IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2123	 41.67	-1	2530596..2530871	-	91	119357980	-	Cpha266_2199	-	hypothetical protein
2124	 37.78	-2	2530852..2530986	-	44	119357981	-	Cpha266_2200	-	hypothetical protein
2125	 43.41	-1	2531317..2531445	-	42	119357982	-	Cpha266_2201	-	hypothetical protein
2126	 44.80	0	2532329..2532886	+	185	119357983	-	Cpha266_2202	-	hypothetical protein
2127	 38.55	-2	2533264..2534259	+	331	119357984	-	Cpha266_2203	-	TPR repeat-containing protein
2128	 50.30	0	2534262..2535245	-	327	119357985	-	Cpha266_2204	-	hypothetical protein
2129	 50.52	0	2535326..2535808	-	160	119357986	-	Cpha266_2205	-	hypothetical protein
2130	 50.81	0	2536153..2536398	-	81	119357987	-	Cpha266_2207	-	hypothetical protein
2131	 41.77	-1	2536632..2537900	+	422	119357988	-	Cpha266_2208	-	hypothetical protein
2132	 39.38	-2	2537900..2538577	+	225	119357989	-	Cpha266_2209	-	hypothetical protein
2133	 51.25	0	2538876..2539712	-	278	119357990	-	Cpha266_2210	-	IstB ATP binding domain-containing protein
2134	 50.89	0	2539718..2541289	-	523	119357991	-	Cpha266_2211	-	integrase catalytic subunit
2135	 51.24	0	2541845..2542810	-	321	119357992	-	Cpha266_2213	-	hypothetical protein
2136	 54.16	+1	2542907..2544001	-	364	119357993	-	Cpha266_2214	-	RNA-directed DNA polymerase (Reverse transcriptase)
2137	 50.25	0	2544294..2544494	-	66	119357994	-	Cpha266_2215	-	hypothetical protein
2138	 50.23	0	2544574..2544792	-	72	119357995	-	Cpha266_2216	-	hypothetical protein
2139	 52.34	0	2545107..2546090	-	327	119357996	-	Cpha266_2218	-	hypothetical protein
2140	 33.08	-2	2546158..2546934	-	258	119357997	-	Cpha266_2219	-	hypothetical protein
2141	 50.09	0	2547092..2547658	+	188	119357998	-	Cpha266_2220	-	hypothetical protein
2142	 52.63	0	2547742..2548674	+	310	119357999	-	Cpha266_2221	-	integrase catalytic subunit
2143	 47.16	0	2548699..2548980	+	93	119358000	-	Cpha266_2222	-	hypothetical protein
2144	 48.36	0	2549195..2549407	-	70	119358001	-	Cpha266_2223	-	hypothetical protein
2145	 50.15	0	2549456..2549794	-	112	119358002	-	Cpha266_2224	-	hypothetical protein
2146	 53.78	+1	2549929..2550417	+	162	119358003	-	Cpha266_2225	-	putative transposase
2147	 49.30	0	2550665..2551948	-	427	119358004	-	Cpha266_2226	-	transposase IS116/IS110/IS902 family protein
2148	 31.93	-2	2552272..2554404	-	710	119358005	-	Cpha266_2227	-	DEAD/DEAH box helicase domain-containing protein
2149	 33.33	-2	2554404..2555717	-	437	119358006	-	Cpha266_2228	-	hypothetical protein
2150	 30.60	-2	2555714..2557687	-	657	119358007	-	Cpha266_2229	-	hypothetical protein
2151	 58.23	+2	2558387..2558848	-	153	119358008	-	Cpha266_2231	-	hypothetical protein
2152	 48.09	0	2559136..2559921	+	261	119358009	-	Cpha266_2232	-	hypothetical protein
2153	 51.24	0	2559972..2560937	-	321	119358010	-	Cpha266_2233	-	hypothetical protein
2154	 39.31	-2	2561845..2562363	+	172	119358011	-	Cpha266_2235	-	hypothetical protein
2155	 49.13	0	2562687..2563667	-	326	119358012	-	Cpha266_2236	-	uracil-DNA glycosylase superfamily protein
2156	 51.45	0	2564077..2565042	-	321	119358013	-	Cpha266_2237	-	hypothetical protein
