IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
172	 47.96	0	208787..209203	-	138	119356029	-	Cpha266_0182	-	hypothetical protein
173	 49.55	0	209243..210568	-	441	119356030	-	Cpha266_0183	-	outer membrane efflux protein
174	 40.94	-1	210575..210850	-	91	119356031	-	Cpha266_0184	-	hypothetical protein
175	 49.14	0	210923..211795	-	290	119356032	-	Cpha266_0185	-	alpha/beta hydrolase fold
176	 45.05	0	211792..212448	-	218	119356033	-	Cpha266_0186	-	isoprenylcysteine carboxyl methyltransferase
177	 44.10	-1	212717..213394	+	225	119356034	-	Cpha266_0187	-	hypothetical protein
178	 44.52	0	213535..214821	+	428	119356035	-	Cpha266_0188	-	coenzyme F420 hydrogenase/dehydrogenase beta subunit
179	 47.16	0	214842..215615	+	257	119356036	-	Cpha266_0189	-	short-chain dehydrogenase/reductase SDR
180	 48.44	0	215789..216013	-	74	119356037	-	Cpha266_0190	-	hypothetical protein
181	 45.90	0	216052..216417	-	121	119356038	-	Cpha266_0191	-	hypothetical protein
182	 44.62	0	216448..217989	-	513	119356039	-	Cpha266_0192	-	hypothetical protein
183	 44.14	0	218179..218400	+	73	119356040	-	Cpha266_0193	-	hypothetical protein
184	 55.78	+1	218428..219309	-	293	119356041	-	Cpha266_0194	-	aldolase
185	 60.62	+2	219381..221498	-	705	119356042	-	Cpha266_0195	-	short chain dehydrogenase
186	 48.76	0	221628..222833	-	401	119356043	-	Cpha266_0196	-	hypothetical protein
187	 42.01	-1	222922..223140	-	72	119356044	-	Cpha266_0197	-	hypothetical protein
188	 41.51	-1	223223..223699	-	158	119356045	-	Cpha266_0198	-	2-vinyl bacteriochlorophyllide hydratase
189	 43.95	-1	224260..224598	-	112	119356046	-	Cpha266_0199	-	hypothetical protein
190	 42.43	-1	224962..226368	+	468	119356047	-	Cpha266_0200	-	radical SAM domain-containing protein
191	 42.26	-1	226551..227177	-	208	119356048	-	Cpha266_0201	-	proto-chlorophyllide reductase 57 kD subunit
192	 45.61	0	227469..227696	+	75	119356049	-	Cpha266_0202	-	chlorosome envelope protein B
193	 50.40	0	227835..228842	+	335	119356050	-	Cpha266_0203	-	aminoglycoside phosphotransferase
194	 51.07	0	228839..229774	+	311	119356051	-	Cpha266_0204	-	nucleotidyl transferase
195	 51.46	0	229800..230963	+	387	119356052	-	Cpha266_0205	-	hypothetical protein
196	 49.68	0	230985..232397	+	470	119356053	-	Cpha266_0206	-	Na+/solute symporter
197	 42.86	-1	232510..232761	+	83	119356054	-	Cpha266_0207	-	bacteriochlorophyll C binding protein
198	 50.07	0	232932..233630	-	232	119356055	-	Cpha266_0208	-	NAD-dependent epimerase/dehydratase
199	 49.14	0	233837..235177	+	446	119356056	-	Cpha266_0209	-	pentapeptide repeat-containing protein
200	 43.41	-1	235220..235477	-	85	119356057	-	Cpha266_0210	-	hypothetical protein
201	 45.24	0	235520..235813	-	97	119356058	-	Cpha266_0211	-	hypothetical protein
202	 39.43	-2	235828..236106	+	92	119356059	-	Cpha266_0212	-	hypothetical protein
203	 47.92	0	236076..237254	-	392	119356060	-	Cpha266_0213	-	arsenite-activated ATPase ArsA
204	 46.28	0	237528..238454	-	308	119356061	-	Cpha266_0214	-	TPR repeat-containing protein
205	 48.84	0	238734..239249	+	171	119356062	-	Cpha266_0215	-	rare lipoprotein A
