IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2089	 49.47	0	2503547..2504389	+	280	119357946	-	Cpha266_2161	-	UspA domain-containing protein
2090	 48.05	0	2504426..2504860	-	144	119357947	-	Cpha266_2162	-	hypothetical protein
2091	 51.55	0	2504876..2505682	-	268	119357948	-	Cpha266_2163	-	tRNA/rRNA methyltransferase (SpoU)
2092	 48.83	0	2505679..2506536	-	285	119357949	-	Cpha266_2164	-	hypothetical protein
2093	 50.12	0	2506762..2508024	+	420	119357950	-	Cpha266_2165	-	peptidase U32
2094	 50.74	0	2508114..2509193	+	359	119357951	-	Cpha266_2166	-	hydrogenase/sulfur reductase, beta subunit
2095	 54.06	+1	2509247..2510071	+	274	119357952	-	Cpha266_2167	-	oxidoreductase FAD/NAD(P)-binding subunit
2096	 54.77	+1	2510082..2510846	+	254	119357953	-	Cpha266_2168	-	NADH ubiquinone oxidoreductase, 20 kDa subunit
2097	 58.90	+2	2510836..2512110	+	424	119357954	-	Cpha266_2169	-	nickel-dependent hydrogenase, large subunit
2098	 51.67	0	2512178..2512357	+	59	119357955	-	Cpha266_2170	-	hypothetical protein
2099	 57.91	+2	2512371..2512907	+	178	119357956	-	Cpha266_2171	-	hypothetical protein
2100	 57.91	+2	2513410..2513706	-	98	119357957	-	Cpha266_2172	-	hypothetical protein
2101	 51.25	0	2513933..2514769	-	278	119357958	-	Cpha266_2173	-	IstB ATP binding domain-containing protein
2102	 50.76	0	2514775..2516346	-	523	119357959	-	Cpha266_2174	-	integrase catalytic subunit
2103	 48.20	0	2516918..2517139	+	73	119357960	-	Cpha266_2175	-	transcriptional regulator/antitoxin, MazE
2104	 44.70	0	2517136..2517531	+	131	119357961	-	Cpha266_2176	-	death-on-curing family protein
2105	 46.95	0	2518884..2520080	+	398	119357962	-	Cpha266_2178	-	SMC domain-containing protein
2106	 46.53	0	2520074..2520679	+	201	119357963	-	Cpha266_2179	-	hypothetical protein
2107	 48.91	0	2520706..2520981	-	91	119357964	-	Cpha266_2180	-	hypothetical protein
2108	 50.16	0	2521324..2521638	+	104	119357965	-	Cpha266_2182	-	hypothetical protein
2109	 48.18	0	2521876..2522838	+	320	119357966	-	Cpha266_2183	-	hypothetical protein
2110	 48.52	0	2523251..2523520	+	89	119357967	-	Cpha266_2184	-	hypothetical protein
2111	 50.67	0	2523700..2523924	+	74	119357968	-	Cpha266_2185	-	hypothetical protein
2112	 43.33	-1	2524216..2524545	-	109	119357969	-	Cpha266_2186	-	plasmid stabilization system protein
2113	 48.03	0	2524542..2524820	-	92	119357970	-	Cpha266_2187	-	prevent-host-death family protein
2114	 50.51	0	2524837..2525034	-	65	119357971	-	Cpha266_2188	-	hypothetical protein
2115	 49.62	0	2525166..2526227	-	353	119357972	-	Cpha266_2189	-	hypothetical protein
2116	 42.19	-1	2526224..2526415	-	63	119357973	-	Cpha266_2190	-	hypothetical protein
2117	 45.28	0	2526586..2526903	-	105	119357974	-	Cpha266_2191	-	HicB family protein
2118	 44.44	0	2526906..2527157	-	83	119357975	-	Cpha266_2192	-	HicA protein
2119	 48.80	0	2527352..2527978	+	208	119357976	-	Cpha266_2194	-	transposase IS116/IS110/IS902 family protein
2120	 50.22	0	2528392..2528616	+	74	119357977	-	Cpha266_2195	-	hypothetical protein
2121	 46.96	0	2528613..2528957	+	114	119357978	-	Cpha266_2196	-	hypothetical protein
