protein
2252	 33.48	-2	2713816..2715870	-	684	119358109	-	Cpha266_2341	-	glycosyl transferase family protein
2253	 38.61	-2	2715923..2717968	-	681	119358110	-	Cpha266_2342	-	FkbM family methyltransferase
2254	 45.99	0	2717968..2720022	-	684	119358111	-	Cpha266_2343	-	chromosome segregation ATPases-like
2255	 46.64	0	2720127..2720780	-	217	119358112	-	Cpha266_2344	-	ABC transporter related
2256	 48.28	0	2720777..2721559	-	260	119358113	-	Cpha266_2345	-	ABC-2 type transporter
2257	 50.25	0	2721566..2722765	-	399	119358114	-	Cpha266_2346	-	lipopolysaccharide biosynthesis
2258	 51.37	0	2722785..2723876	-	363	119358115	-	Cpha266_2347	-	polysaccharide export protein
2259	 52.91	0	2726102..2732017	-	1971	119358116	-	Cpha266_2348	-	outer membrane autotransporter
2260	 39.80	-1	2732105..2732506	-	133	119358117	-	Cpha266_2349	-	hypothetical protein
2261	 45.89	0	2732875..2736036	-	1053	119358118	-	Cpha266_2350	-	PAS/PAC sensor hybrid histidine kinase
2262	 50.28	0	2737283..2738173	-	296	119358119	-	Cpha266_2351	-	hypothetical protein
2263	 47.48	0	2738422..2738838	-	138	119358120	-	Cpha266_2352	-	class I peptide chain release factor
2264	 50.00	0	2738953..2739390	+	145	119358121	-	Cpha266_2353	-	hypothetical protein
2265	 44.60	0	2739487..2739699	-	70	119358122	-	Cpha266_2354	-	cold-shock DNA-binding protein family protein
2266	 51.10	0	2740158..2741108	-	316	119358123	-	Cpha266_2355	-	WD-40 repeat-containing protein
2267	 48.38	0	2741188..2742330	-	380	119358124	-	Cpha266_2356	-	glycosyl transferase family protein
2268	 48.36	0	2742398..2743282	-	294	119358125	hisG	Cpha266_2357	-	ATP phosphoribosyltransferase
2269	 45.82	0	2743311..2744063	-	250	119358126	-	Cpha266_2358	-	metallophosphoesterase
2270	 49.58	0	2744068..2744781	-	237	119358127	-	Cpha266_2359	-	phosphatidate cytidylyltransferase
2271	 50.30	0	2744935..2745936	-	333	119358128	-	Cpha266_2360	-	bacteriochlorophyll c synthase
2272	 51.77	0	2746059..2747387	-	442	119358129	-	Cpha266_2361	-	RNA modification protein
2273	 48.69	0	2747534..2748145	-	203	119358130	-	Cpha266_2362	-	NifU domain-containing protein
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.