2157	 49.77	0	2565122..2565334	-	70	119358014	-	Cpha266_2238	-	hypothetical protein
2158	 47.44	0	2565367..2565600	-	77	119358015	-	Cpha266_2239	-	hypothetical protein
2159	 49.67	0	2565754..2566500	-	248	119358016	-	Cpha266_2240	-	IstB ATP binding domain-containing protein
2160	 50.03	0	2566515..2568089	-	524	119358017	-	Cpha266_2241	-	integrase catalytic subunit
2161	 45.05	0	2569229..2569612	-	127	119358018	-	Cpha266_2243	-	hypothetical protein
2162	 28.66	-2	2569706..2572315	-	869	119358019	-	Cpha266_2244	-	hypothetical protein
2163	 61.34	+2	2572753..2573109	-	118	119358020	-	Cpha266_2245	-	hypothetical protein
2164	 51.24	0	2574162..2575127	-	321	119358021	-	Cpha266_2246	-	hypothetical protein
2165	 50.00	0	2575355..2575660	-	101	119358022	-	Cpha266_2247	-	hypothetical protein
2166	 29.78	-2	2576366..2577433	-	355	119358023	-	Cpha266_2249	-	hypothetical protein
2167	 29.51	-2	2577515..2578483	-	322	119358024	-	Cpha266_2250	-	hypothetical protein
2168	 49.38	0	2579554..2579715	-	53	119358025	-	Cpha266_2253	-	hypothetical protein
2169	 27.99	-2	2579982..2581664	-	560	119358026	-	Cpha266_2254	-	hypothetical protein
2170	 60.23	+2	2581959..2582222	-	87	119358027	-	Cpha266_2255	-	hypothetical protein
2171	 32.95	-2	2582589..2583620	-	343	119358028	-	Cpha266_2256	-	hypothetical protein
2172	 33.12	-2	2583626..2584561	-	311	119358029	-	Cpha266_2257	-	hypothetical protein
2173	 28.74	-2	2584566..2585435	-	289	119358030	-	Cpha266_2258	-	hypothetical protein
2174	 61.22	+2	2585800..2586588	-	262	119358031	-	Cpha266_2259	-	hypothetical protein
2175	 61.34	+2	2586597..2588135	-	512	119358032	-	Cpha266_2260	-	ATPase central domain-containing protein
2176	 61.17	+2	2588324..2589943	-	539	119358033	-	Cpha266_2261	-	DnaK like protein
2177	 61.14	+2	2589966..2591321	-	451	119358034	-	Cpha266_2262	-	hypothetical protein
2178	 50.71	0	2592471..2594162	-	563	119358035	-	Cpha266_2263	-	sulfatase
2179	 58.72	+2	2594437..2595744	-	435	119358036	-	Cpha266_2264	-	HipA domain-containing protein
2180	 61.78	+2	2595741..2596088	-	115	119358037	-	Cpha266_2265	-	helix-turn-helix domain-containing protein
2181	 57.37	+1	2596532..2597338	-	268	119358038	-	Cpha266_2266	-	short-chain dehydrogenase/reductase SDR
2182	 49.65	0	2597917..2598345	-	142	119358039	-	Cpha266_2267	-	peptidylprolyl isomerase, FKBP-type
2183	 51.15	0	2598500..2599588	-	362	119358040	-	Cpha266_2268	-	MscS mechanosensitive ion channel
2184	 45.92	0	2599665..2600864	-	399	119358041	-	Cpha266_2269	-	FAD dependent oxidoreductase
2185	 50.20	0	2602041..2603261	+	406	119358042	-	Cpha266_2270	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
2186	 52.30	0	2604148..2604669	-	173	119358043	-	Cpha266_2271	-	acetyltransferase
2187	 48.71	0	2604771..2605505	+	244	119358044	-	Cpha266_2272	-	ABC transporter related
2188	 48.70	0	2605721..2607217	+	498	119358045	-	Cpha266_2273	-	radical SAM domain-containing protein
2189	 51.91	0	2607447..2608856	+	469	119358046	-	Cpha266_2274	-	metal dependent phosphohydrolase
2190	 48.93	0	2608903..2609229	+	108	119358047	-	Cpha266_2275	-	hypothetical protein