206	 43.08	-1	239375..239815	-	146	119356063	-	Cpha266_0216	-	hypothetical protein
207	 46.89	0	240184..240360	-	58	119356064	-	Cpha266_0217	-	rubredoxin-type Fe(Cys)4 protein
208	 47.69	0	240597..241397	-	266	119356065	-	Cpha266_0218	-	diaminopimelate epimerase
209	 47.13	0	241814..244009	+	731	119356066	-	Cpha266_0219	-	photosystem P840 reaction center, large subunit
210	 49.43	0	244107..244808	+	233	119356067	-	Cpha266_0220	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
211	 42.53	-1	244888..245670	+	260	119356068	-	Cpha266_0221	-	dolichyl-phosphate beta-D-mannosyltransferase
212	 46.97	0	245800..247875	-	691	119356069	-	Cpha266_0222	-	elongation factor G
213	 46.80	0	248120..249433	+	437	119356070	-	Cpha266_0223	-	enolase
214	 38.24	-2	249641..249946	+	101	119356071	-	Cpha266_0224	-	septum formation initiator
215	 47.05	0	249984..252017	+	677	119356072	-	Cpha266_0225	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
216	 48.46	0	252086..252865	+	259	119356073	-	Cpha266_0226	-	short-chain dehydrogenase/reductase SDR
217	 42.71	-1	253349..253540	+	63	119356074	secE	Cpha266_0227	-	preprotein translocase subunit SecE
218	 46.18	0	253562..254137	+	191	119356075	-	Cpha266_0228	-	transcription antitermination protein nusG
219	 50.00	0	254181..254606	+	141	119356076	rplK	Cpha266_0229	-	50S ribosomal protein L11
220	 47.83	0	254677..255366	+	229	119356077	rplA	Cpha266_0230	-	50S ribosomal protein L1
221	 47.78	0	255384..255902	+	172	119356078	rplJ	Cpha266_0231	-	50S ribosomal protein L10
222	 49.47	0	255969..256346	+	125	119356079	rplL	Cpha266_0232	-	50S ribosomal protein L7/L12
223	 45.77	0	256527..260465	+	1312	119356080	rpoB	Cpha266_0233	-	DNA-directed RNA polymerase subunit beta
224	 48.11	0	260535..265013	+	1492	119356081	-	Cpha266_0234	-	DNA-directed RNA polymerase subunit beta'
225	 49.96	0	265212..266558	-	448	119356082	-	Cpha266_0235	-	acetyl-CoA carboxylase, biotin carboxylase
226	 49.49	0	266578..267072	-	164	119356083	-	Cpha266_0236	-	biotin carboxyl carrier protein
227	 45.33	0	267125..267691	-	188	119356084	-	Cpha266_0237	-	translation elongation factor P (EF-P)
228	 47.83	0	267907..268182	+	91	119356085	-	Cpha266_0238	-	histone family protein DNA-binding protein
229	 49.00	0	268272..269273	+	333	119356086	-	Cpha266_0239	-	acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
230	 51.99	0	269383..270411	-	342	119356087	-	Cpha266_0240	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
231	 53.34	+1	270415..272298	-	627	119356088	-	Cpha266_0241	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
232	 46.30	0	272505..272774	-	89	119356089	-	Cpha266_0242	-	hypothetical protein
233	 52.98	0	273033..275699	+	888	119356090	alaS	Cpha266_0243	-	alanyl-tRNA synthetase
234	 52.54	0	275723..277081	+	452	119356091	-	Cpha266_0244	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
235	 56.16	+1	277187..277681	+	164	119356092	-	Cpha266_0245	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
236	 57.10	+1	277733..278035	+	100	119356093	-	Cpha266_0246	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