2122	 54.54	+1	2529421..2530368	-	315	119357979	-	Cpha266_2198	-	HpcH/HpaI aldolase
2123	 41.67	-1	2530596..2530871	-	91	119357980	-	Cpha266_2199	-	hypothetical protein
2124	 37.78	-2	2530852..2530986	-	44	119357981	-	Cpha266_2200	-	hypothetical protein
2125	 43.41	-1	2531317..2531445	-	42	119357982	-	Cpha266_2201	-	hypothetical protein
2126	 44.80	0	2532329..2532886	+	185	119357983	-	Cpha266_2202	-	hypothetical protein
2127	 38.55	-2	2533264..2534259	+	331	119357984	-	Cpha266_2203	-	TPR repeat-containing protein
2128	 50.30	0	2534262..2535245	-	327	119357985	-	Cpha266_2204	-	hypothetical protein
2129	 50.52	0	2535326..2535808	-	160	119357986	-	Cpha266_2205	-	hypothetical protein
2130	 50.81	0	2536153..2536398	-	81	119357987	-	Cpha266_2207	-	hypothetical protein
2131	 41.77	-1	2536632..2537900	+	422	119357988	-	Cpha266_2208	-	hypothetical protein
2132	 39.38	-2	2537900..2538577	+	225	119357989	-	Cpha266_2209	-	hypothetical protein
2133	 51.25	0	2538876..2539712	-	278	119357990	-	Cpha266_2210	-	IstB ATP binding domain-containing protein
2134	 50.89	0	2539718..2541289	-	523	119357991	-	Cpha266_2211	-	integrase catalytic subunit
2135	 51.24	0	2541845..2542810	-	321	119357992	-	Cpha266_2213	-	hypothetical protein
2136	 54.16	+1	2542907..2544001	-	364	119357993	-	Cpha266_2214	-	RNA-directed DNA polymerase (Reverse transcriptase)
2137	 50.25	0	2544294..2544494	-	66	119357994	-	Cpha266_2215	-	hypothetical protein
2138	 50.23	0	2544574..2544792	-	72	119357995	-	Cpha266_2216	-	hypothetical protein
2139	 52.34	0	2545107..2546090	-	327	119357996	-	Cpha266_2218	-	hypothetical protein
2140	 33.08	-2	2546158..2546934	-	258	119357997	-	Cpha266_2219	-	hypothetical protein
2141	 50.09	0	2547092..2547658	+	188	119357998	-	Cpha266_2220	-	hypothetical protein
2142	 52.63	0	2547742..2548674	+	310	119357999	-	Cpha266_2221	-	integrase catalytic subunit
2143	 47.16	0	2548699..2548980	+	93	119358000	-	Cpha266_2222	-	hypothetical protein
2144	 48.36	0	2549195..2549407	-	70	119358001	-	Cpha266_2223	-	hypothetical protein
2145	 50.15	0	2549456..2549794	-	112	119358002	-	Cpha266_2224	-	hypothetical protein
2146	 53.78	+1	2549929..2550417	+	162	119358003	-	Cpha266_2225	-	putative transposase
2147	 49.30	0	2550665..2551948	-	427	119358004	-	Cpha266_2226	-	transposase IS116/IS110/IS902 family protein
2148	 31.93	-2	2552272..2554404	-	710	119358005	-	Cpha266_2227	-	DEAD/DEAH box helicase domain-containing protein
2149	 33.33	-2	2554404..2555717	-	437	119358006	-	Cpha266_2228	-	hypothetical protein
2150	 30.60	-2	2555714..2557687	-	657	119358007	-	Cpha266_2229	-	hypothetical protein
2151	 58.23	+2	2558387..2558848	-	153	119358008	-	Cpha266_2231	-	hypothetical protein
2152	 48.09	0	2559136..2559921	+	261	119358009	-	Cpha266_2232	-	hypothetical protein
2153	 51.24	0	2559972..2560937	-	321	119358010	-	Cpha266_2233	-	hypothetical protein
2154	 39.31	-2	2561845..2562363	+	172	119358011	-	Cpha266_2235	-	hypothetical protein
2155	 49.13	0	2562687..2563667	-	326	119358012	-	Cpha266_2236	-	uracil-DNA glycosylase superfamily protein