2191	 55.09	+1	2609233..2610027	+	264	119358048	-	Cpha266_2276	-	alpha/beta hydrolase fold
2192	 51.42	0	2610038..2611342	-	434	119358049	-	Cpha266_2277	-	3-phosphoshikimate 1-carboxyvinyltransferase
2193	 43.43	-1	2611425..2611622	-	65	119358050	rpsU	Cpha266_2278	-	30S ribosomal protein S21
2194	 47.77	0	2611648..2612208	-	186	119358051	-	Cpha266_2279	-	hypothetical protein
2195	 48.70	0	2612345..2613724	-	459	119358052	-	Cpha266_2280	-	cysteine synthase
2196	 46.25	0	2613986..2614519	+	177	119358053	-	Cpha266_2281	-	hypothetical protein
2197	 47.57	0	2614677..2615252	+	191	119358054	-	Cpha266_2282	-	hypothetical protein
2198	 40.78	-1	2615282..2615590	+	102	119358055	-	Cpha266_2283	-	hypothetical protein
2199	 49.07	0	2615598..2616728	+	376	119358056	-	Cpha266_2284	-	alanine racemase
2200	 46.97	0	2616743..2617270	+	175	119358057	-	Cpha266_2285	-	helix-hairpin-helix DNA-binding motif-containing protein
2201	 49.05	0	2617270..2618166	+	298	119358058	-	Cpha266_2286	-	hypothetical protein
2202	 51.81	0	2618147..2619169	-	340	119358059	-	Cpha266_2287	-	aspartate semialdehyde dehydrogenase
2203	 49.62	0	2619183..2620226	-	347	119358060	-	Cpha266_2288	-	nifR3 family TIM-barrel protein
2204	 48.91	0	2620223..2621275	-	350	119358061	recA	Cpha266_2289	-	recombinase A
2205	 52.42	0	2621313..2622302	-	329	119358062	-	Cpha266_2290	-	NAD-dependent epimerase/dehydratase
2206	 47.62	0	2622474..2623796	+	440	119358063	-	Cpha266_2291	-	peptidase M16 domain-containing protein
2207	 47.20	0	2623882..2625165	+	427	119358064	-	Cpha266_2292	-	trigger factor
2208	 47.95	0	2625277..2626152	-	291	119358065	-	Cpha266_2293	-	nicotinate-nucleotide pyrophosphorylase [carboxylating]
2209	 43.12	-1	2626394..2626771	+	125	119358066	-	Cpha266_2294	-	dihydroneopterin aldolase
2210	 51.79	0	2626775..2627332	+	185	119358067	-	Cpha266_2295	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
2211	 55.75	+1	2629249..2629596	+	115	119358068	-	Cpha266_2296	-	hypothetical protein
2212	 45.89	0	2629745..2630899	-	384	119358069	-	Cpha266_2297	-	arsenite-activated ATPase ArsA
2213	 45.77	0	2630914..2632755	-	613	119358070	-	Cpha266_2298	-	hypothetical protein
2214	 46.75	0	2633029..2633274	-	81	119358071	-	Cpha266_2299	-	bacteriochlorophyll C binding protein
2215	 48.33	0	2633406..2633825	-	139	119358072	-	Cpha266_2300	-	chlorosome envelope protein C
2216	 46.06	0	2633956..2635173	-	405	119358073	-	Cpha266_2301	-	arsenite-activated ATPase ArsA
2217	 51.84	0	2635369..2636238	+	289	119358074	-	Cpha266_2302	-	dihydroorotate oxidase B, electron transfer subunit
2218	 53.10	0	2636332..2636847	+	171	119358075	-	Cpha266_2303	-	single-strand binding protein
2219	 48.51	0	2636831..2637904	+	357	119358076	-	Cpha266_2304	-	DNA polymerase III, delta subunit
2220	 54.52	+1	2638509..2639504	-	331	119358077	-	Cpha266_2305	-	NAD-dependent epimerase/dehydratase
2221	 49.79	0	2639735..2640949	+	404	119358078	-	Cpha266_2306	-	8-amino-7-oxononanoate synthase
2222	 51.25	0	2641644..2642480	-	278	119358079	-	Cpha266_2308	-	IstB ATP binding domain-containing protein
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.