237	 51.52	0	278091..279047	-	318	119356094	-	Cpha266_0247	-	HipA domain-containing protein
238	 51.23	0	279052..279375	-	107	119356095	-	Cpha266_0248	-	hypothetical protein
239	 51.69	0	279379..279585	-	68	119356096	-	Cpha266_0249	-	XRE family transcriptional regulator
240	 57.88	+2	279920..281137	-	405	119356097	-	Cpha266_0250	-	phosphoserine phosphatase
241	 41.92	-1	283296..283586	-	96	119356098	-	Cpha266_0252	-	hypothetical protein
242	 44.89	0	283583..283807	-	74	119356099	-	Cpha266_0253	-	addiction module component
243	 50.20	0	283850..285070	-	406	119356100	-	Cpha266_0254	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
244	 51.67	0	285748..286614	+	288	119356101	-	Cpha266_0255	-	hypothetical protein
245	 48.48	0	287225..288241	+	338	119356102	-	Cpha266_0257	-	integron integrase
246	 43.82	-1	288424..288852	+	142	119356103	-	Cpha266_0258	-	hypothetical protein
247	 39.58	-2	289090..289329	+	79	119356104	-	Cpha266_0259	-	hypothetical protein
248	 34.88	-2	289482..289934	+	150	119356105	-	Cpha266_0260	-	hypothetical protein
249	 55.51	+1	290524..291930	-	468	119356106	-	Cpha266_0262	-	transposase, IS4 family protein
250	 36.98	-2	292108..292848	+	246	119356107	-	Cpha266_0263	-	hypothetical protein
251	 42.86	-1	292938..293210	+	90	119356108	-	Cpha266_0264	-	hypothetical protein
252	 45.74	0	293207..293464	+	85	119356109	-	Cpha266_0265	-	hypothetical protein
253	 48.85	0	293727..294203	+	158	119356110	-	Cpha266_0266	-	hypothetical protein
254	 43.93	-1	294586..295170	+	194	119356111	-	Cpha266_0267	-	hypothetical protein
255	 44.23	0	295418..296188	+	256	119356112	-	Cpha266_0268	-	hypothetical protein
256	 55.51	+1	296448..297854	-	468	119356113	-	Cpha266_0269	-	transposase, IS4 family protein
257	 44.70	0	298718..298981	+	87	119356114	-	Cpha266_0270	-	hypothetical protein
258	 38.27	-2	299402..300049	+	215	119356115	-	Cpha266_0271	-	hypothetical protein
259	 39.34	-2	300217..301065	+	282	119356116	-	Cpha266_0272	-	hypothetical protein
260	 50.89	0	301160..302731	+	523	119356117	-	Cpha266_0273	-	integrase catalytic subunit
261	 51.25	0	302737..303573	+	278	119356118	-	Cpha266_0274	-	IstB ATP binding domain-containing protein
262	 42.96	-1	304390..305262	+	290	119356119	-	Cpha266_0275	-	SEFIR domain-containing protein
263	 39.95	-1	305551..306744	+	397	119356120	-	Cpha266_0276	-	hypothetical protein
264	 32.90	-2	306836..307525	+	229	119356121	-	Cpha266_0277	-	hypothetical protein
265	 52.04	0	307601..308236	+	211	119356122	-	Cpha266_0278	-	hypothetical protein
266	 40.21	-1	309191..309961	+	256	119356123	-	Cpha266_0280	-	hypothetical protein
267	 57.59	+1	310485..311354	+	289	119356124	-	Cpha266_0281	-	abortive infection protein
268	 45.54	0	312094..312396	+	100	119356125	-	Cpha266_0282	-	ferredoxin, 2Fe-2S
269	 43.76	-1	312684..313556	-	290	119356126	-	Cpha266_0283	-	hypothetical protein
270	 45.86	0	313519..314508	-	329	119356127	-	Cpha266_0284	-	hypothetical protein
271	 44.62	0	315008..315379	+	123	119356128	-	Cpha266_0285	-	hypothetical protein
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.