2156	 51.45	0	2564077..2565042	-	321	119358013	-	Cpha266_2237	-	hypothetical protein
2157	 49.77	0	2565122..2565334	-	70	119358014	-	Cpha266_2238	-	hypothetical protein
2158	 47.44	0	2565367..2565600	-	77	119358015	-	Cpha266_2239	-	hypothetical protein
2159	 49.67	0	2565754..2566500	-	248	119358016	-	Cpha266_2240	-	IstB ATP binding domain-containing protein
2160	 50.03	0	2566515..2568089	-	524	119358017	-	Cpha266_2241	-	integrase catalytic subunit
2161	 45.05	0	2569229..2569612	-	127	119358018	-	Cpha266_2243	-	hypothetical protein
2162	 28.66	-2	2569706..2572315	-	869	119358019	-	Cpha266_2244	-	hypothetical protein
2163	 61.34	+2	2572753..2573109	-	118	119358020	-	Cpha266_2245	-	hypothetical protein
2164	 51.24	0	2574162..2575127	-	321	119358021	-	Cpha266_2246	-	hypothetical protein
2165	 50.00	0	2575355..2575660	-	101	119358022	-	Cpha266_2247	-	hypothetical protein
2166	 29.78	-2	2576366..2577433	-	355	119358023	-	Cpha266_2249	-	hypothetical protein
2167	 29.51	-2	2577515..2578483	-	322	119358024	-	Cpha266_2250	-	hypothetical protein
2168	 49.38	0	2579554..2579715	-	53	119358025	-	Cpha266_2253	-	hypothetical protein
2169	 27.99	-2	2579982..2581664	-	560	119358026	-	Cpha266_2254	-	hypothetical protein
2170	 60.23	+2	2581959..2582222	-	87	119358027	-	Cpha266_2255	-	hypothetical protein
2171	 32.95	-2	2582589..2583620	-	343	119358028	-	Cpha266_2256	-	hypothetical protein
2172	 33.12	-2	2583626..2584561	-	311	119358029	-	Cpha266_2257	-	hypothetical protein
2173	 28.74	-2	2584566..2585435	-	289	119358030	-	Cpha266_2258	-	hypothetical protein
2174	 61.22	+2	2585800..2586588	-	262	119358031	-	Cpha266_2259	-	hypothetical protein
2175	 61.34	+2	2586597..2588135	-	512	119358032	-	Cpha266_2260	-	ATPase central domain-containing protein
2176	 61.17	+2	2588324..2589943	-	539	119358033	-	Cpha266_2261	-	DnaK like protein
2177	 61.14	+2	2589966..2591321	-	451	119358034	-	Cpha266_2262	-	hypothetical protein
2178	 50.71	0	2592471..2594162	-	563	119358035	-	Cpha266_2263	-	sulfatase
2179	 58.72	+2	2594437..2595744	-	435	119358036	-	Cpha266_2264	-	HipA domain-containing protein
2180	 61.78	+2	2595741..2596088	-	115	119358037	-	Cpha266_2265	-	helix-turn-helix domain-containing protein
2181	 57.37	+1	2596532..2597338	-	268	119358038	-	Cpha266_2266	-	short-chain dehydrogenase/reductase SDR
2182	 49.65	0	2597917..2598345	-	142	119358039	-	Cpha266_2267	-	peptidylprolyl isomerase, FKBP-type
2183	 51.15	0	2598500..2599588	-	362	119358040	-	Cpha266_2268	-	MscS mechanosensitive ion channel
2184	 45.92	0	2599665..2600864	-	399	119358041	-	Cpha266_2269	-	FAD dependent oxidoreductase
2185	 50.20	0	2602041..2603261	+	406	119358042	-	Cpha266_2270	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
2186	 52.30	0	2604148..2604669	-	173	119358043	-	Cpha266_2271	-	acetyltransferase
2187	 48.71	0	2604771..2605505	+	244	119358044	-	Cpha266_2272	-	ABC transporter related
2188	 48.70	0	2605721..2607217	+	498	119358045	-	Cpha266_2273	-	radical SAM domain-containing protein
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.